MTR (5-methyltetrahydrofolate-homocysteine methyltransferase) - Rat Genome Database

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Gene: MTR (5-methyltetrahydrofolate-homocysteine methyltransferase) Canis lupus familiaris
Analyze
Symbol: MTR
Name: 5-methyltetrahydrofolate-homocysteine methyltransferase
RGD ID: 12232190
Description: ENCODES a protein that exhibits amino acid binding (ortholog); folic acid binding (ortholog); methionine synthase activity (ortholog); INVOLVED IN axon regeneration (ortholog); cellular response to methionine (ortholog); cellular response to nitric oxide (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; altered folate mediated one-carbon metabolic pathway; choline metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute lymphoblastic leukemia (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methionine synthase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.143,219,851 - 3,328,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl43,215,090 - 3,328,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha43,267,770 - 3,375,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.043,240,178 - 3,347,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl43,243,029 - 3,347,943 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.143,239,421 - 3,346,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.043,370,826 - 3,478,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.043,591,890 - 3,699,525 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
MTR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.143,219,851 - 3,328,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl43,215,090 - 3,328,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha43,267,770 - 3,375,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.043,240,178 - 3,347,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl43,243,029 - 3,347,943 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.143,239,421 - 3,346,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.043,370,826 - 3,478,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.043,591,890 - 3,699,525 (-)NCBIUU_Cfam_GSD_1.0
MTR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381236,795,281 - 236,903,981 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1236,795,260 - 236,921,278 (+)EnsemblGRCh38hg38GRCh38
GRCh371236,958,581 - 237,067,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361235,025,341 - 235,130,585 (+)NCBINCBI36Build 36hg18NCBI36
Build 341233,284,758 - 233,390,001NCBI
Celera1210,207,757 - 210,316,611 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1207,414,687 - 207,523,271 (+)NCBIHuRef
CHM1_11238,230,032 - 238,338,720 (+)NCBICHM1_1
T2T-CHM13v2.01236,206,330 - 236,315,021 (+)NCBIT2T-CHM13v2.0
Mtr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391312,196,217 - 12,273,090 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1312,197,598 - 12,272,999 (-)EnsemblGRCm39 Ensembl
GRCm381312,181,331 - 12,258,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1312,182,712 - 12,258,113 (-)EnsemblGRCm38mm10GRCm38
MGSCv371312,279,086 - 12,350,267 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361312,240,869 - 12,312,428 (-)NCBIMGSCv36mm8
Celera1312,106,428 - 12,177,671 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map134.52NCBI
Mtr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81762,911,705 - 62,996,544 (+)NCBIGRCr8
mRatBN7.21758,219,998 - 58,308,560 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1758,220,071 - 58,304,822 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1761,408,217 - 61,492,723 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01765,411,342 - 65,495,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01759,565,531 - 59,650,043 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01766,210,444 - 66,295,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1766,210,461 - 66,295,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01767,954,893 - 68,041,488 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41768,782,708 - 68,867,101 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11768,793,540 - 68,877,930 (+)NCBI
Celera1762,230,512 - 62,313,601 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Mtr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554923,376,512 - 3,474,180 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554923,372,915 - 3,474,173 (-)NCBIChiLan1.0ChiLan1.0
MTR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,253,398 - 12,365,190 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1112,469,507 - 12,584,105 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,353,195 - 212,463,304 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11217,352,707 - 217,461,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1217,358,050 - 217,460,946 (+)Ensemblpanpan1.1panPan2
Mtr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934439,925,911 - 40,014,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648416,087,923 - 16,180,148 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648416,087,924 - 16,180,089 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1454,546,978 - 54,652,763 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11454,546,978 - 54,652,780 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21458,497,706 - 58,627,105 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12573,935,666 - 74,039,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2573,935,225 - 74,038,741 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605576,034,340 - 76,141,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477513,792,043 - 13,896,559 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477513,791,690 - 13,903,888 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MTR
820 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 3 4 3 2
Low 5 5 17 6 3 6 6 6 8 5 8 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005618782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005618785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000016858   ⟹   ENSCAFP00000015601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,223,795 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000062027   ⟹   ENSCAFP00000056859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,222,659 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071380   ⟹   ENSCAFP00000051122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,221,874 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089181   ⟹   ENSCAFP00000058943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,224,106 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089462   ⟹   ENSCAFP00000044340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,215,090 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090676   ⟹   ENSCAFP00000060298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,224,106 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000093687   ⟹   ENSCAFP00000050717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl43,224,106 - 3,328,115 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845004416   ⟹   ENSCAFP00845003530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl43,243,029 - 3,347,943 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845004470   ⟹   ENSCAFP00845003574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl43,243,029 - 3,347,943 (-)Ensembl
RefSeq Acc Id: XM_005618782   ⟹   XP_005618839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,219,851 - 3,328,000 (-)NCBI
Dog10K_Boxer_Tasha43,267,770 - 3,375,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005618785   ⟹   XP_005618842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,219,851 - 3,328,000 (-)NCBI
Dog10K_Boxer_Tasha43,267,770 - 3,375,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112724   ⟹   XP_013968199
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,219,851 - 3,328,000 (-)NCBI
Dog10K_Boxer_Tasha43,267,770 - 3,375,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112725   ⟹   XP_013968200
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,219,851 - 3,327,456 (-)NCBI
Dog10K_Boxer_Tasha43,267,770 - 3,374,653 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417379   ⟹   XP_022273087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,226,413 - 3,328,000 (-)NCBI
Dog10K_Boxer_Tasha43,274,301 - 3,375,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417380   ⟹   XP_022273088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,226,413 - 3,328,000 (-)NCBI
Dog10K_Boxer_Tasha43,274,301 - 3,375,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417381   ⟹   XP_022273089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.143,219,851 - 3,295,108 (-)NCBI
Dog10K_Boxer_Tasha43,267,770 - 3,342,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038472803   ⟹   XP_038328731
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,239,421 - 3,346,967 (-)NCBI
RefSeq Acc Id: XM_038472804   ⟹   XP_038328732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,239,421 - 3,346,967 (-)NCBI
RefSeq Acc Id: XM_038472805   ⟹   XP_038328733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,239,421 - 3,346,255 (-)NCBI
RefSeq Acc Id: XM_038472806   ⟹   XP_038328734
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,245,955 - 3,346,967 (-)NCBI
RefSeq Acc Id: XM_038472807   ⟹   XP_038328735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,245,955 - 3,346,967 (-)NCBI
RefSeq Acc Id: XM_038472808   ⟹   XP_038328736
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,239,421 - 3,346,660 (-)NCBI
RefSeq Acc Id: XM_038472809   ⟹   XP_038328737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.143,239,421 - 3,314,031 (-)NCBI
RefSeq Acc Id: XM_038533819   ⟹   XP_038389747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,591,890 - 3,699,525 (-)NCBI
RefSeq Acc Id: XM_038533820   ⟹   XP_038389748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,591,890 - 3,699,525 (-)NCBI
RefSeq Acc Id: XM_038533821   ⟹   XP_038389749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,591,890 - 3,698,813 (-)NCBI
RefSeq Acc Id: XM_038533822   ⟹   XP_038389750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,598,425 - 3,699,525 (-)NCBI
RefSeq Acc Id: XM_038533823   ⟹   XP_038389751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,598,425 - 3,699,525 (-)NCBI
RefSeq Acc Id: XM_038533824   ⟹   XP_038389752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,591,890 - 3,699,218 (-)NCBI
RefSeq Acc Id: XM_038533825   ⟹   XP_038389753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.043,591,890 - 3,666,544 (-)NCBI
RefSeq Acc Id: XM_038598140   ⟹   XP_038454068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,370,826 - 3,478,490 (-)NCBI
RefSeq Acc Id: XM_038598141   ⟹   XP_038454069
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,370,826 - 3,478,490 (-)NCBI
RefSeq Acc Id: XM_038598142   ⟹   XP_038454070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,370,826 - 3,477,778 (-)NCBI
RefSeq Acc Id: XM_038598143   ⟹   XP_038454071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,377,359 - 3,478,490 (-)NCBI
RefSeq Acc Id: XM_038598144   ⟹   XP_038454072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,377,359 - 3,478,490 (-)NCBI
RefSeq Acc Id: XM_038598145   ⟹   XP_038454073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,370,826 - 3,478,183 (-)NCBI
RefSeq Acc Id: XM_038598146   ⟹   XP_038454074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.043,370,826 - 3,445,511 (-)NCBI
RefSeq Acc Id: XM_038662441   ⟹   XP_038518369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,240,178 - 3,347,933 (-)NCBI
RefSeq Acc Id: XM_038662442   ⟹   XP_038518370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,240,178 - 3,347,933 (-)NCBI
RefSeq Acc Id: XM_038662443   ⟹   XP_038518371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,240,178 - 3,347,221 (-)NCBI
RefSeq Acc Id: XM_038662444   ⟹   XP_038518372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,246,721 - 3,347,933 (-)NCBI
RefSeq Acc Id: XM_038662445   ⟹   XP_038518373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,246,721 - 3,347,933 (-)NCBI
RefSeq Acc Id: XM_038662446   ⟹   XP_038518374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,240,178 - 3,347,626 (-)NCBI
RefSeq Acc Id: XM_038662447   ⟹   XP_038518375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.043,240,178 - 3,314,955 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005618839 (Get FASTA)   NCBI Sequence Viewer  
  XP_005618842 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968199 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968200 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273087 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273088 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273089 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328731 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328732 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328733 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328734 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328735 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328737 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389748 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389749 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389750 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389751 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389752 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389753 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454070 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454072 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454073 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518372 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518375 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015601.5
  ENSCAFP00000050717.1
  ENSCAFP00030015600.1
  ENSCAFP00030016192.1
  ENSCAFP00040001492.1
  ENSCAFP00040001546.1
  ENSCAFP00040001615.1
  ENSCAFP00040001673.1
  ENSCAFP00040001724.1
  ENSCAFP00040001778.1
  ENSCAFP00845003530
  ENSCAFP00845003530.1
  ENSCAFP00845003574.1
RefSeq Acc Id: XP_005618842   ⟸   XM_005618785
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LLV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618839   ⟸   XM_005618782
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MG95 (UniProtKB/TrEMBL),   A0A8P0NCJ6 (UniProtKB/TrEMBL),   A0A8C0LLV6 (UniProtKB/TrEMBL),   A0A8C0PSF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968199   ⟸   XM_014112724
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSR8 (UniProtKB/TrEMBL),   A0A8C0Q477 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968200   ⟸   XM_014112725
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273089   ⟸   XM_022417381
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_022273088   ⟸   XM_022417380
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273087   ⟸   XM_022417379
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050717   ⟸   ENSCAFT00000093687
RefSeq Acc Id: ENSCAFP00000056859   ⟸   ENSCAFT00000062027
RefSeq Acc Id: ENSCAFP00000058943   ⟸   ENSCAFT00000089181
RefSeq Acc Id: ENSCAFP00000060298   ⟸   ENSCAFT00000090676
RefSeq Acc Id: ENSCAFP00000044340   ⟸   ENSCAFT00000089462
RefSeq Acc Id: ENSCAFP00000015601   ⟸   ENSCAFT00000016858
RefSeq Acc Id: ENSCAFP00000051122   ⟸   ENSCAFT00000071380
RefSeq Acc Id: XP_038328732   ⟸   XM_038472804
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038328731   ⟸   XM_038472803
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328736   ⟸   XM_038472808
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038328733   ⟸   XM_038472805
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038328737   ⟸   XM_038472809
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038328735   ⟸   XM_038472807
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038328734   ⟸   XM_038472806
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038454069   ⟸   XM_038598141
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038454068   ⟸   XM_038598140
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454073   ⟸   XM_038598145
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038454070   ⟸   XM_038598142
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038454074   ⟸   XM_038598146
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038454072   ⟸   XM_038598144
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038454071   ⟸   XM_038598143
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038518370   ⟸   XM_038662442
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MG95 (UniProtKB/TrEMBL),   A0A8P0NCJ6 (UniProtKB/TrEMBL),   A0A8C0LLV6 (UniProtKB/TrEMBL),   A0A8C0PSF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518369   ⟸   XM_038662441
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSR8 (UniProtKB/TrEMBL),   A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518374   ⟸   XM_038662446
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LLV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518371   ⟸   XM_038662443
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518375   ⟸   XM_038662447
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038518373   ⟸   XM_038662445
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518372   ⟸   XM_038662444
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389748   ⟸   XM_038533820
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LLV6 (UniProtKB/TrEMBL),   A0A8C0PSF8 (UniProtKB/TrEMBL),   A0A8I3MG95 (UniProtKB/TrEMBL),   A0A8P0NCJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389747   ⟸   XM_038533819
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSR8 (UniProtKB/TrEMBL),   A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389752   ⟸   XM_038533824
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LLV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389749   ⟸   XM_038533821
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389753   ⟸   XM_038533825
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038389751   ⟸   XM_038533823
- Peptide Label: isoform X5
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389750   ⟸   XM_038533822
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q477 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845003530   ⟸   ENSCAFT00845004416
RefSeq Acc Id: ENSCAFP00845003574   ⟸   ENSCAFT00845004470

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010464 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009641 UniProtKB/TrEMBL
  ENSCAFG00040000961 UniProtKB/TrEMBL
  ENSCAFG00845002493 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016858.5 UniProtKB/TrEMBL
  ENSCAFT00000093687.2 UniProtKB/TrEMBL
  ENSCAFT00030017862.1 UniProtKB/TrEMBL
  ENSCAFT00030018556.1 UniProtKB/TrEMBL
  ENSCAFT00040001765.1 UniProtKB/TrEMBL
  ENSCAFT00040001822.1 UniProtKB/TrEMBL
  ENSCAFT00040001898.1 UniProtKB/TrEMBL
  ENSCAFT00040001958.1 UniProtKB/TrEMBL
  ENSCAFT00040002013.1 UniProtKB/TrEMBL
  ENSCAFT00040002083.1 UniProtKB/TrEMBL
  ENSCAFT00845004416 ENTREZGENE
  ENSCAFT00845004416.1 UniProtKB/TrEMBL
  ENSCAFT00845004470.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1240.10 UniProtKB/TrEMBL
  3.10.196.10 UniProtKB/TrEMBL
  3.20.20.20 UniProtKB/TrEMBL
  3.20.20.330 UniProtKB/TrEMBL
  Cobalamin-binding domain UniProtKB/TrEMBL
  Cobalamin-dependent Methionine Synthase, domain 2 UniProtKB/TrEMBL
InterPro Cbl-bd_cap UniProtKB/TrEMBL
  Cobalamin-bd UniProtKB/TrEMBL
  Cobalamin-bd_sf UniProtKB/TrEMBL
  Dihydropteroate_synth-like UniProtKB/TrEMBL
  HCY_dom UniProtKB/TrEMBL
  HCY_dom_sf UniProtKB/TrEMBL
  Met_synthase_B12-bd UniProtKB/TrEMBL
  MetH UniProtKB/TrEMBL
  Meth_synthase_dom UniProtKB/TrEMBL
  Pterin-binding_dom UniProtKB/TrEMBL
  VitB12-dep_Met_synth_activ_dom UniProtKB/TrEMBL
  VitB12-dep_Met_synth_activ_sf UniProtKB/TrEMBL
KEGG Report cfa:479190 UniProtKB/TrEMBL
NCBI Gene MTR ENTREZGENE
PANTHER METHIONINE SYNTHASE UniProtKB/TrEMBL
  METHIONINE SYNTHASE UniProtKB/TrEMBL
Pfam B12-binding UniProtKB/TrEMBL
  B12-binding_2 UniProtKB/TrEMBL
  Met_synt_B12 UniProtKB/TrEMBL
  Pterin_bind UniProtKB/TrEMBL
  S-methyl_trans UniProtKB/TrEMBL
PIRSF MetH UniProtKB/TrEMBL
PROSITE ADOMET_ACTIVATION UniProtKB/TrEMBL
  B12_BINDING UniProtKB/TrEMBL
  B12_BINDING_NTER UniProtKB/TrEMBL
  HCY UniProtKB/TrEMBL
  PTERIN_BINDING UniProtKB/TrEMBL
SMART B12-binding_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47644 UniProtKB/TrEMBL
  SSF51717 UniProtKB/TrEMBL
  SSF52242 UniProtKB/TrEMBL
  SSF56507 UniProtKB/TrEMBL
  SSF82282 UniProtKB/TrEMBL
UniProt A0A8C0LLV6 ENTREZGENE
  A0A8C0MUB7_CANLF UniProtKB/TrEMBL
  A0A8C0PPH6_CANLF UniProtKB/TrEMBL
  A0A8C0PSF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PSR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PT02_CANLF UniProtKB/TrEMBL
  A0A8C0Q477 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MG95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLE3_CANLF UniProtKB/TrEMBL
  A0A8P0NCJ6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43491 ENTREZGENE