RCCD1 (RCC1 domain containing 1) - Rat Genome Database

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Gene: RCCD1 (RCC1 domain containing 1) Canis lupus familiaris
Analyze
Symbol: RCCD1
Name: RCC1 domain containing 1
RGD ID: 12232067
Description: ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN cytosol (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RCC1 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,287,343 - 53,292,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,925,094 - 55,931,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,703,475 - 53,709,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,704,174 - 53,709,220 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,222,739 - 53,227,948 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,433,859 - 53,440,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,774,339 - 53,780,725 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
plasma membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
RCCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,287,343 - 53,292,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,925,094 - 55,931,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,703,475 - 53,709,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,704,174 - 53,709,220 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,222,739 - 53,227,948 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,433,859 - 53,440,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,774,339 - 53,780,725 (-)NCBIUU_Cfam_GSD_1.0
RCCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381590,954,884 - 90,963,125 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1590,954,881 - 90,963,125 (+)EnsemblGRCh38hg38GRCh38
GRCh371591,498,114 - 91,506,355 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361589,299,110 - 89,307,359 (+)NCBINCBI36Build 36hg18NCBI36
Celera1567,907,324 - 67,915,571 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1567,609,125 - 67,617,372 (+)NCBIHuRef
CHM1_11591,339,718 - 91,347,965 (+)NCBICHM1_1
T2T-CHM13v2.01588,714,467 - 88,722,708 (+)NCBIT2T-CHM13v2.0
Rccd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,944,339 - 79,974,512 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,942,977 - 79,974,202 (-)EnsemblGRCm39 Ensembl
GRCm38780,294,591 - 80,324,687 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,293,229 - 80,324,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv37787,461,502 - 87,469,340 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,190,147 - 80,197,937 (-)NCBIMGSCv36mm8
MGSCv36769,811,614 - 69,819,408 (-)NCBIMGSCv36mm8
Celera777,717,245 - 77,726,089 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.64NCBI
Rccd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,681,124 - 143,690,817 (-)NCBIGRCr8
mRatBN7.21134,271,870 - 134,281,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,271,857 - 134,280,781 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01142,109,066 - 142,118,452 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,109,252 - 142,114,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01143,061,330 - 143,070,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41136,134,226 - 136,139,608 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11136,212,628 - 136,222,391 (-)NCBI
Celera1126,332,726 - 126,341,496 (-)NCBICelera
Cytogenetic Map1q31NCBI
Rccd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,014,340 - 15,019,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,013,595 - 15,020,038 (+)NCBIChiLan1.0ChiLan1.0
RCCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21680,508,691 - 80,542,204 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11584,207,322 - 84,243,126 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01569,648,220 - 69,682,408 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11588,845,268 - 88,856,326 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1588,847,116 - 88,852,057 (+)Ensemblpanpan1.1panPan2
Rccd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,262,560 - 130,273,451 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648316,065,512 - 16,070,424 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648316,049,288 - 16,071,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl753,547,077 - 53,558,076 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1753,546,666 - 53,557,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2758,578,216 - 58,588,277 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RCCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,895,873 - 8,907,436 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,899,949 - 8,907,248 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605937,818,646 - 37,840,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rccd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,293,628 - 17,298,435 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476817,284,150 - 17,300,123 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RCCD1
54 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845003027   ⟹   ENSCAFP00845002417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,704,174 - 53,709,220 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003051   ⟹   ENSCAFP00845002436
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,704,174 - 53,708,762 (-)Ensembl
RefSeq Acc Id: XM_038471947   ⟹   XP_038327875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1353,222,739 - 53,227,948 (-)NCBI
RefSeq Acc Id: XM_038475550   ⟹   XP_038331478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha355,925,094 - 55,931,476 (-)NCBI
RefSeq Acc Id: XM_038532877   ⟹   XP_038388805
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0353,774,339 - 53,780,725 (-)NCBI
RefSeq Acc Id: XM_038597202   ⟹   XP_038453130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0353,433,859 - 53,440,230 (-)NCBI
RefSeq Acc Id: XM_038661382   ⟹   XP_038517310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0353,703,475 - 53,709,860 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038327875   ⟸   XM_038471947
RefSeq Acc Id: XP_038453130   ⟸   XM_038597202
RefSeq Acc Id: XP_038517310   ⟸   XM_038661382
- UniProtKB: A0A8I3MGT9 (UniProtKB/TrEMBL),   A0A8C0RW52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038331478   ⟸   XM_038475550
- UniProtKB: A0A8P0PLD0 (UniProtKB/TrEMBL),   A0A8C0RW52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388805   ⟸   XM_038532877
- UniProtKB: A0A8C0RW52 (UniProtKB/TrEMBL),   A0A8P0PLD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002417   ⟸   ENSCAFT00845003027
RefSeq Acc Id: ENSCAFP00845002436   ⟸   ENSCAFT00845003051

Promoters
RGD ID:13682755
Promoter ID:EPDNEW_C823
Type:single initiation site
Name:RCCD1_1
Description:RCC1 domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1353,292,683 - 53,292,743EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000050337 UniProtKB/TrEMBL
  ENSCAFG00040002501 UniProtKB/TrEMBL
  ENSCAFG00845001726 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000109795.1 UniProtKB/TrEMBL
  ENSCAFT00040004780.1 UniProtKB/TrEMBL
  ENSCAFT00845003027 ENTREZGENE
  ENSCAFT00845003027.1 UniProtKB/TrEMBL
  ENSCAFT00845003051.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.30 UniProtKB/TrEMBL
InterPro RCC1/BLIP-II UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
NCBI Gene RCCD1 ENTREZGENE
PANTHER RCC1 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  RCC1 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam RCC1 UniProtKB/TrEMBL
PRINTS RCCNDNSATION UniProtKB/TrEMBL
PROSITE RCC1_2 UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50985 UniProtKB/TrEMBL
UniProt A0A8C0RW52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MGT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRQ0_CANLF UniProtKB/TrEMBL
  A0A8P0PLD0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45442 ENTREZGENE