TRIM27 (tripartite motif containing 27) - Rat Genome Database

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Gene: TRIM27 (tripartite motif containing 27) Canis lupus familiaris
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Symbol: TRIM27
Name: tripartite motif containing 27
RGD ID: 12229993
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of viral release from host cell (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: zinc finger protein RFP; zinc finger protein RFP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,904,381 - 25,922,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,905,396 - 25,923,336 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,777,587 - 25,795,612 (-)NCBI
ROS_Cfam_1.03526,199,826 - 26,217,843 (-)NCBI
UMICH_Zoey_3.13525,862,428 - 25,880,441 (-)NCBI
UNSW_CanFamBas_1.03525,918,116 - 25,936,647 (-)NCBI
UU_Cfam_GSD_1.03527,389,980 - 27,408,261 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (IBA)
endosome  (IEA)
fibrillar center  (IEA)
nuclear membrane  (ISO)
nucleolus  (ISO)
nucleoplasm  (IBA,ISO)
nucleus  (ISO)
retromer complex  (IEA,ISO)

References

Genomics

Comparative Map Data
TRIM27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,904,381 - 25,922,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,905,396 - 25,923,336 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,777,587 - 25,795,612 (-)NCBI
ROS_Cfam_1.03526,199,826 - 26,217,843 (-)NCBI
UMICH_Zoey_3.13525,862,428 - 25,880,441 (-)NCBI
UNSW_CanFamBas_1.03525,918,116 - 25,936,647 (-)NCBI
UU_Cfam_GSD_1.03527,389,980 - 27,408,261 (-)NCBI
TRIM27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl628,903,002 - 28,923,988 (-)EnsemblGRCh38hg38GRCh38
GRCh38628,903,002 - 28,923,985 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37628,870,779 - 28,891,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,978,758 - 28,999,747 (-)NCBINCBI36hg18NCBI36
Build 34628,978,758 - 28,999,744NCBI
Celera630,476,904 - 30,497,881 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef628,678,679 - 28,699,726 (-)NCBIHuRef
CHM1_1628,873,036 - 28,894,024 (-)NCBICHM1_1
Trim27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,363,570 - 21,378,893 (+)NCBIGRCm39mm39
GRCm39 Ensembl1321,363,615 - 21,378,894 (+)Ensembl
GRCm381321,179,450 - 21,194,723 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,179,445 - 21,194,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv371321,271,828 - 21,284,726 (+)NCBIGRCm37mm9NCBIm37
MGSCv361321,187,827 - 21,200,322 (+)NCBImm8
Celera1321,444,935 - 21,457,832 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.67NCBI
Trim27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21743,538,282 - 43,550,633 (-)NCBI
Rnor_6.0 Ensembl1745,613,864 - 45,626,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01745,613,863 - 45,626,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01757,844,089 - 57,856,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41751,192,286 - 51,204,942 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11751,195,447 - 51,214,144 (-)NCBI
Celera1752,928,787 - 52,941,136 (+)NCBICelera
Cytogenetic Map17q11NCBI
Trim27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546513,890,900 - 13,903,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546513,891,001 - 13,902,767 (-)NCBIChiLan1.0ChiLan1.0
TRIM27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1629,390,423 - 29,411,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl629,390,423 - 29,411,308 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0628,722,505 - 28,743,484 (-)NCBIMhudiblu_PPA_v0panPan3
Trim27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494629,181,649 - 29,203,486 (-)NCBI
SpeTri2.0NW_004936914245,348 - 263,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2724,432,798 - 24,451,382 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM27
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11743,647,965 - 43,670,945 (+)NCBI
ChlSab1.1 Ensembl1743,647,951 - 43,670,978 (+)Ensembl
Vero_WHO_p1.0NW_02366604428,591,242 - 28,614,234 (-)NCBI
Trim27
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475624,897,206 - 24,908,449 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000019086   ⟹   ENSCAFP00000017692
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3525,905,396 - 25,923,336 (-)Ensembl
RefSeq Acc Id: XM_005642447   ⟹   XP_005642504
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13525,904,381 - 25,922,531 (-)NCBI
Dog10K_Boxer_Tasha3525,777,587 - 25,795,612 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038446650   ⟹   XP_038302578
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03526,199,826 - 26,217,843 (-)NCBI
RefSeq Acc Id: XM_038520777   ⟹   XP_038376705
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13525,862,428 - 25,880,441 (-)NCBI
RefSeq Acc Id: XM_038584454   ⟹   XP_038440382
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03527,389,980 - 27,408,261 (-)NCBI
RefSeq Acc Id: XM_038648858   ⟹   XP_038504786
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03525,918,116 - 25,936,647 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005642504   ⟸   XM_005642447
- Sequence:
RefSeq Acc Id: ENSCAFP00000017692   ⟸   ENSCAFT00000019086
RefSeq Acc Id: XP_038376705   ⟸   XM_038520777
RefSeq Acc Id: XP_038504786   ⟸   XM_038648858
RefSeq Acc Id: XP_038302578   ⟸   XM_038446650
RefSeq Acc Id: XP_038440382   ⟸   XM_038584454
Protein Domains
B box-type   B30.2/SPRY

Promoters
RGD ID:13689043
Promoter ID:EPDNEW_C7110
Type:initiation region
Name:TRIM27_1
Description:tripartite motif containing 27
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13525,922,940 - 25,923,000EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012020 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000017692 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019086 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY/PRY_TRIM27 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_B-box_chordata UniProtKB/TrEMBL
NCBI Gene TRIM27 ENTREZGENE
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PRINTS BBOXZNFINGER UniProtKB/TrEMBL
  BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt F1PCA2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:97226 ENTREZGENE