FGF16 (fibroblast growth factor 16) - Rat Genome Database

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Gene: FGF16 (fibroblast growth factor 16) Canis lupus familiaris
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Symbol: FGF16
Name: fibroblast growth factor 16
RGD ID: 12229920
Description: ENCODES a protein that exhibits fibroblast growth factor receptor binding (inferred); growth factor activity (inferred); INVOLVED IN fibroblast growth factor receptor signaling pathway (ortholog); positive regulation of brown fat cell proliferation (ortholog); regulation of endothelial cell proliferation (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autistic disorder (ortholog); syndactyly type 8 (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X59,738,512 - 59,748,188 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX59,739,398 - 59,748,204 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX50,753,734 - 50,762,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X60,977,750 - 60,986,950 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX60,977,988 - 60,986,988 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X58,685,639 - 58,694,838 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X60,291,788 - 60,301,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X59,883,445 - 59,892,646 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FGF16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X59,738,512 - 59,748,188 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX59,739,398 - 59,748,204 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX50,753,734 - 50,762,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X60,977,750 - 60,986,950 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX60,977,988 - 60,986,988 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X58,685,639 - 58,694,838 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X60,291,788 - 60,301,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X59,883,445 - 59,892,646 (+)NCBIUU_Cfam_GSD_1.0
FGF16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X77,447,389 - 77,457,278 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX77,447,389 - 77,457,278 (+)EnsemblGRCh38hg38GRCh38
GRCh37X76,709,643 - 76,712,769 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X76,596,304 - 76,598,669 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X76,515,791 - 76,518,158NCBI
CeleraX76,943,778 - 76,952,520 (+)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX70,299,289 - 70,300,827 (+)NCBIHuRef
CHM1_1X76,602,327 - 76,604,695 (+)NCBICHM1_1
T2T-CHM13v2.0X75,884,945 - 75,894,834 (+)NCBIT2T-CHM13v2.0
Fgf16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X104,808,083 - 104,820,138 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX104,807,885 - 104,818,545 (+)EnsemblGRCm39 Ensembl
GRCm38X105,764,477 - 105,776,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX105,764,279 - 105,774,939 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X102,959,816 - 102,971,871 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X101,967,260 - 101,976,899 (+)NCBIMGSCv36mm8
CeleraX92,618,588 - 92,630,442 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.2NCBI
Fgf16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X74,882,863 - 74,893,598 (+)NCBIGRCr8
mRatBN7.2X70,816,658 - 70,828,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX70,817,433 - 70,878,717 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX72,326,620 - 72,336,209 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X75,826,927 - 75,836,512 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,390,086 - 73,399,673 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X76,786,728 - 76,796,311 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX76,786,466 - 76,797,069 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X55,910,573 - 55,920,156 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X93,870,484 - 93,880,067 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X93,943,654 - 93,954,254 (+)NCBI
CeleraX72,132,220 - 72,141,534 (+)NCBICelera
Cytogenetic MapXq22NCBI
Fgf16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955557905,576 - 919,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955557906,361 - 915,590 (+)NCBIChiLan1.0ChiLan1.0
FGF16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X77,023,718 - 77,033,339 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X77,027,329 - 77,036,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X66,623,050 - 66,634,325 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X76,737,733 - 76,746,816 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX76,737,733 - 76,749,731 (+)Ensemblpanpan1.1panPan2
Fgf16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X42,484,065 - 42,493,677 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366832,454,067 - 2,463,635 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366832,454,067 - 2,463,653 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX61,552,460 - 61,561,954 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X61,551,487 - 61,561,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X70,358,080 - 70,368,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X66,389,983 - 66,401,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606715,117,006 - 15,126,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248363,521,243 - 3,541,824 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248363,521,170 - 3,541,844 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FGF16
29 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 1 1 9 6 9 5 6
Below cutoff 4 4 11 4 6 4 5 3 7 5

Sequence


RefSeq Acc Id: ENSCAFT00000047376   ⟹   ENSCAFP00000042079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX59,739,398 - 59,748,204 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845053785   ⟹   ENSCAFP00845042270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX60,977,988 - 60,986,988 (+)Ensembl
RefSeq Acc Id: XM_038448995   ⟹   XP_038304923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X60,977,750 - 60,986,950 (+)NCBI
RefSeq Acc Id: XM_038524968   ⟹   XP_038380896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X58,685,639 - 58,694,838 (+)NCBI
RefSeq Acc Id: XM_038586536   ⟹   XP_038442464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X59,883,445 - 59,892,646 (+)NCBI
RefSeq Acc Id: XM_038650952   ⟹   XP_038506880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X60,291,788 - 60,301,024 (+)NCBI
RefSeq Acc Id: XM_549094   ⟹   XP_549094
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X59,738,512 - 59,748,188 (+)NCBI
Dog10K_Boxer_TashaX50,753,734 - 50,762,935 (+)NCBI
Sequence:
RefSeq Acc Id: XP_549094   ⟸   XM_549094
- UniProtKB: J9P8K0 (UniProtKB/TrEMBL),   A0A8C0LPI5 (UniProtKB/TrEMBL),   A0A8C0SP20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000042079   ⟸   ENSCAFT00000047376
RefSeq Acc Id: XP_038380896   ⟸   XM_038524968
RefSeq Acc Id: XP_038506880   ⟸   XM_038650952
RefSeq Acc Id: XP_038304923   ⟸   XM_038448995
- UniProtKB: A0A8C0LPI5 (UniProtKB/TrEMBL),   J9P8K0 (UniProtKB/TrEMBL),   A0A8C0SP20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442464   ⟸   XM_038586536
- UniProtKB: A0A8C0LPI5 (UniProtKB/TrEMBL),   A0A8C0SP20 (UniProtKB/TrEMBL),   J9P8K0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042270   ⟸   ENSCAFT00845053785


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029141 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040015368 UniProtKB/TrEMBL
  ENSCAFG00845030312 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000047376.3 UniProtKB/TrEMBL
  ENSCAFT00040028315.1 UniProtKB/TrEMBL
  ENSCAFT00845053785 ENTREZGENE
  ENSCAFT00845053785.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
KEGG Report cfa:491974 UniProtKB/TrEMBL
NCBI Gene FGF16 ENTREZGENE
PANTHER PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF27 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
UniProt A0A8C0LPI5 ENTREZGENE
  A0A8C0SP20 ENTREZGENE, UniProtKB/TrEMBL
  J9P8K0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40843 ENTREZGENE