PAN3 (poly(A) specific ribonuclease subunit PAN3) - Rat Genome Database

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Gene: PAN3 (poly(A) specific ribonuclease subunit PAN3) Canis lupus familiaris
Analyze
Symbol: PAN3
Name: poly(A) specific ribonuclease subunit PAN3
RGD ID: 12229209
Description: ENCODES a protein that exhibits poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); positive regulation of cytoplasmic mRNA processing body assembly (ortholog); protein targeting (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); P-body (inferred); PAN complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PAB-dependent poly(A)-specific ribonuclease subunit PAN3; PAN2-PAN3 deadenylation complex subunit PAN3; PAN3 poly(A) specific ribonuclease subunit; PAN3 poly(A) specific ribonuclease subunit homolog; PAN3 polyA specific ribonuclease subunit homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,416,321 - 11,550,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2511,479,225 - 11,613,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02511,544,373 - 11,678,148 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12511,440,197 - 11,574,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,432,789 - 11,566,165 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02511,474,666 - 11,609,590 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
P-body  (IEA)
PAN complex  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PAN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,416,321 - 11,550,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2511,479,225 - 11,613,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02511,544,373 - 11,678,148 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12511,440,197 - 11,574,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,432,789 - 11,566,165 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02511,474,666 - 11,609,590 (-)NCBIUU_Cfam_GSD_1.0
PAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381328,138,193 - 28,295,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1328,138,506 - 28,295,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371328,712,682 - 28,869,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,646,417 - 27,767,472 (+)NCBINCBI36Build 36hg18NCBI36
Celera139,787,744 - 9,944,258 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,533,856 - 9,690,407 (+)NCBIHuRef
CHM1_11328,681,211 - 28,837,730 (+)NCBICHM1_1
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBIT2T-CHM13v2.0
Pan3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,363,018 - 147,485,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,366,971 - 147,485,312 (+)EnsemblGRCm39 Ensembl
GRCm385147,426,208 - 147,548,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,430,161 - 147,548,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv375148,242,156 - 148,360,077 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,741,238 - 147,858,845 (+)NCBIMGSCv36mm8
Celera5145,424,005 - 145,541,898 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.93NCBI
Pan3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,512,835 - 12,637,066 (-)NCBIGRCr8
mRatBN7.2127,476,707 - 7,595,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,476,697 - 7,599,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0129,214,116 - 9,331,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,216,536 - 9,331,195 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,333,266 - 11,449,831 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,046,162 - 8,165,081 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera129,218,136 - 9,336,110 (-)NCBICelera
Cytogenetic Map12p11NCBI
Pan3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,500,748 - 7,647,255 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554977,500,478 - 7,646,541 (+)NCBIChiLan1.0ChiLan1.0
PAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,723,636 - 27,886,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,827,987 - 18,990,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,420,405 - 9,579,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11327,797,325 - 27,921,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,798,607 - 27,921,266 (+)Ensemblpanpan1.1panPan2
Pan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945172,518,051 - 172,654,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647223,297,847 - 23,431,982 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647223,297,679 - 23,434,107 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,487,138 - 5,614,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,487,019 - 5,614,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,173,907 - 5,301,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.137,249,596 - 7,405,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl37,249,298 - 7,405,910 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605736,983,767 - 37,141,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pan3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,227,308 - 10,364,522 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,224,772 - 10,364,816 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAN3
967 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 16 6 6 11 8 10 6
Low 5 6 6 6 6 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005635505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014107388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_543150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002619014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005301582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005344586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005378426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000010833   ⟹   ENSCAFP00000010037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2511,418,163 - 11,550,810 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000049846   ⟹   ENSCAFP00000043143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072245   ⟹   ENSCAFP00000048552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080154   ⟹   ENSCAFP00000064424
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845042156   ⟹   ENSCAFP00845033063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,130 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845042367   ⟹   ENSCAFP00845033214
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,130 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845042526   ⟹   ENSCAFP00845033335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,005 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845042617   ⟹   ENSCAFP00845033413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2511,545,712 - 11,678,130 (-)Ensembl
RefSeq Acc Id: XM_005635505   ⟹   XP_005635562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,416,321 - 11,550,830 (-)NCBI
Dog10K_Boxer_Tasha2511,479,225 - 11,613,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005635506   ⟹   XP_005635563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,416,321 - 11,550,830 (-)NCBI
Dog10K_Boxer_Tasha2511,479,225 - 11,613,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005635507   ⟹   XP_005635564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,416,321 - 11,550,830 (-)NCBI
Dog10K_Boxer_Tasha2511,479,225 - 11,613,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005635508   ⟹   XP_005635565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,416,321 - 11,550,685 (-)NCBI
Dog10K_Boxer_Tasha2511,479,225 - 11,613,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107388   ⟹   XP_013962863
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,419,141 - 11,550,830 (-)NCBI
Dog10K_Boxer_Tasha2511,482,081 - 11,613,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038434970   ⟹   XP_038290898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,544,373 - 11,678,136 (-)NCBI
RefSeq Acc Id: XM_038434971   ⟹   XP_038290899
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,544,373 - 11,678,138 (-)NCBI
RefSeq Acc Id: XM_038434972   ⟹   XP_038290900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,547,184 - 11,678,005 (-)NCBI
RefSeq Acc Id: XM_038434973   ⟹   XP_038290901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,544,373 - 11,678,137 (-)NCBI
RefSeq Acc Id: XM_038434974   ⟹   XP_038290902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,544,373 - 11,678,005 (-)NCBI
RefSeq Acc Id: XM_038434975   ⟹   XP_038290903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,547,232 - 11,678,144 (-)NCBI
RefSeq Acc Id: XM_038509955   ⟹   XP_038365883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,440,197 - 11,574,213 (-)NCBI
RefSeq Acc Id: XM_038509956   ⟹   XP_038365884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,440,197 - 11,574,215 (-)NCBI
RefSeq Acc Id: XM_038509957   ⟹   XP_038365885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,443,006 - 11,574,080 (-)NCBI
RefSeq Acc Id: XM_038509958   ⟹   XP_038365886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,440,197 - 11,574,214 (-)NCBI
RefSeq Acc Id: XM_038509959   ⟹   XP_038365887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,440,197 - 11,574,080 (-)NCBI
RefSeq Acc Id: XM_038509960   ⟹   XP_038365888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,443,054 - 11,574,221 (-)NCBI
RefSeq Acc Id: XM_038573386   ⟹   XP_038429314
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,474,666 - 11,609,576 (-)NCBI
RefSeq Acc Id: XM_038573387   ⟹   XP_038429315
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,474,666 - 11,609,580 (-)NCBI
RefSeq Acc Id: XM_038573388   ⟹   XP_038429316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,477,474 - 11,609,448 (-)NCBI
RefSeq Acc Id: XM_038573389   ⟹   XP_038429317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,474,666 - 11,609,579 (-)NCBI
RefSeq Acc Id: XM_038573390   ⟹   XP_038429318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,474,666 - 11,609,448 (-)NCBI
RefSeq Acc Id: XM_038573391   ⟹   XP_038429319
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,477,524 - 11,609,586 (-)NCBI
RefSeq Acc Id: XM_038637680   ⟹   XP_038493608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02511,432,789 - 11,566,165 (-)NCBI
RefSeq Acc Id: XM_543150   ⟹   XP_543150
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,419,126 - 11,550,685 (-)NCBI
Dog10K_Boxer_Tasha2511,482,033 - 11,613,585 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002619014
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12511,429,601 - 11,550,830 (-)NCBI
Dog10K_Boxer_Tasha2511,492,513 - 11,613,731 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005301582
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02511,557,352 - 11,678,148 (-)NCBI
RefSeq Acc Id: XR_005344586
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12511,453,177 - 11,574,226 (-)NCBI
RefSeq Acc Id: XR_005378426
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02511,488,201 - 11,609,590 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005635562 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635563 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635564 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635565 (Get FASTA)   NCBI Sequence Viewer  
  XP_013962863 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290898 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290899 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290900 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290901 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290902 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290903 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429314 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429318 (Get FASTA)   NCBI Sequence Viewer  
  XP_038429319 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493608 (Get FASTA)   NCBI Sequence Viewer  
  XP_543150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000010037.5
  ENSCAFP00000043143.3
  ENSCAFP00000048552.2
  ENSCAFP00000064424.2
  ENSCAFP00030033436.1
  ENSCAFP00030033558.1
  ENSCAFP00030033682.1
  ENSCAFP00040030137.1
  ENSCAFP00040030226.1
  ENSCAFP00040030370.1
  ENSCAFP00040030506.1
  ENSCAFP00040030610.1
  ENSCAFP00845033063
  ENSCAFP00845033063.1
  ENSCAFP00845033214
  ENSCAFP00845033214.1
  ENSCAFP00845033335
  ENSCAFP00845033335.1
  ENSCAFP00845033413.1
RefSeq Acc Id: XP_005635565   ⟸   XM_005635508
- Peptide Label: isoform X4
- UniProtKB: A0A8I3PLB0 (UniProtKB/TrEMBL),   A0A8C0LMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635564   ⟸   XM_005635507
- Peptide Label: isoform X3
- UniProtKB: A0A8C0T424 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_543150   ⟸   XM_543150
- Peptide Label: isoform X6
- UniProtKB: A0A8I3PQ88 (UniProtKB/TrEMBL),   A0A8C0T3M3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635563   ⟸   XM_005635506
- Peptide Label: isoform X2
- UniProtKB: A0A8C0T523 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635562   ⟸   XM_005635505
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PNQ2 (UniProtKB/TrEMBL),   A0A8C0T523 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013962863   ⟸   XM_014107388
- Peptide Label: isoform X5
- UniProtKB: A0A8C0T3U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000043143   ⟸   ENSCAFT00000049846
RefSeq Acc Id: ENSCAFP00000064424   ⟸   ENSCAFT00000080154
RefSeq Acc Id: ENSCAFP00000010037   ⟸   ENSCAFT00000010833
RefSeq Acc Id: ENSCAFP00000048552   ⟸   ENSCAFT00000072245
RefSeq Acc Id: XP_038365884   ⟸   XM_038509956
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038365886   ⟸   XM_038509958
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038365883   ⟸   XM_038509955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038365887   ⟸   XM_038509959
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038365885   ⟸   XM_038509957
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038365888   ⟸   XM_038509960
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038493608   ⟸   XM_038637680
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038290899   ⟸   XM_038434971
- Peptide Label: isoform X2
- UniProtKB: A0A8C0T523 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290901   ⟸   XM_038434973
- Peptide Label: isoform X3
- UniProtKB: A0A8C0T424 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290898   ⟸   XM_038434970
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PNQ2 (UniProtKB/TrEMBL),   A0A8C0T523 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290902   ⟸   XM_038434974
- Peptide Label: isoform X4
- UniProtKB: A0A8I3PLB0 (UniProtKB/TrEMBL),   A0A8C0LMM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290900   ⟸   XM_038434972
- Peptide Label: isoform X6
- UniProtKB: A0A8I3PQ88 (UniProtKB/TrEMBL),   A0A8C0T3M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290903   ⟸   XM_038434975
- Peptide Label: isoform X5
- UniProtKB: A0A8C0T3U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429315   ⟸   XM_038573387
- Peptide Label: isoform X2
- UniProtKB: A0A8C0T523 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429317   ⟸   XM_038573389
- Peptide Label: isoform X3
- UniProtKB: A0A8C0T424 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429314   ⟸   XM_038573386
- Peptide Label: isoform X1
- UniProtKB: A0A8C0T523 (UniProtKB/TrEMBL),   A0A8I3PNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429318   ⟸   XM_038573390
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LMM0 (UniProtKB/TrEMBL),   A0A8I3PLB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429316   ⟸   XM_038573388
- Peptide Label: isoform X6
- UniProtKB: A0A8C0T3M3 (UniProtKB/TrEMBL),   A0A8I3PQ88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429319   ⟸   XM_038573391
- Peptide Label: isoform X5
- UniProtKB: A0A8C0T3U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033063   ⟸   ENSCAFT00845042156
RefSeq Acc Id: ENSCAFP00845033413   ⟸   ENSCAFT00845042617
RefSeq Acc Id: ENSCAFP00845033214   ⟸   ENSCAFT00845042367
RefSeq Acc Id: ENSCAFP00845033335   ⟸   ENSCAFT00845042526
Protein Domains
C3H1-type   Protein kinase   SUZ-C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006733 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020880 UniProtKB/TrEMBL
  ENSCAFG00040018717 UniProtKB/TrEMBL
  ENSCAFG00845023866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010833.5 UniProtKB/TrEMBL
  ENSCAFT00000049846.4 UniProtKB/TrEMBL
  ENSCAFT00000072245.2 UniProtKB/TrEMBL
  ENSCAFT00000080154.2 UniProtKB/TrEMBL
  ENSCAFT00030038330.1 UniProtKB/TrEMBL
  ENSCAFT00030038465.1 UniProtKB/TrEMBL
  ENSCAFT00030038605.1 UniProtKB/TrEMBL
  ENSCAFT00040034613.1 UniProtKB/TrEMBL
  ENSCAFT00040034716.1 UniProtKB/TrEMBL
  ENSCAFT00040034879.1 UniProtKB/TrEMBL
  ENSCAFT00040035042.1 UniProtKB/TrEMBL
  ENSCAFT00040035158.1 UniProtKB/TrEMBL
  ENSCAFT00845042156 ENTREZGENE
  ENSCAFT00845042156.1 UniProtKB/TrEMBL
  ENSCAFT00845042367 ENTREZGENE
  ENSCAFT00845042367.1 UniProtKB/TrEMBL
  ENSCAFT00845042526 ENTREZGENE
  ENSCAFT00845042526.1 UniProtKB/TrEMBL
  ENSCAFT00845042617.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.3700 UniProtKB/TrEMBL
  1.20.5.5160 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  PAN3 UniProtKB/TrEMBL
  Pan3_PK UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  SUZ-C UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
KEGG Report cfa:486024 UniProtKB/TrEMBL
NCBI Gene PAN3 ENTREZGENE
PANTHER PAN2-PAN3 DEADENYLATION COMPLEX SUBUNIT PAN3 UniProtKB/TrEMBL
  PTHR12272 UniProtKB/TrEMBL
Pfam Pan3_PK UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  SUZ_C UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
  SSF90229 UniProtKB/TrEMBL
UniProt A0A8C0LMM0 ENTREZGENE
  A0A8C0NXR3_CANLF UniProtKB/TrEMBL
  A0A8C0P244_CANLF UniProtKB/TrEMBL
  A0A8C0P402_CANLF UniProtKB/TrEMBL
  A0A8C0T3M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T3U0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T424 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T523 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T6C5_CANLF UniProtKB/TrEMBL
  A0A8I3PLB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PNQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQ88 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q0B1_CANLF UniProtKB/TrEMBL
  A0A8P0SC52_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0NTK5 UniProtKB/TrEMBL
  A0A8P0NYK8 UniProtKB/TrEMBL
  A0A8P0PD75 UniProtKB/TrEMBL
VGNC ID VGNC:59088 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 PAN3  poly(A) specific ribonuclease subunit PAN3    PAN3 poly(A) specific ribonuclease subunit  Symbol and/or name change 5135510 APPROVED