LBH (LBH regulator of WNT signaling pathway) - Rat Genome Database

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Gene: LBH (LBH regulator of WNT signaling pathway) Canis lupus familiaris
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Symbol: LBH
Name: LBH regulator of WNT signaling pathway
RGD ID: 12228997
Description: INVOLVED IN mammary gland development (inferred); mammary gland epithelial cell differentiation (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); protein-containing complex (inferred); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: limb bud and heart development; limb bud and heart development homolog; protein LBH
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11723,939,135 - 23,969,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1723,938,772 - 24,022,140 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1723,736,913 - 23,762,365 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01724,505,537 - 24,531,139 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1724,500,181 - 24,583,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11723,811,250 - 23,836,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01723,874,403 - 23,899,677 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01723,973,706 - 23,999,175 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LBH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11723,939,135 - 23,969,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1723,938,772 - 24,022,140 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1723,736,913 - 23,762,365 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01724,505,537 - 24,531,139 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1724,500,181 - 24,583,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11723,811,250 - 23,836,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01723,874,403 - 23,899,677 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01723,973,706 - 23,999,175 (+)NCBIUU_Cfam_GSD_1.0
LBH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38230,231,534 - 30,260,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl230,231,534 - 30,323,730 (+)EnsemblGRCh38hg38GRCh38
GRCh37230,454,400 - 30,482,894 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36230,307,901 - 30,336,403 (+)NCBINCBI36Build 36hg18NCBI36
Celera230,288,761 - 30,325,820 (+)NCBICelera
Cytogenetic Map2p23.1NCBI
HuRef230,192,937 - 30,221,438 (+)NCBIHuRef
CHM1_1230,384,624 - 30,413,128 (+)NCBICHM1_1
T2T-CHM13v2.0230,275,785 - 30,304,277 (+)NCBIT2T-CHM13v2.0
Lbh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391773,225,300 - 73,248,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1773,225,300 - 73,248,942 (+)EnsemblGRCm39 Ensembl
GRCm381772,918,305 - 72,941,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1772,918,305 - 72,941,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv371773,267,645 - 73,291,286 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361772,823,326 - 72,846,942 (+)NCBIMGSCv36mm8
Celera1777,201,369 - 77,224,975 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1744.73NCBI
Lbh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8628,321,040 - 28,344,855 (-)NCBIGRCr8
mRatBN7.2622,569,238 - 22,593,056 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl622,568,834 - 22,593,079 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx622,900,702 - 22,924,517 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0623,216,535 - 23,240,350 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0622,699,234 - 22,723,154 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0624,154,207 - 24,184,217 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl624,160,226 - 24,181,866 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0634,010,473 - 34,031,267 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4622,662,376 - 22,664,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera622,105,340 - 22,129,287 (-)NCBICelera
Cytogenetic Map6q14NCBI
Lbh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546912,054,727 - 12,078,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546912,054,727 - 12,078,796 (+)NCBIChiLan1.0ChiLan1.0
LBH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21296,240,784 - 96,269,439 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A96,244,758 - 96,273,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A30,244,474 - 30,273,048 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A30,320,247 - 30,348,139 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A30,320,249 - 30,411,779 (+)Ensemblpanpan1.1panPan2
Lbh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629268,040,234 - 68,088,820 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364932,750,745 - 2,776,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364932,750,745 - 2,776,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LBH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3109,078,286 - 109,105,529 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13109,078,285 - 109,113,536 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23115,765,351 - 115,795,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LBH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11477,278,080 - 77,306,721 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1477,280,510 - 77,306,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604534,778,813 - 34,807,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lbh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473812,106,236 - 12,130,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473812,098,227 - 12,129,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LBH
417 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000008549   ⟹   ENSCAFP00000007921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1723,944,166 - 23,968,255 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000061779   ⟹   ENSCAFP00000047275
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1723,944,713 - 23,968,255 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000079113   ⟹   ENSCAFP00000054997
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1723,938,772 - 23,968,255 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000079697   ⟹   ENSCAFP00000060935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1723,944,166 - 24,022,140 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020926   ⟹   ENSCAFP00845016438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1724,500,181 - 24,531,140 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020950   ⟹   ENSCAFP00845016459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1724,505,546 - 24,583,683 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020961   ⟹   ENSCAFP00845016470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1724,505,546 - 24,528,617 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020970   ⟹   ENSCAFP00845016477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1724,506,105 - 24,531,140 (+)Ensembl
RefSeq Acc Id: XM_038498619   ⟹   XP_038354547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11723,811,250 - 23,836,515 (+)NCBI
RefSeq Acc Id: XM_038561189   ⟹   XP_038417117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01723,973,706 - 23,999,175 (+)NCBI
RefSeq Acc Id: XM_038625237   ⟹   XP_038481165
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01723,874,403 - 23,899,677 (+)NCBI
RefSeq Acc Id: XM_038691164   ⟹   XP_038547092
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01724,505,537 - 24,531,139 (+)NCBI
RefSeq Acc Id: XM_848875   ⟹   XP_853968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11723,944,163 - 23,969,611 (+)NCBI
Dog10K_Boxer_Tasha1723,736,913 - 23,762,365 (+)NCBI
Sequence:
RefSeq Acc Id: XP_853968   ⟸   XM_848875
- UniProtKB: A0A8C0NJW8 (UniProtKB/TrEMBL),   A0A8C0LE36 (UniProtKB/TrEMBL),   A0A8C0R6P9 (UniProtKB/TrEMBL),   A0A8C0S9B7 (UniProtKB/TrEMBL),   A0A8I3NAN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000054997   ⟸   ENSCAFT00000079113
Ensembl Acc Id: ENSCAFP00000007921   ⟸   ENSCAFT00000008549
Ensembl Acc Id: ENSCAFP00000060935   ⟸   ENSCAFT00000079697
Ensembl Acc Id: ENSCAFP00000047275   ⟸   ENSCAFT00000061779
RefSeq Acc Id: XP_038354547   ⟸   XM_038498619
RefSeq Acc Id: XP_038481165   ⟸   XM_038625237
RefSeq Acc Id: XP_038547092   ⟸   XM_038691164
- UniProtKB: A0A8C0NJW8 (UniProtKB/TrEMBL),   A0A8C0LE36 (UniProtKB/TrEMBL),   A0A8C0R6P9 (UniProtKB/TrEMBL),   A0A8C0S9B7 (UniProtKB/TrEMBL),   A0A8I3NAN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417117   ⟸   XM_038561189
- UniProtKB: A0A8C0LE36 (UniProtKB/TrEMBL),   A0A8C0NJW8 (UniProtKB/TrEMBL),   A0A8C0R6P9 (UniProtKB/TrEMBL),   A0A8C0S9B7 (UniProtKB/TrEMBL),   A0A8I3NAN1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845016470   ⟸   ENSCAFT00845020961
Ensembl Acc Id: ENSCAFP00845016459   ⟸   ENSCAFT00845020950
Ensembl Acc Id: ENSCAFP00845016477   ⟸   ENSCAFT00845020970
Ensembl Acc Id: ENSCAFP00845016438   ⟸   ENSCAFT00845020926
Protein Domains
LBH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005309 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015331 UniProtKB/TrEMBL
  ENSCAFG00040010884 UniProtKB/TrEMBL
  ENSCAFG00845011780 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000008549.5 UniProtKB/TrEMBL
  ENSCAFT00000061779.2 UniProtKB/TrEMBL
  ENSCAFT00000079113.2 UniProtKB/TrEMBL
  ENSCAFT00000079697.2 UniProtKB/TrEMBL
  ENSCAFT00030028287.1 UniProtKB/TrEMBL
  ENSCAFT00030028320.1 UniProtKB/TrEMBL
  ENSCAFT00030028361.1 UniProtKB/TrEMBL
  ENSCAFT00040020164.1 UniProtKB/TrEMBL
  ENSCAFT00040020189.1 UniProtKB/TrEMBL
  ENSCAFT00040020227.1 UniProtKB/TrEMBL
  ENSCAFT00845020926.1 UniProtKB/TrEMBL
  ENSCAFT00845020950.1 UniProtKB/TrEMBL
  ENSCAFT00845020961.1 UniProtKB/TrEMBL
  ENSCAFT00845020970.1 UniProtKB/TrEMBL
InterPro LBH UniProtKB/TrEMBL
  LBH_dom UniProtKB/TrEMBL
  LBH_dom_prot UniProtKB/TrEMBL
KEGG Report cfa:611237 UniProtKB/TrEMBL
NCBI Gene LBH ENTREZGENE
PANTHER PROTEIN LBH UniProtKB/TrEMBL
  PTHR14987 UniProtKB/TrEMBL
Pfam Lbh UniProtKB/TrEMBL
PIRSF LBH UniProtKB/TrEMBL
PRINTS LBHPROTEIN UniProtKB/TrEMBL
UniProt A0A8C0LE36 ENTREZGENE
  A0A8C0NJW8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NMN4_CANLF UniProtKB/TrEMBL
  A0A8C0R6P9 ENTREZGENE
  A0A8C0S9B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N9E8_CANLF UniProtKB/TrEMBL
  A0A8I3NAN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NEP6_CANLF UniProtKB/TrEMBL
  A0A8I3RWR7_CANLF UniProtKB/TrEMBL
  A0A8P0SAU6_CANLF UniProtKB/TrEMBL
  A0A8P0T793_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:111546 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 LBH  LBH regulator of WNT signaling pathway    limb bud and heart development  Symbol and/or name change 5135510 APPROVED