MIR506 (microRNA mir-506) - Rat Genome Database

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Gene: MIR506 (microRNA mir-506) Canis lupus familiaris
Analyze
Symbol: MIR506 (Ensembl: cfa-mir-506)
Name: microRNA mir-506 (Ensembl:cfa-mir-506)
RGD ID: 12226776
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-506; microRNA 506
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X115,652,383 - 115,652,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX115,652,383 - 115,652,517 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX101,547,177 - 101,547,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X117,707,053 - 117,707,187 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X114,827,236 - 114,827,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X117,036,269 - 117,036,403 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X116,764,450 - 116,764,584 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:24692655  


Genomics

Comparative Map Data
MIR506
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X115,652,383 - 115,652,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX115,652,383 - 115,652,517 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX101,547,177 - 101,547,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X117,707,053 - 117,707,187 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X114,827,236 - 114,827,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X117,036,269 - 117,036,403 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X116,764,450 - 116,764,584 (-)NCBIUU_Cfam_GSD_1.0
MIR506
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X147,230,720 - 147,230,843 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX147,230,720 - 147,230,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37X146,312,238 - 146,312,361 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X146,119,929 - 146,120,052 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX146,667,176 - 146,667,299 (-)NCBICelera
Cytogenetic MapXq27.3NCBI
HuRefX135,273,222 - 135,273,345 (-)NCBIHuRef
CHM1_1X146,223,223 - 146,223,346 (-)NCBICHM1_1
T2T-CHM13v2.0X145,490,296 - 145,490,419 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in MIR506
2 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000067168
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX115,652,383 - 115,652,517 (-)Ensembl
RefSeq Acc Id: NR_128884
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X115,652,383 - 115,652,517 (-)NCBI
Dog10K_Boxer_TashaX101,547,177 - 101,547,311 (-)NCBI
ROS_Cfam_1.0X117,707,053 - 117,707,187 (-)NCBI
UMICH_Zoey_3.1X114,827,236 - 114,827,370 (-)NCBI
UNSW_CanFamBas_1.0X117,036,269 - 117,036,403 (-)NCBI
UU_Cfam_GSD_1.0X116,764,450 - 116,764,584 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000049145 Ensembl
  ENSCAFG00845020317 ENTREZGENE
Ensembl Transcript ENSCAFT00845035784 ENTREZGENE
miRBase MI0028024 ENTREZGENE
NCBI Gene MIR506 ENTREZGENE
RNAcentral URS00007E4077 RNACentral
  URS00007E452C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR506  microRNA mir-506    microRNA 506  Symbol and/or name change 5135510 APPROVED