CA14 (carbonic anhydrase 14) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CA14 (carbonic anhydrase 14) Canis lupus familiaris
Analyze
Symbol: CA14
Name: carbonic anhydrase 14
RGD ID: 12226695
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carbonic anhydrase XIV
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,504,181 - 59,510,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,504,483 - 59,510,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,950,038 - 58,956,854 (+)NCBI
ROS_Cfam_1.01760,519,100 - 60,525,928 (+)NCBI
UMICH_Zoey_3.11759,349,547 - 59,356,380 (+)NCBI
UNSW_CanFamBas_1.01759,433,284 - 59,440,110 (+)NCBI
UU_Cfam_GSD_1.01760,161,286 - 60,168,105 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CA14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,504,181 - 59,510,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,504,483 - 59,510,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,950,038 - 58,956,854 (+)NCBI
ROS_Cfam_1.01760,519,100 - 60,525,928 (+)NCBI
UMICH_Zoey_3.11759,349,547 - 59,356,380 (+)NCBI
UNSW_CanFamBas_1.01759,433,284 - 59,440,110 (+)NCBI
UU_Cfam_GSD_1.01760,161,286 - 60,168,105 (+)NCBI
CA14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1150,257,251 - 150,265,078 (+)EnsemblGRCh38hg38GRCh38
GRCh381150,257,258 - 150,265,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371150,230,169 - 150,237,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,488,047 - 148,504,102 (+)NCBINCBI36hg18NCBI36
Build 341147,043,290 - 147,050,549NCBI
Celera1123,345,949 - 123,353,209 (+)NCBI
Cytogenetic Map1q21.2NCBI
HuRef1121,608,885 - 121,616,145 (+)NCBIHuRef
CHM1_11151,625,869 - 151,633,204 (+)NCBICHM1_1
Car14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,805,080 - 95,812,443 (-)NCBIGRCm39mm39
GRCm39 Ensembl395,805,080 - 95,812,003 (-)Ensembl
GRCm38395,897,768 - 95,905,117 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,897,768 - 95,904,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,701,723 - 95,708,562 (-)NCBIGRCm37mm9NCBIm37
MGSCv36395,983,205 - 95,990,044 (-)NCBImm8
Celera397,331,353 - 97,338,218 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
Ca14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22183,442,263 - 183,449,207 (-)NCBI
Rnor_6.0 Ensembl2198,010,349 - 198,016,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02198,010,142 - 198,017,635 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02217,500,302 - 217,507,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,683,916 - 190,690,229 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2175,971,924 - 175,978,237 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ca14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413510,089 - 516,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955413510,089 - 516,892 (-)NCBIChiLan1.0ChiLan1.0
CA14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11129,253,787 - 129,261,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,253,787 - 129,261,676 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01125,602,521 - 125,610,323 (+)NCBIMhudiblu_PPA_v0panPan3
Ca14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,514,788 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,221 - 552,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,821,578 - 98,828,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,821,577 - 98,828,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA14
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Ca14
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,011,094 - 18,018,585 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 5 6 6 6 6 1
Low 2 11 4 6 8 10 6
Below cutoff 5 6 2 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003639624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000018682   ⟹   ENSCAFP00000017307
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1759,504,483 - 59,510,127 (+)Ensembl
RefSeq Acc Id: XM_003639624   ⟹   XP_003639672
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,181 - 59,510,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022404958   ⟹   XP_022260666
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,181 - 59,510,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022404959   ⟹   XP_022260667
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,181 - 59,510,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022404960   ⟹   XP_022260668
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,181 - 59,510,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022404961   ⟹   XP_022260669
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,181 - 59,510,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038423038   ⟹   XP_038278966
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,519,104 - 60,525,928 (+)NCBI
RefSeq Acc Id: XM_038423039   ⟹   XP_038278967
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,519,111 - 60,525,928 (+)NCBI
RefSeq Acc Id: XM_038423040   ⟹   XP_038278968
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,519,104 - 60,525,928 (+)NCBI
RefSeq Acc Id: XM_038423041   ⟹   XP_038278969
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,519,100 - 60,525,928 (+)NCBI
RefSeq Acc Id: XM_038453078   ⟹   XP_038309006
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1758,950,042 - 58,956,854 (+)NCBI
RefSeq Acc Id: XM_038453079   ⟹   XP_038309007
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1758,950,049 - 58,956,854 (+)NCBI
RefSeq Acc Id: XM_038453080   ⟹   XP_038309008
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1758,950,042 - 58,956,854 (+)NCBI
RefSeq Acc Id: XM_038453081   ⟹   XP_038309009
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1758,950,038 - 58,956,854 (+)NCBI
RefSeq Acc Id: XM_038499537   ⟹   XP_038355465
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11759,349,551 - 59,356,380 (+)NCBI
RefSeq Acc Id: XM_038499538   ⟹   XP_038355466
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11759,349,558 - 59,356,380 (+)NCBI
RefSeq Acc Id: XM_038499539   ⟹   XP_038355467
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11759,349,550 - 59,356,380 (+)NCBI
RefSeq Acc Id: XM_038499540   ⟹   XP_038355468
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11759,349,547 - 59,356,380 (+)NCBI
RefSeq Acc Id: XM_038562109   ⟹   XP_038418037
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01760,161,290 - 60,168,105 (+)NCBI
RefSeq Acc Id: XM_038562110   ⟹   XP_038418038
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01760,161,297 - 60,168,105 (+)NCBI
RefSeq Acc Id: XM_038562111   ⟹   XP_038418039
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01760,161,290 - 60,168,105 (+)NCBI
RefSeq Acc Id: XM_038562112   ⟹   XP_038418040
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01760,161,286 - 60,168,105 (+)NCBI
RefSeq Acc Id: XM_038626205   ⟹   XP_038482133
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01759,433,288 - 59,440,110 (+)NCBI
RefSeq Acc Id: XM_038626206   ⟹   XP_038482134
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01759,433,295 - 59,440,110 (+)NCBI
RefSeq Acc Id: XM_038626207   ⟹   XP_038482135
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01759,433,288 - 59,440,110 (+)NCBI
RefSeq Acc Id: XM_038626208   ⟹   XP_038482136
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01759,433,284 - 59,440,110 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003639672   ⟸   XM_003639624
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022260666   ⟸   XM_022404958
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022260668   ⟸   XM_022404960
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022260667   ⟸   XM_022404959
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022260669   ⟸   XM_022404961
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCAFP00000017307   ⟸   ENSCAFT00000018682
RefSeq Acc Id: XP_038355468   ⟸   XM_038499540
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038355467   ⟸   XM_038499539
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038355465   ⟸   XM_038499537
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038355466   ⟸   XM_038499538
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038482136   ⟸   XM_038626208
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038482133   ⟸   XM_038626205
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038482135   ⟸   XM_038626207
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038482134   ⟸   XM_038626206
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038278969   ⟸   XM_038423041
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038278966   ⟸   XM_038423038
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038278968   ⟸   XM_038423040
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038278967   ⟸   XM_038423039
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038309009   ⟸   XM_038453081
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038309006   ⟸   XM_038453078
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038309008   ⟸   XM_038453080
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038309007   ⟸   XM_038453079
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038418040   ⟸   XM_038562112
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038418037   ⟸   XM_038562109
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038418039   ⟸   XM_038562111
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038418038   ⟸   XM_038562110
- Peptide Label: isoform X2
Protein Domains
Alpha-carbonic anhydrase

Promoters
RGD ID:13686384
Promoter ID:EPDNEW_C4451
Type:initiation region
Name:CA14_2
Description:carbonic anhydrase 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C4452  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,504,728 - 59,504,788EPDNEW
RGD ID:13686383
Promoter ID:EPDNEW_C4452
Type:single initiation site
Name:CA14_1
Description:carbonic anhydrase 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C4451  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,506,614 - 59,506,674EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000017307 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018682 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_CA14 UniProtKB/TrEMBL
NCBI Gene CA14 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF84 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt E2R6B8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38609 ENTREZGENE