ARID1A (AT-rich interaction domain 1A) - Rat Genome Database

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Gene: ARID1A (AT-rich interaction domain 1A) Canis lupus familiaris
Analyze
Symbol: ARID1A
Name: AT-rich interaction domain 1A
RGD ID: 12226341
Description: ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); nucleosome binding (ortholog); INVOLVED IN cardiac chamber development (ortholog); cardiac muscle cell differentiation (ortholog); chromatin organization (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; pancreatic cancer pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH Acute Hepatitis (ortholog); adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); FOUND IN npBAF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,331,606 - 73,401,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,324,852 - 73,401,102 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,909,026 - 69,978,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,894,794 - 73,964,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,719,680 - 70,789,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,725,226 - 71,794,735 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,728,646 - 72,798,165 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Hepatitis  (ISO)
adenocarcinoma  (ISO)
adenoid cystic carcinoma  (ISO)
autism spectrum disorder  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
Burkitt lymphoma  (ISO)
cerebellar hypoplasia  (ISO)
cholangiocarcinoma  (ISO)
Coffin-Siris syndrome  (ISO)
Coffin-Siris syndrome 1  (ISO)
Coffin-Siris syndrome 2  (ISO)
colon adenocarcinoma  (ISO)
colon cancer  (ISO)
colorectal cancer  (ISO)
colorectal carcinoma  (ISO)
Colorectal Neoplasms  (ISO)
embryonal rhabdomyosarcoma  (ISO)
endometrial adenocarcinoma  (ISO)
endometrial cancer  (ISO)
endometrial carcinoma  (ISO)
Endometrial Neoplasms  (ISO)
epilepsy  (ISO)
esophagus adenocarcinoma  (ISO)
Experimental Liver Neoplasms  (ISO)
gastric adenocarcinoma  (ISO)
genetic disease  (ISO)
hepatoblastoma  (ISO)
hepatocellular carcinoma  (ISO)
Hydrops Fetalis  (ISO)
intellectual disability  (ISO)
intrahepatic cholangiocarcinoma  (ISO)
Klatskin's tumor  (ISO)
lung non-small cell carcinoma  (ISO)
lung squamous cell carcinoma  (ISO)
Marfanoid Mental Retardation Syndrome, Autosomal  (ISO)
medulloblastoma  (ISO)
microcephaly  (ISO)
Microsatellite Instability  (ISO)
nasopharynx carcinoma  (ISO)
Neoplasm Metastasis  (ISO)
nephroblastoma  (ISO)
neuroblastoma  (ISO)
Neurodevelopmental Disorders  (ISO)
non-functioning pancreatic endocrine tumor  (ISO)
ovarian clear cell carcinoma  (ISO)
ovary serous adenocarcinoma  (ISO)
periventricular leukomalacia  (ISO)
pre-eclampsia  (ISO)
primary cutaneous T-cell non-Hodgkin lymphoma  (ISO)
Prostatic Neoplasms  (ISO)
retinitis pigmentosa 59  (ISO)
septooptic dysplasia  (ISO)
Sezary's disease  (ISO)
small intestine carcinoma  (ISO)
stomach cancer  (ISO)
stomach carcinoma  (ISO)
Stomach Neoplasms  (ISO)
T-cell non-Hodgkin lymphoma  (ISO)
transitional cell carcinoma  (ISO)
urinary bladder cancer  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARID1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,331,606 - 73,401,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,324,852 - 73,401,102 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,909,026 - 69,978,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,894,794 - 73,964,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,719,680 - 70,789,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,725,226 - 71,794,735 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,728,646 - 72,798,165 (-)NCBIUU_Cfam_GSD_1.0
ARID1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,696,015 - 26,782,104 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,693,236 - 26,782,104 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,022,506 - 27,108,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,895,109 - 26,981,188 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,706,666 - 26,792,737NCBI
Celera125,419,777 - 25,505,606 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,309,350 - 25,361,809 (+)NCBIHuRef
CHM1_1127,135,825 - 27,221,852 (+)NCBICHM1_1
T2T-CHM13v2.0126,533,960 - 26,620,059 (+)NCBIT2T-CHM13v2.0
Arid1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,406,319 - 133,484,682 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,406,319 - 133,484,080 (-)EnsemblGRCm39 Ensembl
GRCm384133,679,008 - 133,756,769 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,679,008 - 133,756,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,234,923 - 133,309,526 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,951,084 - 133,029,633 (-)NCBIMGSCv36mm8
Celera4131,854,780 - 131,931,113 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.25NCBI
Arid1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,192,014 - 151,269,291 (-)NCBIGRCr8
mRatBN7.25145,908,173 - 145,981,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,908,181 - 145,985,564 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5148,610,576 - 148,683,764 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,380,181 - 150,453,373 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,366,738 - 150,439,933 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,904,687 - 151,977,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,904,684 - 151,977,636 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,592,617 - 155,665,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,355,617 - 151,398,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15151,335,330 - 151,408,688 (+)NCBI
Celera5144,329,185 - 144,372,216 (-)NCBICelera
Cytogenetic Map5q36NCBI
Arid1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,068,631 - 6,120,759 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,068,631 - 6,120,759 (+)NCBIChiLan1.0ChiLan1.0
ARID1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,085,631 - 200,171,818 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,189,927 - 199,276,131 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,960,868 - 26,047,057 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,019,596 - 27,103,239 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,018,616 - 27,103,239 (+)Ensemblpanpan1.1panPan2
Arid1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,325,365 - 45,372,530 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647411,148,857 - 11,197,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,049,087 - 84,123,349 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,049,729 - 84,124,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2677,607,507 - 77,623,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARID1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,981,549 - 106,066,093 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,981,290 - 106,065,672 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603310,365,063 - 10,448,898 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,672,735 - 10,759,634 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,672,673 - 10,759,634 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARID1A
393 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 6 6 12 8 10 6
Low 1 5 6 6 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_847453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000019631   ⟹   ENSCAFP00000018208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,332,959 - 73,401,102 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000044234   ⟹   ENSCAFP00000036518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,324,852 - 73,401,102 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068973   ⟹   ENSCAFP00000061755
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,332,959 - 73,401,102 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080683   ⟹   ENSCAFP00000066019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,332,959 - 73,401,102 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084179   ⟹   ENSCAFP00000050180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,332,959 - 73,401,102 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020655   ⟹   ENSCAFP00845016201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020749   ⟹   ENSCAFP00845016276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020809   ⟹   ENSCAFP00845016331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020862   ⟹   ENSCAFP00845016382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,895,984 - 73,965,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020940   ⟹   ENSCAFP00845016450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,895,984 - 73,961,280 (-)Ensembl
RefSeq Acc Id: XM_005617742   ⟹   XP_005617799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,331,606 - 73,401,151 (-)NCBI
Dog10K_Boxer_Tasha269,909,026 - 69,978,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617743   ⟹   XP_005617800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,331,606 - 73,401,151 (-)NCBI
Dog10K_Boxer_Tasha269,909,026 - 69,978,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617744   ⟹   XP_005617801
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,332,959 - 73,401,151 (-)NCBI
Dog10K_Boxer_Tasha269,910,378 - 69,978,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617745   ⟹   XP_005617802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,331,606 - 73,378,331 (-)NCBI
Dog10K_Boxer_Tasha269,909,026 - 69,955,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038470600   ⟹   XP_038326528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,719,680 - 70,789,191 (-)NCBI
RefSeq Acc Id: XM_038470601   ⟹   XP_038326529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,721,031 - 70,789,176 (-)NCBI
RefSeq Acc Id: XM_038470602   ⟹   XP_038326530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,719,680 - 70,789,191 (-)NCBI
RefSeq Acc Id: XM_038470603   ⟹   XP_038326531
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,721,031 - 70,789,191 (-)NCBI
RefSeq Acc Id: XM_038470604   ⟹   XP_038326532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,719,680 - 70,766,406 (-)NCBI
RefSeq Acc Id: XM_038531443   ⟹   XP_038387371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,728,646 - 72,798,165 (-)NCBI
RefSeq Acc Id: XM_038531445   ⟹   XP_038387373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,729,998 - 72,798,150 (-)NCBI
RefSeq Acc Id: XM_038531446   ⟹   XP_038387374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,728,646 - 72,798,165 (-)NCBI
RefSeq Acc Id: XM_038531447   ⟹   XP_038387375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,729,998 - 72,798,165 (-)NCBI
RefSeq Acc Id: XM_038531448   ⟹   XP_038387376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,728,646 - 72,775,377 (-)NCBI
RefSeq Acc Id: XM_038595667   ⟹   XP_038451595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,725,226 - 71,794,735 (-)NCBI
RefSeq Acc Id: XM_038659746   ⟹   XP_038515674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,894,794 - 73,964,327 (-)NCBI
RefSeq Acc Id: XM_038659747   ⟹   XP_038515675
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,896,147 - 73,964,312 (-)NCBI
RefSeq Acc Id: XM_038659748   ⟹   XP_038515676
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,894,794 - 73,964,327 (-)NCBI
RefSeq Acc Id: XM_038659749   ⟹   XP_038515677
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,896,147 - 73,964,327 (-)NCBI
RefSeq Acc Id: XM_038659751   ⟹   XP_038515679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,894,794 - 73,941,537 (-)NCBI
RefSeq Acc Id: XM_847453   ⟹   XP_852546
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,332,959 - 73,401,102 (-)NCBI
Dog10K_Boxer_Tasha269,910,378 - 69,978,527 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005617799 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617800 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617801 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617802 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326528 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326529 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326530 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326531 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326532 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515674 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515675 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515676 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515677 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515679 (Get FASTA)   NCBI Sequence Viewer  
  XP_852546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000018208.6
  ENSCAFP00000036518.3
  ENSCAFP00000050180.2
  ENSCAFP00000061755.2
  ENSCAFP00000066019.2
  ENSCAFP00030021931.1
  ENSCAFP00040006176.1
  ENSCAFP00040006215.1
  ENSCAFP00040006243.1
  ENSCAFP00845016201
  ENSCAFP00845016201.1
  ENSCAFP00845016276
  ENSCAFP00845016276.1
  ENSCAFP00845016331.1
  ENSCAFP00845016382.1
  ENSCAFP00845016450
  ENSCAFP00845016450.1
RefSeq Acc Id: XP_852546   ⟸   XM_847453
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NAB2 (UniProtKB/TrEMBL),   A0A8I3NLJ7 (UniProtKB/TrEMBL),   A0A8C0RXD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617800   ⟸   XM_005617743
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617799   ⟸   XM_005617742
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617801   ⟸   XM_005617744
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617802   ⟸   XM_005617745
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NEQ4 (UniProtKB/TrEMBL),   A0A8P0SRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000061755   ⟸   ENSCAFT00000068973
RefSeq Acc Id: ENSCAFP00000050180   ⟸   ENSCAFT00000084179
RefSeq Acc Id: ENSCAFP00000036518   ⟸   ENSCAFT00000044234
RefSeq Acc Id: ENSCAFP00000018208   ⟸   ENSCAFT00000019631
RefSeq Acc Id: ENSCAFP00000066019   ⟸   ENSCAFT00000080683
RefSeq Acc Id: XP_038326530   ⟸   XM_038470602
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326528   ⟸   XM_038470600
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326532   ⟸   XM_038470604
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038326531   ⟸   XM_038470603
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038326529   ⟸   XM_038470601
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038451595   ⟸   XM_038595667
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038515676   ⟸   XM_038659748
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515674   ⟸   XM_038659746
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515679   ⟸   XM_038659751
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NEQ4 (UniProtKB/TrEMBL),   A0A8P0SRV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515677   ⟸   XM_038659749
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515675   ⟸   XM_038659747
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NAB2 (UniProtKB/TrEMBL),   A0A8I3NLJ7 (UniProtKB/TrEMBL),   A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387374   ⟸   XM_038531446
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387371   ⟸   XM_038531443
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387376   ⟸   XM_038531448
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NEQ4 (UniProtKB/TrEMBL),   A0A8P0SRV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387375   ⟸   XM_038531447
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RXD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387373   ⟸   XM_038531445
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NAB2 (UniProtKB/TrEMBL),   A0A8C0RXD1 (UniProtKB/TrEMBL),   A0A8I3NLJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845016382   ⟸   ENSCAFT00845020862
RefSeq Acc Id: ENSCAFP00845016450   ⟸   ENSCAFT00845020940
RefSeq Acc Id: ENSCAFP00845016331   ⟸   ENSCAFT00845020809
RefSeq Acc Id: ENSCAFP00845016276   ⟸   ENSCAFT00845020749
RefSeq Acc Id: ENSCAFP00845016201   ⟸   ENSCAFT00845020655
Protein Domains
ARID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012314 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013181 UniProtKB/TrEMBL
  ENSCAFG00040003652 UniProtKB/TrEMBL
  ENSCAFG00845011619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019631.6 UniProtKB/TrEMBL
  ENSCAFT00000044234.4 UniProtKB/TrEMBL
  ENSCAFT00000068973.2 UniProtKB/TrEMBL
  ENSCAFT00000080683.2 UniProtKB/TrEMBL
  ENSCAFT00000084179.2 UniProtKB/TrEMBL
  ENSCAFT00030025117.1 UniProtKB/TrEMBL
  ENSCAFT00040007105.1 UniProtKB/TrEMBL
  ENSCAFT00040007146.1 UniProtKB/TrEMBL
  ENSCAFT00040007177.1 UniProtKB/TrEMBL
  ENSCAFT00845020655 ENTREZGENE
  ENSCAFT00845020655.1 UniProtKB/TrEMBL
  ENSCAFT00845020749 ENTREZGENE
  ENSCAFT00845020749.1 UniProtKB/TrEMBL
  ENSCAFT00845020809.1 UniProtKB/TrEMBL
  ENSCAFT00845020862.1 UniProtKB/TrEMBL
  ENSCAFT00845020940 ENTREZGENE
  ENSCAFT00845020940.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BAF250/Osa UniProtKB/TrEMBL
  BAF250_C UniProtKB/TrEMBL
  BAF250a UniProtKB/TrEMBL
NCBI Gene ARID1A ENTREZGENE
PANTHER PTHR12656 UniProtKB/TrEMBL
  PTHR12656:SF12 UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  BAF250_C UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0NAB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PZ65_CANLF UniProtKB/TrEMBL
  A0A8C0Q475_CANLF UniProtKB/TrEMBL
  A0A8C0RXD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NEQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJV4_CANLF UniProtKB/TrEMBL
  A0A8I3NLJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVN1_CANLF UniProtKB/TrEMBL
  A0A8I3RYP9_CANLF UniProtKB/TrEMBL
  A0A8P0SRV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TDI1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38093 ENTREZGENE