ZEB1 (zinc finger E-box binding homeobox 1) - Rat Genome Database

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Gene: ZEB1 (zinc finger E-box binding homeobox 1) Canis lupus familiaris
Analyze
Symbol: ZEB1
Name: zinc finger E-box binding homeobox 1
RGD ID: 12221775
Description: ENCODES a protein that exhibits chromatin binding (ortholog); double-stranded DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN animal organ development (ortholog); cartilage development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); Breast Neoplasms (ortholog); corneal dystrophy (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger E-box-binding homeobox 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,300,401 - 15,481,535 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,299,723 - 15,481,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha212,788,320 - 12,969,363 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0213,536,487 - 13,717,784 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl213,501,815 - 13,717,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1212,976,357 - 13,157,263 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0212,866,906 - 13,048,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0213,140,991 - 13,322,104 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ development  (IEA,ISO)
cartilage development  (IEA,ISO)
cell population proliferation  (IEA,ISO)
cellular response to amino acid stimulus  (IEA,ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
central nervous system development  (IBA,IEA,ISO)
cochlea morphogenesis  (IEA,ISO)
embryonic camera-type eye morphogenesis  (IEA,ISO)
embryonic morphogenesis  (IEA,ISO)
embryonic skeletal system morphogenesis  (IEA,ISO)
epithelial cell proliferation  (IEA,ISO)
forebrain development  (ISO)
keratinocyte proliferation  (IEA,ISO)
negative regulation of DNA-templated transcription  (IEA)
negative regulation of endothelial cell differentiation  (IEA)
negative regulation of epithelial cell differentiation  (IEA,ISO)
negative regulation of epithelial cell proliferation  (IEA,ISO)
negative regulation of keratinocyte proliferation  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
pattern specification process  (IEA,ISO)
positive regulation of neuron differentiation  (IEA)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
regulation of mesenchymal cell proliferation  (IEA,ISO)
regulation of smooth muscle cell differentiation  (IEA,ISO)
regulation of T cell differentiation in thymus  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transforming growth factor beta receptor signaling pathway  (IEA,ISO)
response to activity  (ISO)
response to nutrient levels  (ISO)
semicircular canal morphogenesis  (IEA,ISO)

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:25447746   PMID:30032202   PMID:32278962  


Genomics

Comparative Map Data
ZEB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,300,401 - 15,481,535 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,299,723 - 15,481,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha212,788,320 - 12,969,363 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0213,536,487 - 13,717,784 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl213,501,815 - 13,717,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1212,976,357 - 13,157,263 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0212,866,906 - 13,048,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0213,140,991 - 13,322,104 (-)NCBIUU_Cfam_GSD_1.0
ZEB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381031,318,417 - 31,529,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1031,318,495 - 31,529,814 (+)EnsemblGRCh38hg38GRCh38
GRCh371031,607,346 - 31,818,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361031,648,148 - 31,856,742 (+)NCBINCBI36Build 36hg18NCBI36
Build 341031,648,147 - 31,856,740NCBI
Celera1031,373,372 - 31,583,958 (+)NCBICelera
Cytogenetic Map10p11.22NCBI
HuRef1031,330,231 - 31,538,974 (+)NCBIHuRef
CHM1_11031,608,067 - 31,818,701 (+)NCBICHM1_1
T2T-CHM13v2.01031,348,155 - 31,559,554 (+)NCBIT2T-CHM13v2.0
Zeb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,591,330 - 5,775,468 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm39 Ensembl
GRCm38185,591,327 - 5,775,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv37185,591,889 - 5,774,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36185,591,889 - 5,774,909 (+)NCBIMGSCv36mm8
Celera185,749,281 - 5,819,757 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.42NCBI
Zeb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81756,644,397 - 56,811,155 (-)NCBIGRCr8
mRatBN7.21751,948,948 - 52,116,018 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,948,948 - 52,115,214 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1755,134,749 - 55,300,937 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01759,137,668 - 59,303,854 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01753,287,135 - 53,453,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01754,656,627 - 54,714,920 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1754,658,463 - 54,714,914 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01752,353,064 - 52,373,420 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41760,177,150 - 60,198,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11760,187,896 - 60,245,300 (-)NCBI
Celera1747,960,914 - 48,019,394 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Zeb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542923,010,790 - 23,198,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542923,011,627 - 23,198,188 (+)NCBIChiLan1.0ChiLan1.0
ZEB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2843,969,716 - 44,179,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11043,974,837 - 44,184,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01031,449,202 - 31,659,534 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11032,043,863 - 32,253,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1032,046,491 - 32,253,550 (+)Ensemblpanpan1.1panPan2
Zeb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934410,517,823 - 10,676,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493657417,684 - 178,293 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493657417,643 - 175,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZEB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1042,013,084 - 42,214,205 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11042,013,114 - 42,216,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21046,547,219 - 46,726,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZEB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1930,674,893 - 30,862,682 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl930,674,578 - 30,863,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605639,637,685 - 39,830,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zeb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248053,964,450 - 4,042,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248053,964,448 - 4,044,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZEB1
1387 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003638879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000006445   ⟹   ENSCAFP00000005968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,299,723 - 15,481,495 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000006447   ⟹   ENSCAFP00000005970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,302,164 - 15,481,495 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000065928   ⟹   ENSCAFP00000063640
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,302,164 - 15,437,525 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000066606   ⟹   ENSCAFP00000043378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,302,164 - 15,481,495 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000068464   ⟹   ENSCAFP00000045903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,302,164 - 15,479,280 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000072100   ⟹   ENSCAFP00000057420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl215,302,164 - 15,481,483 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018298   ⟹   ENSCAFP00845014278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl213,501,815 - 13,717,743 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018394   ⟹   ENSCAFP00845014360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl213,538,287 - 13,715,764 (-)Ensembl
RefSeq Acc Id: XM_003638879   ⟹   XP_003638927
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1215,300,401 - 15,481,535 (-)NCBI
Dog10K_Boxer_Tasha212,788,320 - 12,969,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617037   ⟹   XP_005617094
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1215,300,401 - 15,481,535 (-)NCBI
Dog10K_Boxer_Tasha212,788,320 - 12,969,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617038   ⟹   XP_005617095
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1215,300,401 - 15,481,531 (-)NCBI
Dog10K_Boxer_Tasha212,788,320 - 12,969,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005617039   ⟹   XP_005617096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1215,300,401 - 15,481,519 (-)NCBI
Dog10K_Boxer_Tasha212,788,320 - 12,969,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038456406   ⟹   XP_038312334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha212,788,320 - 12,968,060 (-)NCBI
RefSeq Acc Id: XM_038469180   ⟹   XP_038325108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1212,976,357 - 13,157,262 (-)NCBI
RefSeq Acc Id: XM_038469181   ⟹   XP_038325109
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1212,976,357 - 13,157,262 (-)NCBI
RefSeq Acc Id: XM_038469182   ⟹   XP_038325110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1212,976,357 - 13,157,261 (-)NCBI
RefSeq Acc Id: XM_038469183   ⟹   XP_038325111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1212,976,357 - 13,155,960 (-)NCBI
RefSeq Acc Id: XM_038469184   ⟹   XP_038325112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1212,976,357 - 13,157,263 (-)NCBI
RefSeq Acc Id: XM_038529889   ⟹   XP_038385817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0213,140,991 - 13,322,103 (-)NCBI
RefSeq Acc Id: XM_038529890   ⟹   XP_038385818
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0213,140,991 - 13,322,103 (-)NCBI
RefSeq Acc Id: XM_038529891   ⟹   XP_038385819
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0213,140,991 - 13,322,102 (-)NCBI
RefSeq Acc Id: XM_038529892   ⟹   XP_038385820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0213,140,991 - 13,320,806 (-)NCBI
RefSeq Acc Id: XM_038529893   ⟹   XP_038385821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0213,140,991 - 13,322,104 (-)NCBI
RefSeq Acc Id: XM_038594143   ⟹   XP_038450071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0212,866,906 - 13,048,213 (-)NCBI
RefSeq Acc Id: XM_038594144   ⟹   XP_038450072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0212,866,906 - 13,048,213 (-)NCBI
RefSeq Acc Id: XM_038594145   ⟹   XP_038450073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0212,866,906 - 13,048,212 (-)NCBI
RefSeq Acc Id: XM_038594146   ⟹   XP_038450074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0212,866,906 - 13,046,916 (-)NCBI
RefSeq Acc Id: XM_038594147   ⟹   XP_038450075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0212,866,906 - 13,048,214 (-)NCBI
RefSeq Acc Id: XM_038658212   ⟹   XP_038514140
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0213,536,487 - 13,717,783 (-)NCBI
RefSeq Acc Id: XM_038658213   ⟹   XP_038514141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0213,536,487 - 13,717,783 (-)NCBI
RefSeq Acc Id: XM_038658214   ⟹   XP_038514142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0213,536,487 - 13,717,782 (-)NCBI
RefSeq Acc Id: XM_038658215   ⟹   XP_038514143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0213,536,487 - 13,716,481 (-)NCBI
RefSeq Acc Id: XM_038658216   ⟹   XP_038514144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0213,536,487 - 13,717,784 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003638927 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617094 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617095 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038312334 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325110 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385817 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385819 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385820 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450072 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450073 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450075 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514142 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514143 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514144 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000045903.1
  ENSCAFP00000063640.1
  ENSCAFP00030034434.1
  ENSCAFP00030034660.1
  ENSCAFP00040000690.1
  ENSCAFP00845014278
  ENSCAFP00845014278.1
  ENSCAFP00845014360
  ENSCAFP00845014360.1
RefSeq Acc Id: XP_005617094   ⟸   XM_005617037
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003638927   ⟸   XM_003638879
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617095   ⟸   XM_005617038
- Peptide Label: isoform X3
- UniProtKB: A0A8P0TF51 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617096   ⟸   XM_005617039
- Peptide Label: isoform X3
- UniProtKB: A0A8P0TF51 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000005970   ⟸   ENSCAFT00000006447
Ensembl Acc Id: ENSCAFP00000005968   ⟸   ENSCAFT00000006445
Ensembl Acc Id: ENSCAFP00000045903   ⟸   ENSCAFT00000068464
Ensembl Acc Id: ENSCAFP00000043378   ⟸   ENSCAFT00000066606
Ensembl Acc Id: ENSCAFP00000057420   ⟸   ENSCAFT00000072100
Ensembl Acc Id: ENSCAFP00000063640   ⟸   ENSCAFT00000065928
RefSeq Acc Id: XP_038325112   ⟸   XM_038469184
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038325109   ⟸   XM_038469181
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325108   ⟸   XM_038469180
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038325110   ⟸   XM_038469182
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038325111   ⟸   XM_038469183
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038450075   ⟸   XM_038594147
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038450072   ⟸   XM_038594144
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450071   ⟸   XM_038594143
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450073   ⟸   XM_038594145
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038450074   ⟸   XM_038594146
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038514144   ⟸   XM_038658216
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N9Y7 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514141   ⟸   XM_038658213
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514140   ⟸   XM_038658212
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514142   ⟸   XM_038658214
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N9Y7 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514143   ⟸   XM_038658215
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N9Y7 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038312334   ⟸   XM_038456406
- Peptide Label: isoform X3
- UniProtKB: A0A8P0TF51 (UniProtKB/TrEMBL),   A0A8C0P8G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385821   ⟸   XM_038529893
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P8G2 (UniProtKB/TrEMBL),   A0A8P0TF51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385818   ⟸   XM_038529890
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385817   ⟸   XM_038529889
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P189 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385819   ⟸   XM_038529891
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P8G2 (UniProtKB/TrEMBL),   A0A8P0TF51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385820   ⟸   XM_038529892
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P8G2 (UniProtKB/TrEMBL),   A0A8P0TF51 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845014360   ⟸   ENSCAFT00845018394
Ensembl Acc Id: ENSCAFP00845014278   ⟸   ENSCAFT00845018298
Protein Domains
C2H2-type

Promoters
RGD ID:13682392
Promoter ID:EPDNEW_C460
Type:multiple initiation site
Name:ZEB1_1
Description:zinc finger E-box binding homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1215,481,502 - 15,481,562EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004023 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021479 UniProtKB/TrEMBL
  ENSCAFG00040000412 UniProtKB/TrEMBL
  ENSCAFG00845010369 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000065928.2 UniProtKB/TrEMBL
  ENSCAFT00000068464.2 UniProtKB/TrEMBL
  ENSCAFT00030039463.1 UniProtKB/TrEMBL
  ENSCAFT00030039718.1 UniProtKB/TrEMBL
  ENSCAFT00040000814.1 UniProtKB/TrEMBL
  ENSCAFT00845018298 ENTREZGENE
  ENSCAFT00845018298.1 UniProtKB/TrEMBL
  ENSCAFT00845018394 ENTREZGENE
  ENSCAFT00845018394.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Di19_Zn-bd UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  ZnF_E-box_Homeobox UniProtKB/TrEMBL
NCBI Gene ZEB1 ENTREZGENE
PANTHER HISTONE H4 TRANSCRIPTION FACTOR-RELATED UniProtKB/TrEMBL
  ZINC FINGER E-BOX-BINDING HOMEOBOX 1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-Di19 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0P189 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P8G2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PQE8_CANLF UniProtKB/TrEMBL
  A0A8I3N9Y7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NG11_CANLF UniProtKB/TrEMBL
  A0A8P0TF51 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0SYZ4 UniProtKB/TrEMBL
VGNC ID VGNC:48596 ENTREZGENE