SDHD (succinate dehydrogenase complex subunit D) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SDHD (succinate dehydrogenase complex subunit D) Canis lupus familiaris
Analyze
Symbol: SDHD
Name: succinate dehydrogenase complex subunit D
RGD ID: 12220852
Description: ENCODES a protein that exhibits heme binding (ortholog); succinate dehydrogenase (ubiquinone) activity (ortholog); ubiquinone binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); regulation of catecholamine secretion (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN altered citric acid cycle pathway; citric acid cycle pathway; electron transport chain pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); Carney-Stratakis syndrome (ortholog); Carotid Body Tumor (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial; succinate dehydrogenase complex, subunit D, integral membrane protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,030,295 - 21,041,125 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha520,952,816 - 20,963,688 (-)NCBI
ROS_Cfam_1.0521,053,488 - 21,064,559 (-)NCBI
UMICH_Zoey_3.1521,115,095 - 21,126,173 (-)NCBI
UNSW_CanFamBas_1.0521,015,331 - 21,026,183 (-)NCBI
UU_Cfam_GSD_1.0521,063,761 - 21,074,834 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24813157  


Genomics

Comparative Map Data
SDHD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,030,295 - 21,041,125 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha520,952,816 - 20,963,688 (-)NCBI
ROS_Cfam_1.0521,053,488 - 21,064,559 (-)NCBI
UMICH_Zoey_3.1521,115,095 - 21,126,173 (-)NCBI
UNSW_CanFamBas_1.0521,015,331 - 21,026,183 (-)NCBI
UU_Cfam_GSD_1.0521,063,761 - 21,074,834 (-)NCBI
SDHD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11112,086,824 - 112,120,016 (+)EnsemblGRCh38hg38GRCh38
GRCh3811112,086,873 - 112,095,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711111,957,597 - 111,966,518 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,462,832 - 111,471,727 (+)NCBINCBI36hg18NCBI36
Build 3411111,462,831 - 111,471,727NCBI
Celera11109,110,763 - 109,119,710 (+)NCBI
Cytogenetic Map11q23.1NCBI
HuRef11107,881,580 - 107,890,557 (+)NCBIHuRef
CHM1_111111,840,726 - 111,849,704 (+)NCBICHM1_1
Sdhd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,507,640 - 50,515,149 (-)NCBIGRCm39mm39
GRCm39 Ensembl950,507,657 - 50,515,112 (-)Ensembl
GRCm38950,596,340 - 50,603,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,596,357 - 50,603,812 (-)EnsemblGRCm38mm10GRCm38
MGSCv37950,404,445 - 50,411,954 (-)NCBIGRCm37mm9NCBIm37
MGSCv36950,348,576 - 50,356,047 (-)NCBImm8
Celera947,891,569 - 47,899,078 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
Sdhd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2850,944,717 - 50,954,298 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl855,028,125 - 55,037,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0855,028,125 - 55,037,604 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0853,625,447 - 53,634,926 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4853,955,067 - 53,964,547 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1853,974,120 - 53,983,601 (-)NCBI
Celera850,493,184 - 50,502,624 (-)NCBICelera
Cytogenetic Map8q23NCBI
Sdhd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541213,768,501 - 13,778,944 (+)NCBIChiLan1.0ChiLan1.0
SDHD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111110,817,016 - 110,825,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,817,016 - 110,896,829 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011106,973,256 - 106,982,237 (+)NCBIMhudiblu_PPA_v0panPan3
Sdhd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,336,365 - 94,348,330 (+)NCBI
SpeTri2.0NW_0049366122,357,336 - 2,369,204 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDHD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,790,561 - 39,803,946 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,790,654 - 39,803,602 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,632,268 - 44,645,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDHD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,443,666 - 103,452,681 (+)NCBI
Vero_WHO_p1.0NW_02366604322,530,988 - 22,540,558 (-)NCBI
Sdhd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247847,241,770 - 7,252,016 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005619768   ⟹   XP_005619825
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1521,030,295 - 21,041,125 (-)NCBI
Dog10K_Boxer_Tasha520,952,816 - 20,963,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038475033   ⟹   XP_038330961
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1521,115,107 - 21,126,173 (-)NCBI
RefSeq Acc Id: XM_038475034   ⟹   XP_038330962
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1521,115,095 - 21,126,173 (-)NCBI
RefSeq Acc Id: XM_038536168   ⟹   XP_038392096
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0521,063,773 - 21,074,834 (-)NCBI
RefSeq Acc Id: XM_038536169   ⟹   XP_038392097
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0521,063,761 - 21,074,834 (-)NCBI
RefSeq Acc Id: XM_038600362   ⟹   XP_038456290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0521,015,343 - 21,026,183 (-)NCBI
RefSeq Acc Id: XM_038600363   ⟹   XP_038456291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0521,015,331 - 21,026,183 (-)NCBI
RefSeq Acc Id: XM_038664886   ⟹   XP_038520814
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0521,053,500 - 21,064,559 (-)NCBI
RefSeq Acc Id: XM_038664887   ⟹   XP_038520815
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0521,053,488 - 21,064,559 (-)NCBI
RefSeq Acc Id: XM_536573   ⟹   XP_536573
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1521,030,295 - 21,041,125 (-)NCBI
Dog10K_Boxer_Tasha520,952,828 - 20,963,688 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005619825   ⟸   XM_005619768
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_536573   ⟸   XM_536573
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038330962   ⟸   XM_038475034
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038330961   ⟸   XM_038475033
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038456291   ⟸   XM_038600363
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038456290   ⟸   XM_038600362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038520815   ⟸   XM_038664887
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038520814   ⟸   XM_038664886
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038392097   ⟸   XM_038536169
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038392096   ⟸   XM_038536168
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000047557 ENTREZGENE
Ensembl Protein ENSCAFP00000047850 ENTREZGENE
  ENSCAFP00000049396 ENTREZGENE
NCBI Gene SDHD ENTREZGENE