TBC1D30 (TBC1 domain family member 30) - Rat Genome Database

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Gene: TBC1D30 (TBC1 domain family member 30) Canis lupus familiaris
Analyze
Symbol: TBC1D30
Name: TBC1 domain family member 30
RGD ID: 12220197
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); small GTPase binding (inferred); INVOLVED IN negative regulation of cilium assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN ciliary basal body (inferred); cilium (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,435,353 - 7,514,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,430,381 - 7,512,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,370,949 - 7,450,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,546,022 - 7,625,360 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,539,959 - 7,625,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,411,038 - 7,490,082 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,663,625 - 7,742,741 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,794,211 - 7,873,289 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TBC1D30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1107,435,353 - 7,514,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl107,430,381 - 7,512,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha107,370,949 - 7,450,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0107,546,022 - 7,625,360 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl107,539,959 - 7,625,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1107,411,038 - 7,490,082 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0107,663,625 - 7,742,741 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0107,794,211 - 7,873,289 (+)NCBIUU_Cfam_GSD_1.0
TBC1D30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,759,484 - 64,881,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,759,484 - 64,881,033 (+)EnsemblGRCh38hg38GRCh38
GRCh371265,153,264 - 65,274,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361263,460,856 - 63,561,079 (+)NCBINCBI36Build 36hg18NCBI36
Celera1264,839,404 - 64,937,879 (+)NCBICelera
Cytogenetic Map12q14.3NCBI
HuRef1262,269,165 - 62,325,612 (+)NCBIHuRef
CHM1_11265,185,470 - 65,241,929 (+)NCBICHM1_1
T2T-CHM13v2.01264,738,311 - 64,860,047 (+)NCBIT2T-CHM13v2.0
Tbc1d30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,099,724 - 121,187,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,099,725 - 121,187,183 (-)EnsemblGRCm39 Ensembl
GRCm3810121,263,819 - 121,351,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10121,263,820 - 121,351,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710120,700,875 - 120,748,245 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610120,666,479 - 120,718,932 (-)NCBIMGSCv36mm8
Celera10123,627,218 - 123,683,449 (-)NCBICelera
Cytogenetic Map10D2NCBI
Tbc1d30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8758,665,054 - 58,754,427 (-)NCBIGRCr8
mRatBN7.2756,779,570 - 56,869,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl756,782,165 - 56,870,515 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0763,361,443 - 63,409,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl763,361,696 - 63,407,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0763,585,333 - 63,631,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4760,564,501 - 60,611,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1760,585,483 - 60,653,319 (-)NCBI
Celera753,527,915 - 53,576,165 (-)NCBICelera
Cytogenetic Map7q22NCBI
Tbc1d30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545811,530,920 - 11,617,765 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545811,531,066 - 11,617,765 (+)NCBIChiLan1.0ChiLan1.0
TBC1D30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21029,490,225 - 29,609,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11229,486,991 - 29,606,300 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01224,042,551 - 24,164,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,546,158 - 24,646,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,551,186 - 24,645,916 (-)Ensemblpanpan1.1panPan2
Tbc1d30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494550,992,374 - 51,079,423 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365453,074,561 - 3,117,918 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365453,075,135 - 3,117,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl529,248,091 - 29,298,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1529,206,134 - 29,298,401 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2532,235,370 - 32,291,607 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11160,456,397 - 60,564,293 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1160,516,158 - 60,564,477 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037185,208,104 - 185,319,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248023,531,961 - 3,579,864 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248023,533,703 - 3,623,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TBC1D30
818 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 10 1 12 4
Low 5 1 12 6 5 6 6 8 6 6
Below cutoff 4 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005625587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038549925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038613902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000000565   ⟹   ENSCAFP00000000514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl107,430,381 - 7,511,547 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000048434   ⟹   ENSCAFP00000041759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl107,473,922 - 7,511,547 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075959   ⟹   ENSCAFP00000053014
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl107,435,600 - 7,512,705 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845021229   ⟹   ENSCAFP00845016694
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl107,539,959 - 7,625,359 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845021279   ⟹   ENSCAFP00845016735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl107,539,959 - 7,623,343 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845021355   ⟹   ENSCAFP00845016792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl107,539,959 - 7,622,753 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845021420   ⟹   ENSCAFP00845016835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl107,584,776 - 7,625,359 (+)Ensembl
RefSeq Acc Id: XM_005625587   ⟹   XP_005625644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1107,435,355 - 7,514,411 (+)NCBI
Dog10K_Boxer_Tasha107,370,952 - 7,450,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014117210   ⟹   XP_013972685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1107,435,353 - 7,514,411 (+)NCBI
Dog10K_Boxer_Tasha107,370,949 - 7,450,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014117212   ⟹   XP_013972687
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1107,475,785 - 7,514,411 (+)NCBI
Dog10K_Boxer_Tasha107,411,292 - 7,450,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022424164   ⟹   XP_022279872
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1107,435,354 - 7,514,411 (+)NCBI
Dog10K_Boxer_Tasha107,370,950 - 7,450,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038488024   ⟹   XP_038343952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,411,038 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488025   ⟹   XP_038343953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,411,041 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488026   ⟹   XP_038343954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,411,038 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488027   ⟹   XP_038343955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,449,612 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488028   ⟹   XP_038343956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,411,039 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488029   ⟹   XP_038343957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,449,615 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488030   ⟹   XP_038343958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,449,613 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038488031   ⟹   XP_038343959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1107,451,402 - 7,490,082 (+)NCBI
RefSeq Acc Id: XM_038549918   ⟹   XP_038405846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,794,211 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549919   ⟹   XP_038405847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,794,214 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549920   ⟹   XP_038405848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,794,211 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549921   ⟹   XP_038405849
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,832,797 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549922   ⟹   XP_038405850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,794,212 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549923   ⟹   XP_038405851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,832,800 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549924   ⟹   XP_038405852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,832,798 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038549925   ⟹   XP_038405853
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0107,834,590 - 7,873,289 (+)NCBI
RefSeq Acc Id: XM_038613895   ⟹   XP_038469823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,663,625 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613896   ⟹   XP_038469824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,663,628 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613897   ⟹   XP_038469825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,663,625 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613898   ⟹   XP_038469826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,702,214 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613899   ⟹   XP_038469827
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,663,626 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613900   ⟹   XP_038469828
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,702,217 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613901   ⟹   XP_038469829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,702,215 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038613902   ⟹   XP_038469830
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0107,704,007 - 7,742,741 (+)NCBI
RefSeq Acc Id: XM_038640371   ⟹   XP_038496299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha107,370,949 - 7,450,012 (+)NCBI
RefSeq Acc Id: XM_038640374   ⟹   XP_038496302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha107,409,500 - 7,450,012 (+)NCBI
RefSeq Acc Id: XM_038640382   ⟹   XP_038496310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha107,409,503 - 7,450,012 (+)NCBI
RefSeq Acc Id: XM_038640389   ⟹   XP_038496317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha107,409,501 - 7,450,012 (+)NCBI
RefSeq Acc Id: XM_038679245   ⟹   XP_038535173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,546,022 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679247   ⟹   XP_038535175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,546,025 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679248   ⟹   XP_038535176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,546,022 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679249   ⟹   XP_038535177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,584,797 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679250   ⟹   XP_038535178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,546,023 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679251   ⟹   XP_038535179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,584,800 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679252   ⟹   XP_038535180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,584,798 - 7,625,360 (+)NCBI
RefSeq Acc Id: XM_038679253   ⟹   XP_038535181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0107,586,590 - 7,625,360 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005625644 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972685 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972687 (Get FASTA)   NCBI Sequence Viewer  
  XP_022279872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343956 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343958 (Get FASTA)   NCBI Sequence Viewer  
  XP_038343959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405849 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405851 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469824 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469825 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469826 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469827 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469828 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469829 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469830 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496299 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496302 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000000514.5
  ENSCAFP00000041759.3
  ENSCAFP00000053014.2
  ENSCAFP00000068818.1
  ENSCAFP00030019958.1
  ENSCAFP00030020025.1
  ENSCAFP00030020215.1
  ENSCAFP00040034406.1
  ENSCAFP00040034468.1
  ENSCAFP00845016694
  ENSCAFP00845016694.1
  ENSCAFP00845016735.1
  ENSCAFP00845016792
  ENSCAFP00845016792.1
  ENSCAFP00845016835
  ENSCAFP00845016835.1
Reference Protein Sequences
RefSeq Acc Id: XP_013972685   ⟸   XM_014117210
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005625644   ⟸   XM_005625587
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013972687   ⟸   XM_014117212
- Peptide Label: isoform X8
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022279872   ⟸   XM_022424164
- Peptide Label: isoform X5
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000000514   ⟸   ENSCAFT00000000565
RefSeq Acc Id: ENSCAFP00000041759   ⟸   ENSCAFT00000048434
RefSeq Acc Id: ENSCAFP00000053014   ⟸   ENSCAFT00000075959
RefSeq Acc Id: XP_038343952   ⟸   XM_038488024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038343954   ⟸   XM_038488026
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038343956   ⟸   XM_038488028
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038343953   ⟸   XM_038488025
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038343955   ⟸   XM_038488027
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038343958   ⟸   XM_038488030
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038343957   ⟸   XM_038488029
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038343959   ⟸   XM_038488031
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038469823   ⟸   XM_038613895
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038469825   ⟸   XM_038613897
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038469827   ⟸   XM_038613899
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038469824   ⟸   XM_038613896
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038469826   ⟸   XM_038613898
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038469829   ⟸   XM_038613901
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038469828   ⟸   XM_038613900
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038469830   ⟸   XM_038613902
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038535173   ⟸   XM_038679245
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535176   ⟸   XM_038679248
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535178   ⟸   XM_038679250
- Peptide Label: isoform X5
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535175   ⟸   XM_038679247
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535177   ⟸   XM_038679249
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L1X2 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535180   ⟸   XM_038679252
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535179   ⟸   XM_038679251
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L1X9 (UniProtKB/TrEMBL),   A0A8C0TD77 (UniProtKB/TrEMBL),   A0A8I3RWW1 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535181   ⟸   XM_038679253
- Peptide Label: isoform X8
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038496299   ⟸   XM_038640371
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038496302   ⟸   XM_038640374
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L1X2 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038496317   ⟸   XM_038640389
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038496310   ⟸   XM_038640382
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L1X9 (UniProtKB/TrEMBL),   A0A8C0TD77 (UniProtKB/TrEMBL),   A0A8I3RWW1 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405846   ⟸   XM_038549918
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405848   ⟸   XM_038549920
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405850   ⟸   XM_038549922
- Peptide Label: isoform X5
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405847   ⟸   XM_038549919
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405849   ⟸   XM_038549921
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L1X2 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405852   ⟸   XM_038549924
- Peptide Label: isoform X7
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405851   ⟸   XM_038549923
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L1X9 (UniProtKB/TrEMBL),   A0A8C0RIN9 (UniProtKB/TrEMBL),   A0A8C0TD77 (UniProtKB/TrEMBL),   A0A8I3RWW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405853   ⟸   XM_038549925
- Peptide Label: isoform X8
- UniProtKB: A0A8C0RIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845016792   ⟸   ENSCAFT00845021355
RefSeq Acc Id: ENSCAFP00845016835   ⟸   ENSCAFT00845021420
RefSeq Acc Id: ENSCAFP00845016694   ⟸   ENSCAFT00845021229
RefSeq Acc Id: ENSCAFP00845016735   ⟸   ENSCAFT00845021279
Protein Domains
Rab-GAP TBC

Promoters
RGD ID:13684897
Promoter ID:EPDNEW_C2965
Type:initiation region
Name:TBC1D30_1
Description:TBC1 domain family member 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1107,473,890 - 7,473,950EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000361 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012290 UniProtKB/TrEMBL
  ENSCAFG00040021241 UniProtKB/TrEMBL
  ENSCAFG00845011871 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000565.6 UniProtKB/TrEMBL
  ENSCAFT00000048434.3 UniProtKB/TrEMBL
  ENSCAFT00000075959.2 UniProtKB/TrEMBL
  ENSCAFT00000102903.1 UniProtKB/TrEMBL
  ENSCAFT00030022877.1 UniProtKB/TrEMBL
  ENSCAFT00030022954.1 UniProtKB/TrEMBL
  ENSCAFT00030023178.1 UniProtKB/TrEMBL
  ENSCAFT00040039430.1 UniProtKB/TrEMBL
  ENSCAFT00040039505.1 UniProtKB/TrEMBL
  ENSCAFT00845021229 ENTREZGENE
  ENSCAFT00845021229.1 UniProtKB/TrEMBL
  ENSCAFT00845021279.1 UniProtKB/TrEMBL
  ENSCAFT00845021355 ENTREZGENE
  ENSCAFT00845021355.1 UniProtKB/TrEMBL
  ENSCAFT00845021420 ENTREZGENE
  ENSCAFT00845021420.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  Tbc1d30_C UniProtKB/TrEMBL
NCBI Gene TBC1D30 ENTREZGENE
PANTHER TBC1 DOMAIN FAMILY MEMBER 30 UniProtKB/TrEMBL
  TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam DUF4682 UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A8C0L1X2 ENTREZGENE
  A0A8C0L1X9 ENTREZGENE
  A0A8C0N1H3_CANLF UniProtKB/TrEMBL
  A0A8C0N463_CANLF UniProtKB/TrEMBL
  A0A8C0RIN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TD34_CANLF UniProtKB/TrEMBL
  A0A8C0TD77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NF62_CANLF UniProtKB/TrEMBL
  A0A8I3NFD4_CANLF UniProtKB/TrEMBL
  A0A8I3NWC6_CANLF UniProtKB/TrEMBL
  A0A8I3RWW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P2N7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47146 ENTREZGENE