INPP5F (inositol polyphosphate-5-phosphatase F) - Rat Genome Database

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Gene: INPP5F (inositol polyphosphate-5-phosphatase F) Canis lupus familiaris
Analyze
Symbol: INPP5F
Name: inositol polyphosphate-5-phosphatase F
RGD ID: 12217646
Description: ENCODES a protein that exhibits inositol monophosphate 4-phosphatase activity (ortholog); phosphatidylinositol phosphate 4-phosphatase activity (ortholog); phosphatidylinositol phosphate 5-phosphatase activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); cardiac muscle hypertrophy in response to stress (ortholog); clathrin-dependent endocytosis (ortholog); FOUND IN axon (ortholog); clathrin-coated endocytic vesicle (ortholog); clathrin-coated pit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: phosphatidylinositide phosphatase SAC2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,878,489 - 29,945,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,858,658 - 29,944,490 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2830,000,260 - 30,087,467 (+)NCBI
ROS_Cfam_1.02830,389,637 - 30,477,263 (+)NCBI
UMICH_Zoey_3.12829,942,569 - 30,029,782 (+)NCBI
UNSW_CanFamBas_1.02829,965,152 - 30,052,567 (+)NCBI
UU_Cfam_GSD_1.02830,157,914 - 30,245,161 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
INPP5F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,878,489 - 29,945,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,858,658 - 29,944,490 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2830,000,260 - 30,087,467 (+)NCBI
ROS_Cfam_1.02830,389,637 - 30,477,263 (+)NCBI
UMICH_Zoey_3.12829,942,569 - 30,029,782 (+)NCBI
UNSW_CanFamBas_1.02829,965,152 - 30,052,567 (+)NCBI
UU_Cfam_GSD_1.02830,157,914 - 30,245,161 (+)NCBI
INPP5F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10119,726,042 - 119,829,147 (+)EnsemblGRCh38hg38GRCh38
GRCh3810119,704,395 - 119,830,482 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710121,485,562 - 121,588,659 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610121,475,599 - 121,578,649 (+)NCBINCBI36hg18NCBI36
Celera10115,216,680 - 115,319,730 (+)NCBI
Cytogenetic Map10q26.11NCBI
HuRef10115,115,057 - 115,217,590 (+)NCBIHuRef
CHM1_110121,770,489 - 121,873,582 (+)NCBICHM1_1
Inpp5f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397128,212,905 - 128,298,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl7128,213,052 - 128,298,149 (+)Ensembl
GRCm387128,611,181 - 128,696,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,611,328 - 128,696,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,754,879 - 135,839,950 (+)NCBIGRCm37mm9NCBIm37
MGSCv367128,402,513 - 128,487,584 (+)NCBImm8
Celera7128,446,401 - 128,535,180 (+)NCBICelera
Cytogenetic Map7F3NCBI
Inpp5f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,190,480 - 183,270,276 (+)NCBI
Rnor_6.0 Ensembl1200,037,749 - 200,116,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01200,037,749 - 200,116,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01207,085,305 - 207,164,063 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01207,391,055 - 207,416,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,868,447 - 187,948,236 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11188,017,881 - 188,097,016 (+)NCBI
Celera1180,836,730 - 180,916,413 (+)NCBICelera
Cytogenetic Map1q37NCBI
Inpp5f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955551570,304 - 640,243 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955551634,724 - 641,266 (+)NCBIChiLan1.0ChiLan1.0
INPP5F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110119,712,696 - 119,813,450 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10119,712,696 - 119,813,444 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010116,295,802 - 116,396,764 (+)NCBIMhudiblu_PPA_v0panPan3
Inpp5f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721316,376,764 - 16,438,128 (-)NCBI
SpeTri2.0NW_0049364869,123,176 - 9,166,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INPP5F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,561,034 - 129,669,875 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,577,594 - 129,671,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214141,103,045 - 141,195,778 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INPP5F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19112,517,524 - 112,621,452 (+)NCBI
ChlSab1.1 Ensembl9112,517,724 - 112,621,685 (+)Ensembl
Vero_WHO_p1.0NW_02366604873,792,784 - 73,897,076 (+)NCBI
Inpp5f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473727,001,090 - 27,123,022 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 21 6 6 6 6 12 10 4
Low 1 1 6 8 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022411975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022411976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000019415   ⟹   ENSCAFP00000018012
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,878,512 - 29,944,490 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062849   ⟹   ENSCAFP00000054535
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,858,658 - 29,944,490 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074316   ⟹   ENSCAFP00000051053
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,858,658 - 29,943,420 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075781   ⟹   ENSCAFP00000057988
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,878,512 - 29,944,490 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077292   ⟹   ENSCAFP00000056399
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,937,866 - 29,941,929 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078881   ⟹   ENSCAFP00000048362
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2829,858,658 - 29,944,490 (+)Ensembl
RefSeq Acc Id: XM_022411975   ⟹   XP_022267683
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12829,878,489 - 29,945,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022411976   ⟹   XP_022267684
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12829,932,944 - 29,945,598 (+)NCBI
Dog10K_Boxer_Tasha2830,074,815 - 30,087,467 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038440754   ⟹   XP_038296682
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02830,389,637 - 30,477,263 (+)NCBI
RefSeq Acc Id: XM_038440755   ⟹   XP_038296683
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02830,464,417 - 30,477,263 (+)NCBI
RefSeq Acc Id: XM_038460267   ⟹   XP_038316195
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2830,000,260 - 30,087,467 (+)NCBI
RefSeq Acc Id: XM_038515355   ⟹   XP_038371283
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12829,942,569 - 30,029,782 (+)NCBI
RefSeq Acc Id: XM_038515356   ⟹   XP_038371284
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12830,017,240 - 30,029,782 (+)NCBI
RefSeq Acc Id: XM_038578965   ⟹   XP_038434893
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02830,157,914 - 30,245,161 (+)NCBI
RefSeq Acc Id: XM_038578966   ⟹   XP_038434894
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02830,232,509 - 30,245,161 (+)NCBI
RefSeq Acc Id: XM_038643176   ⟹   XP_038499104
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02829,965,152 - 30,052,567 (+)NCBI
RefSeq Acc Id: XM_038643177   ⟹   XP_038499105
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02830,040,028 - 30,052,567 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_022267683   ⟸   XM_022411975
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022267684   ⟸   XM_022411976
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000048362   ⟸   ENSCAFT00000078881
RefSeq Acc Id: ENSCAFP00000051053   ⟸   ENSCAFT00000074316
RefSeq Acc Id: ENSCAFP00000056399   ⟸   ENSCAFT00000077292
RefSeq Acc Id: ENSCAFP00000018012   ⟸   ENSCAFT00000019415
RefSeq Acc Id: ENSCAFP00000054535   ⟸   ENSCAFT00000062849
RefSeq Acc Id: ENSCAFP00000057988   ⟸   ENSCAFT00000075781
RefSeq Acc Id: XP_038371283   ⟸   XM_038515355
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038371284   ⟸   XM_038515356
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038499104   ⟸   XM_038643176
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038499105   ⟸   XM_038643177
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038296682   ⟸   XM_038440754
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038296683   ⟸   XM_038440755
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038316195   ⟸   XM_038460267
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038434893   ⟸   XM_038578965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038434894   ⟸   XM_038578966
- Peptide Label: isoform X2
Protein Domains
hSac2   SAC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012205 Ensembl, ENTREZGENE
NCBI Gene INPP5F ENTREZGENE
VGNC ID VGNC:42034 ENTREZGENE