GPRIN3 (GPRIN family member 3) - Rat Genome Database

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Gene: GPRIN3 (GPRIN family member 3) Canis lupus familiaris
Analyze
Symbol: GPRIN3
Name: GPRIN family member 3
RGD ID: 12217425
Description: INVOLVED IN neuron projection development (inferred); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein-regulated inducer of neurite outgrowth 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13212,501,488 - 12,562,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3212,501,577 - 12,503,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3229,393,389 - 29,463,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03212,540,621 - 12,610,786 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3212,549,793 - 12,552,501 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03212,452,854 - 12,523,002 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03227,392,979 - 27,463,135 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GPRIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13212,501,488 - 12,562,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3212,501,577 - 12,503,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3229,393,389 - 29,463,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03212,540,621 - 12,610,786 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3212,549,793 - 12,552,501 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03212,452,854 - 12,523,002 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03227,392,979 - 27,463,135 (+)NCBIUU_Cfam_GSD_1.0
GPRIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38489,236,383 - 89,307,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl489,236,383 - 89,307,800 (-)EnsemblGRCh38hg38GRCh38
GRCh37490,157,534 - 90,228,951 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36490,384,452 - 90,448,184 (-)NCBINCBI36Build 36hg18NCBI36
Celera487,461,582 - 87,525,350 (-)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef485,916,151 - 85,979,925 (-)NCBIHuRef
CHM1_1490,141,906 - 90,205,629 (-)NCBICHM1_1
T2T-CHM13v2.0492,567,541 - 92,638,966 (-)NCBIT2T-CHM13v2.0
Gprin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39659,317,988 - 59,403,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl659,324,211 - 59,403,279 (-)EnsemblGRCm39 Ensembl
GRCm38659,344,500 - 59,426,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl659,347,226 - 59,426,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv37659,302,455 - 59,376,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36659,282,039 - 59,355,868 (-)NCBIMGSCv36mm8
Celera661,507,631 - 61,580,997 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map628.48NCBI
Gprin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8489,902,198 - 89,987,496 (-)NCBIGRCr8
mRatBN7.2488,572,062 - 88,657,369 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl488,563,607 - 88,657,429 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx493,791,405 - 93,876,684 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0489,566,737 - 89,652,018 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0487,920,508 - 88,013,444 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0489,690,678 - 89,778,302 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl489,693,280 - 89,695,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04154,507,201 - 154,594,720 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4488,376,454 - 88,378,742 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera483,319,305 - 83,406,225 (-)NCBICelera
Cytogenetic Map4q24NCBI
Gprin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955405254,105 - 256,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955405253,917 - 265,309 (-)NCBIChiLan1.0ChiLan1.0
GPRIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2387,245,292 - 87,312,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1487,507,487 - 87,574,345 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0481,530,662 - 81,597,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1492,250,618 - 92,345,452 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl492,257,125 - 92,259,455 (-)Ensemblpanpan1.1panPan2
Gprin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530128,843,048 - 28,905,994 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366851,656,084 - 1,658,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366851,649,740 - 1,712,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPRIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18129,818,975 - 129,878,509 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28139,266,055 - 139,341,917 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPRIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1737,584,298 - 37,652,548 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl737,590,836 - 37,593,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603716,341,170 - 16,415,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gprin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475716,938,060 - 16,940,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475716,931,759 - 17,007,924 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GPRIN3
816 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 7 2 1
Low 5 4 11 5 6 5 3 10 8 6 6
Below cutoff 1 4 1 1 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022413465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005305721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005317026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005382864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005416355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000015661   ⟹   ENSCAFP00000014495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3212,501,577 - 12,503,907 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034072   ⟹   ENSCAFP00845026674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3212,549,793 - 12,552,501 (-)Ensembl
RefSeq Acc Id: XM_022413465   ⟹   XP_022269173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13212,501,488 - 12,562,183 (-)NCBI
Dog10K_Boxer_Tasha3229,393,625 - 29,463,336 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413466   ⟹   XP_022269174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13212,501,488 - 12,561,471 (-)NCBI
Dog10K_Boxer_Tasha3229,394,343 - 29,463,336 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038444127   ⟹   XP_038300055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03212,540,621 - 12,609,830 (-)NCBI
RefSeq Acc Id: XM_038444128   ⟹   XP_038300056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03212,540,621 - 12,610,550 (-)NCBI
RefSeq Acc Id: XM_038444129   ⟹   XP_038300057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03212,540,621 - 12,610,550 (-)NCBI
RefSeq Acc Id: XM_038444130   ⟹   XP_038300058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03212,540,621 - 12,610,786 (-)NCBI
RefSeq Acc Id: XM_038462085   ⟹   XP_038318013
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3229,393,625 - 29,463,336 (+)NCBI
RefSeq Acc Id: XM_038582146   ⟹   XP_038438074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03227,393,933 - 27,463,135 (+)NCBI
RefSeq Acc Id: XM_038582147   ⟹   XP_038438075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03227,393,215 - 27,463,135 (+)NCBI
RefSeq Acc Id: XM_038582148   ⟹   XP_038438076
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03227,393,215 - 27,463,135 (+)NCBI
RefSeq Acc Id: XM_038582149   ⟹   XP_038438077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03227,392,979 - 27,463,135 (+)NCBI
RefSeq Acc Id: XM_038646461   ⟹   XP_038502389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03212,452,854 - 12,521,998 (-)NCBI
RefSeq Acc Id: XM_038646462   ⟹   XP_038502390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03212,452,854 - 12,522,726 (-)NCBI
RefSeq Acc Id: XM_038646463   ⟹   XP_038502391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03212,452,854 - 12,522,726 (-)NCBI
RefSeq Acc Id: XM_038646464   ⟹   XP_038502392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03212,452,854 - 12,523,002 (-)NCBI
RefSeq Acc Id: XM_544978   ⟹   XP_544978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13212,501,488 - 12,562,344 (-)NCBI
Dog10K_Boxer_Tasha3229,393,389 - 29,463,336 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005305721
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03212,606,772 - 12,610,550 (-)NCBI
RefSeq Acc Id: XR_005317026
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3229,393,625 - 29,397,403 (+)NCBI
RefSeq Acc Id: XR_005382864
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03227,393,215 - 27,396,992 (+)NCBI
RefSeq Acc Id: XR_005416355
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03212,518,937 - 12,522,726 (-)NCBI
RefSeq Acc Id: XP_544978   ⟸   XM_544978
- UniProtKB: A0A8P0NC12 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269173   ⟸   XM_022413465
- UniProtKB: A0A8P0NC12 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269174   ⟸   XM_022413466
- UniProtKB: A0A8P0NC12 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000014495   ⟸   ENSCAFT00000015661
RefSeq Acc Id: XP_038502392   ⟸   XM_038646464
RefSeq Acc Id: XP_038502391   ⟸   XM_038646463
RefSeq Acc Id: XP_038502390   ⟸   XM_038646462
RefSeq Acc Id: XP_038502389   ⟸   XM_038646461
RefSeq Acc Id: XP_038300058   ⟸   XM_038444130
- UniProtKB: A0A8I3S106 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300057   ⟸   XM_038444129
- UniProtKB: A0A8I3S106 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300056   ⟸   XM_038444128
- UniProtKB: A0A8I3S106 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300055   ⟸   XM_038444127
- UniProtKB: A0A8I3S106 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318013   ⟸   XM_038462085
- UniProtKB: A0A8P0NC12 (UniProtKB/TrEMBL),   A0A8C0RTB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438077   ⟸   XM_038582149
- UniProtKB: A0A8C0RTB2 (UniProtKB/TrEMBL),   A0A8P0NC12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438075   ⟸   XM_038582147
- UniProtKB: A0A8C0RTB2 (UniProtKB/TrEMBL),   A0A8P0NC12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438076   ⟸   XM_038582148
- UniProtKB: A0A8C0RTB2 (UniProtKB/TrEMBL),   A0A8P0NC12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438074   ⟸   XM_038582146
- UniProtKB: A0A8C0RTB2 (UniProtKB/TrEMBL),   A0A8P0NC12 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845026674   ⟸   ENSCAFT00845034072

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009859 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025071 UniProtKB/TrEMBL
  ENSCAFG00845019318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015661.4 UniProtKB/TrEMBL
  ENSCAFT00030046252.1 UniProtKB/TrEMBL
  ENSCAFT00845034072 ENTREZGENE
  ENSCAFT00845034072.1 UniProtKB/TrEMBL
InterPro GPRIN2-like/GPRIN3 UniProtKB/TrEMBL
  GRIN_C UniProtKB/TrEMBL
NCBI Gene GPRIN3 ENTREZGENE
PANTHER G PROTEIN-REGULATED INDUCER OF NEURITE OUTGROWTH 3 UniProtKB/TrEMBL
  PTHR15718 UniProtKB/TrEMBL
Pfam GRIN_C UniProtKB/TrEMBL
UniProt A0A8C0RTB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S106 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NC12 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41454 ENTREZGENE