FAM162A (family with sequence similarity 162 member A) - Rat Genome Database

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Gene: FAM162A (family with sequence similarity 162 member A) Canis lupus familiaris
Analyze
Symbol: FAM162A
Name: family with sequence similarity 162 member A
RGD ID: 12215567
Description: INVOLVED IN cellular response to hypoxia (inferred); neuron apoptotic process (inferred); positive regulation of apoptotic process (inferred); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred); membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,525,408 - 25,552,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,525,411 - 25,552,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,549,956 - 25,576,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,760,885 - 25,788,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,760,897 - 25,787,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,557,937 - 25,584,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,600,850 - 25,627,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,158,788 - 26,186,295 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM162A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,525,408 - 25,552,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,525,411 - 25,552,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,549,956 - 25,576,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,760,885 - 25,788,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,760,897 - 25,787,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,557,937 - 25,584,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,600,850 - 25,627,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,158,788 - 26,186,295 (+)NCBIUU_Cfam_GSD_1.0
FAM162A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,384,182 - 122,412,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,384,161 - 122,412,334 (+)EnsemblGRCh38hg38GRCh38
GRCh373122,103,029 - 122,131,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,585,713 - 123,611,651 (+)NCBINCBI36Build 36hg18NCBI36
Celera3120,512,651 - 120,538,589 (+)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3119,476,342 - 119,502,272 (+)NCBIHuRef
CHM1_13122,066,508 - 122,092,446 (+)NCBICHM1_1
T2T-CHM13v2.03125,103,734 - 125,131,889 (+)NCBIT2T-CHM13v2.0
Fam162a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,864,214 - 35,891,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,864,131 - 35,891,964 (-)EnsemblGRCm39 Ensembl
GRCm381636,043,844 - 36,071,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,043,761 - 36,071,594 (-)EnsemblGRCm38mm10GRCm38
MGSCv371636,043,930 - 36,071,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361635,963,591 - 35,991,262 (-)NCBIMGSCv36mm8
Celera1636,524,452 - 36,554,817 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.43NCBI
Fam162a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,186,260 - 78,215,186 (+)NCBIGRCr8
mRatBN7.21164,680,978 - 64,709,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,680,323 - 64,711,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,505,954 - 73,535,213 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,168,216 - 66,197,475 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,199,464 - 65,228,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,618,683 - 67,646,253 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,618,625 - 67,646,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,706,160 - 70,733,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,518,103 - 66,546,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1164,149,247 - 64,177,230 (+)NCBICelera
Cytogenetic Map11q22NCBI
Fam162a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,667,922 - 21,694,844 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,668,180 - 21,695,004 (+)NCBIChiLan1.0ChiLan1.0
FAM162A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,329,509 - 120,357,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,334,289 - 120,362,707 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,474,737 - 119,500,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,380,525 - 126,406,366 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,380,525 - 126,406,366 (+)Ensemblpanpan1.1panPan2
Fam162a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,796,339 - 128,824,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,697,595 - 8,730,329 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,697,631 - 8,725,667 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM162A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,115,509 - 138,151,738 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,115,499 - 138,151,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,726,442 - 147,762,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM162A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,451,115 - 58,476,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,449,189 - 58,476,959 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,865,631 - 107,891,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam162a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912739,917 - 762,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624912739,804 - 763,149 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM162A
395 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 2
Medium 3 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000018884   ⟹   ENSCAFP00000017500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3325,525,411 - 25,552,256 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845041038   ⟹   ENSCAFP00845032154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3325,760,897 - 25,784,747 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845041093   ⟹   ENSCAFP00845032202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3325,760,898 - 25,787,353 (+)Ensembl
RefSeq Acc Id: XM_038445130   ⟹   XP_038301058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03325,760,885 - 25,788,402 (+)NCBI
RefSeq Acc Id: XM_038519383   ⟹   XP_038375311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13325,557,937 - 25,584,375 (+)NCBI
RefSeq Acc Id: XM_038583010   ⟹   XP_038438938
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03326,158,788 - 26,186,295 (+)NCBI
RefSeq Acc Id: XM_038647398   ⟹   XP_038503326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03325,600,850 - 25,627,522 (+)NCBI
RefSeq Acc Id: XM_535760   ⟹   XP_535760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13325,525,408 - 25,552,272 (+)NCBI
Dog10K_Boxer_Tasha3325,549,956 - 25,576,605 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_535760   ⟸   XM_535760
- UniProtKB: A0A8C0JY92 (UniProtKB/TrEMBL),   A0A8C0Z4J8 (UniProtKB/TrEMBL),   A0A8I3PIY1 (UniProtKB/TrEMBL),   A0A8C0NI70 (UniProtKB/TrEMBL),   A0A8I3PIU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000017500   ⟸   ENSCAFT00000018884
RefSeq Acc Id: XP_038375311   ⟸   XM_038519383
RefSeq Acc Id: XP_038503326   ⟸   XM_038647398
RefSeq Acc Id: XP_038301058   ⟸   XM_038445130
- UniProtKB: A0A8C0JY92 (UniProtKB/TrEMBL),   A0A8C0Z4J8 (UniProtKB/TrEMBL),   A0A8I3PIY1 (UniProtKB/TrEMBL),   A0A8C0NI70 (UniProtKB/TrEMBL),   A0A8I3PIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438938   ⟸   XM_038583010
- UniProtKB: A0A8C0JY92 (UniProtKB/TrEMBL),   A0A8C0NI70 (UniProtKB/TrEMBL),   A0A8C0Z4J8 (UniProtKB/TrEMBL),   A0A8I3PIU0 (UniProtKB/TrEMBL),   A0A8I3PIY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845032202   ⟸   ENSCAFT00845041093
RefSeq Acc Id: ENSCAFP00845032154   ⟸   ENSCAFT00845041038

Promoters
RGD ID:13688821
Promoter ID:EPDNEW_C6889
Type:initiation region
Name:FAM162A_1
Description:family with sequence similarity 162 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13325,525,438 - 25,525,498EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011890 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013085 UniProtKB/TrEMBL
  ENSCAFG00040022289 UniProtKB/TrEMBL
  ENSCAFG00845023253 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018884.5 UniProtKB/TrEMBL
  ENSCAFT00000096031.1 UniProtKB/TrEMBL
  ENSCAFT00030024195.1 UniProtKB/TrEMBL
  ENSCAFT00030024237.1 UniProtKB/TrEMBL
  ENSCAFT00040041382.1 UniProtKB/TrEMBL
  ENSCAFT00040041412.1 UniProtKB/TrEMBL
  ENSCAFT00845041038.1 UniProtKB/TrEMBL
  ENSCAFT00845041093 ENTREZGENE
  ENSCAFT00845041093.1 UniProtKB/TrEMBL
InterPro DUF1075 UniProtKB/TrEMBL
KEGG Report cfa:478584 UniProtKB/TrEMBL
NCBI Gene FAM162A ENTREZGENE
PANTHER PROTEIN FAM162A UniProtKB/TrEMBL
  PTHR13674 UniProtKB/TrEMBL
Pfam DUF1075 UniProtKB/TrEMBL
UniProt A0A8C0JY92 ENTREZGENE
  A0A8C0NI70 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z4J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PIC6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40612 ENTREZGENE