ARL8A (ADP ribosylation factor like GTPase 8A) - Rat Genome Database

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Gene: ARL8A (ADP ribosylation factor like GTPase 8A) Canis lupus familiaris
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Symbol: ARL8A
Name: ADP ribosylation factor like GTPase 8A
RGD ID: 12214369
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN anterograde axonal transport (inferred); cell division (inferred); protein transport (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); midbody (ortholog); spindle midzone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like 8A; ADP-ribosylation factor-like protein 8A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17875,679 - 877,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7922,825 - 931,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07878,512 - 887,030 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.17866,867 - 875,258 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07975,161 - 983,495 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07999,160 - 1,007,493 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARL8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17875,679 - 877,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7922,825 - 931,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07878,512 - 887,030 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.17866,867 - 875,258 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07975,161 - 983,495 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07999,160 - 1,007,493 (+)NCBIUU_Cfam_GSD_1.0
ARL8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,133,404 - 202,144,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,133,404 - 202,144,743 (-)EnsemblGRCh38hg38GRCh38
GRCh371202,102,532 - 202,113,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,368,600 - 200,380,489 (-)NCBINCBI36Build 36hg18NCBI36
Build 341198,833,633 - 198,845,523NCBI
Celera1175,225,835 - 175,237,724 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,268,070 - 173,279,422 (-)NCBIHuRef
CHM1_11203,524,823 - 203,536,155 (-)NCBICHM1_1
T2T-CHM13v2.01201,390,975 - 201,402,296 (-)NCBIT2T-CHM13v2.0
Arl8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,074,572 - 135,084,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,074,562 - 135,084,007 (+)EnsemblGRCm39 Ensembl
GRCm381135,146,834 - 135,156,268 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,146,824 - 135,156,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,043,411 - 137,052,845 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,963,245 - 136,972,679 (+)NCBIMGSCv36mm8
Celera1137,773,693 - 137,783,013 (+)NCBICelera
Cytogenetic Map1E4NCBI
Arl8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,137,632 - 49,146,633 (+)NCBIGRCr8
mRatBN7.21346,585,845 - 46,594,851 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,585,845 - 46,594,851 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,192,596 - 49,201,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,480,668 - 50,489,635 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,746,744 - 47,755,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,972,974 - 51,981,976 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,972,974 - 51,981,976 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,024,684 - 57,033,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,108,242 - 48,117,244 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1346,911,113 - 46,920,108 (+)NCBICelera
Cytogenetic Map13q13NCBI
Arl8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,224,124 - 38,226,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,223,115 - 38,226,563 (-)NCBIChiLan1.0ChiLan1.0
ARL8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,237,090 - 47,248,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,201,781 - 47,213,092 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,731,381 - 177,742,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,033,376 - 182,045,145 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,033,376 - 182,045,145 (-)Ensemblpanpan1.1panPan2
Arl8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,160,437 - 73,170,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,395,111 - 2,404,972 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,395,098 - 2,404,974 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,314,932 - 24,324,228 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,314,929 - 24,324,225 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,715,516 - 28,718,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARL8A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,261,506 - 27,272,477 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,261,562 - 27,271,416 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,041,575 - 28,052,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl8a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,593,619 - 8,602,647 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,594,097 - 8,602,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARL8A
15 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022421678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038480560   ⟹   XP_038336488
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17866,867 - 875,258 (+)NCBI
RefSeq Acc Id: XM_038480561   ⟹   XP_038336489
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17866,867 - 875,258 (+)NCBI
RefSeq Acc Id: XM_038541886   ⟹   XP_038397814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07999,160 - 1,007,493 (+)NCBI
RefSeq Acc Id: XM_038541888   ⟹   XP_038397816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07999,160 - 1,007,493 (+)NCBI
RefSeq Acc Id: XM_038560639   ⟹   XP_038416567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7922,825 - 931,231 (+)NCBI
RefSeq Acc Id: XM_038560646   ⟹   XP_038416574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7922,825 - 931,231 (+)NCBI
RefSeq Acc Id: XM_038606019   ⟹   XP_038461947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07975,161 - 983,495 (+)NCBI
RefSeq Acc Id: XM_038606020   ⟹   XP_038461948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07975,161 - 983,495 (+)NCBI
RefSeq Acc Id: XM_038670724   ⟹   XP_038526652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07878,512 - 887,030 (+)NCBI
RefSeq Acc Id: XM_038670725   ⟹   XP_038526653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07878,512 - 887,030 (+)NCBI
RefSeq Acc Id: XP_038336489   ⟸   XM_038480561
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038336488   ⟸   XM_038480560
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461948   ⟸   XM_038606020
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461947   ⟸   XM_038606019
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038526653   ⟸   XM_038670725
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038526652   ⟸   XM_038670724
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KUD0 (UniProtKB/TrEMBL),   A0A8C0LXA3 (UniProtKB/TrEMBL),   A0A8P0TVH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416574   ⟸   XM_038560646
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038416567   ⟸   XM_038560639
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KUD0 (UniProtKB/TrEMBL),   A0A8C0LXA3 (UniProtKB/TrEMBL),   A0A8P0TVH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397816   ⟸   XM_038541888
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038397814   ⟸   XM_038541886
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KUD0 (UniProtKB/TrEMBL),   A0A8C0LXA3 (UniProtKB/TrEMBL),   A0A8P0TVH5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000058723 UniProtKB/TrEMBL
  ENSCAFG00030001001 UniProtKB/TrEMBL
  ENSCAFG00040003702 UniProtKB/TrEMBL
  ENSCAFG00845016129 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000095181.1 UniProtKB/TrEMBL
  ENSCAFT00000109144.1 UniProtKB/TrEMBL
  ENSCAFT00030001745.1 UniProtKB/TrEMBL
  ENSCAFT00030001756.1 UniProtKB/TrEMBL
  ENSCAFT00040007229.1 UniProtKB/TrEMBL
  ENSCAFT00845028695.1 UniProtKB/TrEMBL
  ENSCAFT00845028746 ENTREZGENE
  ENSCAFT00845028746.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Arl8a/8b UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene ARL8A ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 UniProtKB/TrEMBL
  ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0KUD0 ENTREZGENE
  A0A8C0LTP8_CANLF UniProtKB/TrEMBL
  A0A8C0LXA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NZB5_CANLF UniProtKB/TrEMBL
  A0A8I3NZH2_CANLF UniProtKB/TrEMBL
  A0A8P0TVH5 ENTREZGENE
UniProt Secondary A0A8P0TVH5 UniProtKB/TrEMBL