CDKN1A (cyclin dependent kinase inhibitor 1A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CDKN1A (cyclin dependent kinase inhibitor 1A) Canis lupus familiaris
Analyze
Symbol: CDKN1A
Name: cyclin dependent kinase inhibitor 1A
RGD ID: 12213368
Description: ENCODES a protein that exhibits cyclin binding (ortholog); molecular function activator activity (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular response to cell-matrix adhesion (ortholog); cellular response to gamma radiation (ortholog); PARTICIPATES IN G1/S transition pathway; Notch signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH acoustic neuroma (ortholog); Acute Experimental Pancreatitis (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog); INTERACTS WITH masitinib
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinase inhibitor 1; p21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,746,898 - 5,755,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,745,852 - 5,892,281 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha125,765,839 - 5,774,065 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0126,095,734 - 6,103,965 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,095,093 - 6,241,357 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,750,615 - 5,758,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,829,928 - 5,838,160 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,928,229 - 5,936,457 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View
acoustic neuroma  (ISO)
Acute Experimental Pancreatitis  (ISO)
Animal Mammary Neoplasms  (ISO)
Arsenic Poisoning  (ISO)
atrial fibrillation  (ISO)
autosomal dominant polycystic kidney disease  (ISO)
Barrett's esophagus  (ISO)
Bowen's Disease  (ISO)
Brain Injuries  (ISO)
Breast Neoplasms  (ISO)
carcinoma  (ISO)
cervix uteri carcinoma in situ  (ISO)
cholesteatoma of middle ear  (ISO)
chronic obstructive pulmonary disease  (ISO)
Colonic Neoplasms  (ISO)
Congenital Cholesteatoma  (ISO)
Diabetic Nephropathies  (ISO)
ductal carcinoma in situ  (ISO)
Embryo Loss  (ISO)
Endometrial Neoplasms  (ISO)
Esophageal Neoplasms  (ISO)
esophagus squamous cell carcinoma  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Liver Cirrhosis  (ISO)
Experimental Liver Neoplasms  (ISO)
facioscapulohumeral muscular dystrophy  (ISO)
Fuchs' endothelial dystrophy  (ISO)
growth hormone secreting pituitary adenoma  (ISO)
Habitual Abortions  (ISO)
Hearing Loss, Noise-Induced  (ISO)
hepatocellular carcinoma  (ISO)
high grade glioma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Hyperoxia  (ISO)
Hyperplasia  (ISO)
Hypertrophy  (ISO)
Hypovolemia  (ISO)
Intestinal Neoplasms  (ISO)
inverted papilloma  (ISO)
kidney disease  (ISO)
laryngeal squamous cell carcinoma  (ISO)
Lip Neoplasms  (ISO)
lipoid nephrosis  (ISO)
liver benign neoplasm  (ISO)
Liver Neoplasms  (ISO)
localized scleroderma  (ISO)
Lung Neoplasms  (ISO)
lung non-small cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
macular degeneration  (ISO)
malignant mesothelioma  (ISO)
maxillary sinus squamous cell carcinoma  (ISO)
melanoma  (ISO)
Neoplasm Metastasis  (ISO)
ocular hypertension  (ISO)
Oral Lichen Planus  (ISO)
oral mucosa leukoplakia  (ISO)
oral squamous cell carcinoma  (ISO)
Ovarian Neoplasms  (ISO)
pancreatic carcinoma  (ISO)
pancreatic ductal carcinoma  (ISO)
papilloma  (ISO)
Phyllodes Tumor  (ISO)
Pituitary Neoplasms  (ISO)
pre-malignant neoplasm  (ISO)
Premature Aging  (ISO)
primary biliary cholangitis  (ISO)
primary open angle glaucoma  (ISO)
prostate cancer  (ISO)
Prostatic Neoplasms  (ISO)
psoriasis  (ISO)
pulmonary hypertension  (ISO)
renal hypertension  (ISO)
Reperfusion Injury  (ISO)
retinal degeneration  (ISO)
RETINAL DYSTROPHY WITH INNER RETINAL DYSFUNCTION AND GANGLION CELL ABNORMALITIES  (ISO)
Salivary Gland Neoplasms  (ISO)
sarcoidosis  (ISO)
Sarcopenia  (ISO)
sebaceous gland neoplasm  (ISO)
Sepsis  (ISO)
serous cystadenocarcinoma  (ISO)
Skin Neoplasms  (ISO)
squamous cell carcinoma  (ISO)
stomach carcinoma  (ISO)
Stomach Neoplasms  (ISO)
systemic lupus erythematosus  (ISO)
T-cell non-Hodgkin lymphoma  (ISO)
Thyroid Neoplasms  (ISO)
Tongue Neoplasms  (ISO)
tongue squamous cell carcinoma  (ISO)
transitional cell carcinoma  (ISO)
ulcerative colitis  (ISO)
urinary bladder cancer  (ISO)
Uterine Cervical Neoplasms  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
masitinib  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ regeneration  (ISO)
cellular response to amino acid starvation  (IEA)
cellular response to cell-matrix adhesion  (ISO)
cellular response to gamma radiation  (ISO)
cellular response to heat  (ISO)
cellular response to ionizing radiation  (IEA)
cellular response to UV-B  (ISO)
cellular senescence  (IEA,ISO)
DNA damage response  (IBA,ISO)
DNA damage response, signal transduction by p53 class mediator  (IEA,ISO)
epidermis development  (ISO)
fibroblast proliferation  (ISO)
heart development  (ISO)
import into nucleus  (IEA)
in utero embryonic development  (ISO)
intestinal epithelial cell maturation  (ISO)
intrinsic apoptotic signaling pathway  (IEA)
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  (ISO)
keratinocyte differentiation  (ISO)
keratinocyte proliferation  (ISO)
mitotic G1 DNA damage checkpoint signaling  (ISO)
mitotic G2 DNA damage checkpoint signaling  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cardiac muscle tissue regeneration  (ISO)
negative regulation of cell growth  (ISO)
negative regulation of cell population proliferation  (IEA,ISO)
negative regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
negative regulation of DNA biosynthetic process  (ISO)
negative regulation of G1/S transition of mitotic cell cycle  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of growth  (IEA)
negative regulation of vascular associated smooth muscle cell proliferation  (ISO)
oncogene-induced cell senescence  (ISO)
positive regulation of B cell proliferation  (ISO)
positive regulation of cell population proliferation  (IEA)
positive regulation of fibroblast proliferation  (ISO)
positive regulation of programmed cell death  (ISO)
positive regulation of protein kinase activity  (ISO)
positive regulation of reactive oxygen species metabolic process  (ISO)
positive regulation of response to biotic stimulus  (ISO)
protein import into nucleus  (ISO)
Ras protein signal transduction  (ISO)
regulation of cell cycle  (IEA,ISO)
regulation of cell cycle G1/S phase transition  (ISO)
regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
regulation of DNA biosynthetic process  (IEA,ISO)
regulation of G1/S transition of mitotic cell cycle  (IBA)
regulation of G2/M transition of mitotic cell cycle  (ISO)
regulation of mitotic cell cycle  (IEA,ISO)
response to aldosterone  (ISO)
response to arsenic-containing substance  (ISO)
response to corticosterone  (ISO)
response to glucocorticoid  (ISO)
response to hyperoxia  (ISO)
response to toxic substance  (ISO)
response to UV  (ISO)
response to X-ray  (ISO)
response to xenobiotic stimulus  (ISO)
signal transduction by p53 class mediator  (IEA)
tissue regeneration  (ISO)
wound healing  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:16953075   PMID:17300726   PMID:19130492   PMID:22301074   PMID:26876176   PMID:30032202   PMID:30133945   PMID:33301127  


Genomics

Comparative Map Data
CDKN1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,746,898 - 5,755,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,745,852 - 5,892,281 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha125,765,839 - 5,774,065 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0126,095,734 - 6,103,965 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,095,093 - 6,241,357 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,750,615 - 5,758,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,829,928 - 5,838,160 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,928,229 - 5,936,457 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CDKN1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,676,463 - 36,687,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,676,441 - 36,687,397 (+)Ensemblhg38GRCh38
GRCh37636,644,240 - 36,655,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,754,465 - 36,763,087 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34636,754,464 - 36,763,086NCBI
Celera638,201,500 - 38,210,146 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,362,600 - 36,373,330 (+)NCBIHuRef
CHM1_1636,645,994 - 36,657,029 (+)NCBICHM1_1
T2T-CHM13v2.0636,497,108 - 36,508,013 (+)NCBIT2T-CHM13v2.0
Cdkn1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,309,953 - 29,319,696 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,309,950 - 29,319,701 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381729,090,979 - 29,100,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,090,976 - 29,100,727 (+)Ensemblmm10GRCm38
MGSCv371729,227,931 - 29,237,667 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361728,821,439 - 28,828,386 (+)NCBIMGSCv36mm8
Celera1729,647,617 - 29,657,304 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.12NCBI
Cdkn1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,150,820 - 7,161,373 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,153,958 - 7,164,969 (+)EnsemblGRCr8
mRatBN7.2207,149,177 - 7,159,727 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,149,217 - 7,159,585 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx207,860,502 - 7,870,951 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,222,359 - 7,232,808 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,697,344 - 7,707,907 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,348,422 - 6,358,864 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,351,458 - 6,358,864 (+)Ensemblrn6Rnor6.0
Rnor_5.0208,592,437 - 8,602,879 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,376,325 - 7,386,778 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera208,699,290 - 8,709,718 (+)NCBICelera
RGSC_v3.1207,379,612 - 7,385,803 (+)NCBI
Cytogenetic Map20p12NCBI
Cdkn1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,254,309 - 6,261,479 (-)Ensembl
ChiLan1.0NW_0049554376,254,638 - 6,261,278 (-)NCBIChiLan1.0ChiLan1.0
CDKN1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,147,920 - 51,156,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,017,498 - 47,026,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,241,405 - 36,250,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,436,963 - 37,445,599 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,436,990 - 37,445,599 (+)EnsemblpanPan2panpan1.1
Cdkn1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,235,060 - 41,242,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,717,260 - 22,725,182 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,717,308 - 22,725,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDKN1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,354,672 - 32,363,761 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1732,354,776 - 32,363,771 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,258,037 - 37,267,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDKN1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,445,668 - 35,454,334 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,445,223 - 35,454,342 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604436,625,094 - 36,634,245 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdkn1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,108,874 - 21,115,885 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475421,109,074 - 21,115,869 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdkn1a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1184,770,865 - 4,776,889 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in CDKN1A
88 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005627279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_532125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ830019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC586433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000044360   ⟹   ENSCAFP00000037897
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl125,745,852 - 5,892,281 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000071118   ⟹   ENSCAFP00000050190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl125,745,852 - 5,752,358 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845016928   ⟹   ENSCAFP00845013176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl126,095,093 - 6,241,357 (+)Ensembl
RefSeq Acc Id: XM_005627279   ⟹   XP_005627336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1125,746,911 - 5,755,103 (+)NCBI
Dog10K_Boxer_Tasha125,765,879 - 5,774,065 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038491658   ⟹   XP_038347586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1125,750,615 - 5,758,848 (+)NCBI
RefSeq Acc Id: XM_038491659   ⟹   XP_038347587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1125,750,636 - 5,758,848 (+)NCBI
RefSeq Acc Id: XM_038553885   ⟹   XP_038409813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0125,928,229 - 5,936,457 (+)NCBI
RefSeq Acc Id: XM_038553886   ⟹   XP_038409814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0125,928,250 - 5,936,457 (+)NCBI
RefSeq Acc Id: XM_038617745   ⟹   XP_038473673
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0125,829,928 - 5,838,160 (+)NCBI
RefSeq Acc Id: XM_038617746   ⟹   XP_038473674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0125,829,949 - 5,838,160 (+)NCBI
RefSeq Acc Id: XM_038683339   ⟹   XP_038539267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0126,095,734 - 6,103,965 (+)NCBI
RefSeq Acc Id: XM_038683340   ⟹   XP_038539268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0126,095,755 - 6,103,965 (+)NCBI
RefSeq Acc Id: XM_532125   ⟹   XP_532125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1125,746,898 - 5,755,103 (+)NCBI
Dog10K_Boxer_Tasha125,765,839 - 5,774,065 (+)NCBI
Sequence:
RefSeq Acc Id: XP_532125   ⟸   XM_532125
- UniProtKB: A0A7I8E886 (UniProtKB/TrEMBL),   A0A8C0K0B2 (UniProtKB/TrEMBL),   Q683K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005627336   ⟸   XM_005627279
- UniProtKB: A0A7I8E886 (UniProtKB/TrEMBL),   A0A8C0K0B2 (UniProtKB/TrEMBL),   Q683K8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000037897   ⟸   ENSCAFT00000044360
Ensembl Acc Id: ENSCAFP00000050190   ⟸   ENSCAFT00000071118
RefSeq Acc Id: XP_038347586   ⟸   XM_038491658
RefSeq Acc Id: XP_038347587   ⟸   XM_038491659
RefSeq Acc Id: XP_038473673   ⟸   XM_038617745
RefSeq Acc Id: XP_038473674   ⟸   XM_038617746
RefSeq Acc Id: XP_038539267   ⟸   XM_038683339
- UniProtKB: A0A7I8E886 (UniProtKB/TrEMBL),   A0A8C0K0B2 (UniProtKB/TrEMBL),   Q683K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539268   ⟸   XM_038683340
- UniProtKB: A0A7I8E886 (UniProtKB/TrEMBL),   A0A8C0K0B2 (UniProtKB/TrEMBL),   Q683K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409813   ⟸   XM_038553885
- UniProtKB: Q683K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409814   ⟸   XM_038553886
- UniProtKB: Q683K8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845013176   ⟸   ENSCAFT00845016928
Protein Domains
Cyclin-dependent kinase inhibitor

Promoters
RGD ID:13685403
Promoter ID:EPDNEW_C3471
Type:single initiation site
Name:CDKN1A_1
Description:cyclin dependent kinase inhibitor 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1125,746,922 - 5,746,982EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029853 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040019343 UniProtKB/TrEMBL
  ENSCAFG00845009606 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044360.3 UniProtKB/TrEMBL
  ENSCAFT00000071118.2 UniProtKB/TrEMBL
  ENSCAFT00040035767.1 UniProtKB/TrEMBL
  ENSCAFT00040035804.1 UniProtKB/TrEMBL
  ENSCAFT00845016928.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.365.10 UniProtKB/TrEMBL
InterPro CDI_dom UniProtKB/TrEMBL
  CDI_dom_sf UniProtKB/TrEMBL
  CDKN1A UniProtKB/TrEMBL
KEGG Report cfa:474890 UniProtKB/TrEMBL
NCBI Gene CDKN1A ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 1 UniProtKB/TrEMBL
  PTHR46778 UniProtKB/TrEMBL
Pfam CDI UniProtKB/TrEMBL
UniProt A0A7I8E886 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0K0B2 ENTREZGENE
  A0A8C0T3K6_CANLF UniProtKB/TrEMBL
  A0A8C0T8X9_CANLF UniProtKB/TrEMBL
  A0A8I3N2Y4_CANLF UniProtKB/TrEMBL
  Q683K8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0SSL8 UniProtKB/TrEMBL
  A0A8P0T2Y1 UniProtKB/TrEMBL
VGNC ID VGNC:39068 ENTREZGENE