LRRC24 (leucine rich repeat containing 24)

Gene: LRRC24 (leucine rich repeat containing 24) Canis lupus familiaris

Analyze

Symbol:

LRRC24

Name:

leucine rich repeat containing 24

RGD ID:

12210704

Description:

INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 24

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,941,483 - 37,943,866 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,940,594 - 37,947,991 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,901,831 - 37,907,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,414,816 - 38,420,249 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,414,887 - 38,417,919 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,106,760 - 38,112,190 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,215,174 - 38,220,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,691,653 - 38,697,087 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Baller-Gerold syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of synapse assembly (IEA,ISO)

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRRC24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,941,483 - 37,943,866 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,940,594 - 37,947,991 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,901,831 - 37,907,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,414,816 - 38,420,249 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,414,887 - 38,417,919 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,106,760 - 38,112,190 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,215,174 - 38,220,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,691,653 - 38,697,087 (-)	NCBI		UU_Cfam_GSD_1.0

LRRC24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	144,522,388 - 144,527,033 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	144,522,388 - 144,527,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	145,747,772 - 145,752,417 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	145,718,580 - 145,723,216 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	141,923,441 - 141,928,096 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	140,861,246 - 140,865,901 (-)	NCBI		HuRef
CHM1_1	8	145,785,951 - 145,790,606 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	145,692,574 - 145,697,219 (-)	NCBI		T2T-CHM13v2.0

Lrrc24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,599,476 - 76,606,373 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	76,599,476 - 76,606,373 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	76,715,276 - 76,722,173 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,715,276 - 76,722,173 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,545,706 - 76,552,603 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	76,542,531 - 76,549,428 (-)	NCBI		MGSCv36	mm8
Celera	15	78,208,886 - 78,215,783 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.28	NCBI

Lrrc24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	110,317,935 - 110,325,201 (-)	NCBI		GRCr8
mRatBN7.2	7	108,437,296 - 108,444,561 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	108,437,296 - 108,444,438 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,179,228 - 110,186,227 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	112,402,802 - 112,409,802 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	112,363,539 - 112,370,540 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	117,779,733 - 117,786,872 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,779,620 - 117,786,872 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	117,767,712 - 117,774,850 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,766,704 - 114,775,147 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	114,801,019 - 114,805,994 (-)	NCBI
Celera	7	104,787,181 - 104,793,930 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Lrrc24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,146,712 - 3,150,141 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,146,712 - 3,151,828 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	162,014,570 - 162,020,244 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,543,901 - 137,546,495 (-)	NCBI		NHGRI_mPanPan1

Lrrc24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	322,548 - 325,334 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,748,770 - 7,751,127 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,746,745 - 7,751,433 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	277,626 - 282,584 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	277,632 - 282,589 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	368,634 - 373,592 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	138,736,707 - 138,741,362 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	138,732,525 - 138,739,986 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	1,113,503 - 1,118,210 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	12,336,401 - 12,341,422 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	12,336,384 - 12,341,244 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LRRC24
9 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	1		22	6		6		1	12	8	5	4
Low	4	5			6		2	5			5	2
Below cutoff							4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038425320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038555865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038555866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038555867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038555868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_847288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000046069 ⟹ ENSCAFP00000040666

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	37,940,594 - 37,945,872 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000065824 ⟹ ENSCAFP00000064970

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	37,940,594 - 37,944,626 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000080215 ⟹ ENSCAFP00000050894

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	37,940,594 - 37,947,991 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020727 ⟹ ENSCAFP00845016257

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	38,414,887 - 38,417,919 (-)	Ensembl

RefSeq Acc Id:

XM_038425320 ⟹ XP_038281248

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	37,901,831 - 37,906,066 (-)	NCBI

RefSeq Acc Id:

XM_038425329 ⟹ XP_038281257

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	37,901,839 - 37,906,202 (-)	NCBI

RefSeq Acc Id:

XM_038425338 ⟹ XP_038281266

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	37,901,839 - 37,907,263 (-)	NCBI

RefSeq Acc Id:

XM_038493551 ⟹ XP_038349479

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	38,106,768 - 38,110,994 (-)	NCBI

RefSeq Acc Id:

XM_038493552 ⟹ XP_038349480

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	38,106,760 - 38,110,994 (-)	NCBI

RefSeq Acc Id:

XM_038493553 ⟹ XP_038349481

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	38,106,768 - 38,111,130 (-)	NCBI

RefSeq Acc Id:

XM_038493554 ⟹ XP_038349482

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	38,106,768 - 38,112,190 (-)	NCBI

RefSeq Acc Id:

XM_038555865 ⟹ XP_038411793

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	38,691,661 - 38,695,888 (-)	NCBI

RefSeq Acc Id:

XM_038555866 ⟹ XP_038411794

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	38,691,653 - 38,695,888 (-)	NCBI

RefSeq Acc Id:

XM_038555867 ⟹ XP_038411795

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	38,691,661 - 38,696,024 (-)	NCBI

RefSeq Acc Id:

XM_038555868 ⟹ XP_038411796

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	38,691,661 - 38,697,087 (-)	NCBI

RefSeq Acc Id:

XM_038619781 ⟹ XP_038475709

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	13	38,215,182 - 38,219,409 (-)	NCBI

RefSeq Acc Id:

XM_038619782 ⟹ XP_038475710

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	13	38,215,174 - 38,219,409 (-)	NCBI

RefSeq Acc Id:

XM_038619783 ⟹ XP_038475711

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	13	38,215,182 - 38,219,521 (-)	NCBI

RefSeq Acc Id:

XM_038619784 ⟹ XP_038475712

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	13	38,215,182 - 38,220,601 (-)	NCBI

RefSeq Acc Id:

XM_038685393 ⟹ XP_038541321

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	38,414,824 - 38,419,051 (-)	NCBI

RefSeq Acc Id:

XM_038685394 ⟹ XP_038541322

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	38,414,816 - 38,419,051 (-)	NCBI

RefSeq Acc Id:

XM_038685395 ⟹ XP_038541323

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	38,414,824 - 38,419,187 (-)	NCBI

RefSeq Acc Id:

XM_038685396 ⟹ XP_038541324

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	38,414,824 - 38,420,249 (-)	NCBI

RefSeq Acc Id:

XM_847288 ⟹ XP_852381

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	13	37,941,483 - 37,943,866 (-)	NCBI
Dog10K_Boxer_Tasha	13	37,901,839 - 37,906,066 (-)	NCBI

Sequence:

show sequence

ATGGCCCCGGGGGCGCCCACGCTGCTGCTGCTGTGGCTGCTGTGGCTCCCCGGCTGCCCGCCCC
GCGCTGCCGGCTGCCCGGCCGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGCGGCGCCCTGCG
GCTGCGCGGCGTCCCGCCCGGAATCCCACCCGGGACGCAGACGCTGTTCCTGCAGGACAACAGC
ATCGCGCGCCTGGACCCAGGCATCCTGGCGCCTCTCGCCGCCCTGCGCCGCCTCTACCTACACA
ACAACAGCCTGCGCGCCCTGGAGCCTGGCGCCTTCCGCGCGCAGTCATGCCTGCTGGAACTGGC
GCTCACCGGGAACCGGCTGCGCGGCCTGCGAGTCGGCGCCTTCGCAGGCCTGGCTCAGCTGCGC
GCGCTCTACCTGGCGGGTAACCAGCTGGGGCAGCTGCTGGACTTCACCTTCCTGCACCTGCCGC
GACTGCAGGAGCTGCACCTGCAGGACAACAGCATTGAGCTGCTGGAGGACCAGGCCCTGGCGGG
GCTCTCCTCACTGGCGCTGCTGGACCTCAGCAGAAACCACCTGGGCACCCTCAGCCGCGAGGCC
CTCCGGCCCCTGGCCAGCCTGCAGGTCCTGCGCCTCACAGAGAACCCTTGGCGCTGCGACTGCG
CCCTGCACTGGCTGGGAGCCTGGATTAAGGAGGGCGGCCAGCGGCTGCTCAGCTCCAGGGACAA
GAAGATCGTGTGCGCCGAGCCCCCACGCCTGGCGCTGCAGAGCCTCCTGGACGTTTCCGGCAGC
AGCCTCATTTGCATCCCGCCCTCGGTGCACGTGGAGCCGCTCGAGGTGACGGCCAACCTGGGCG
AGGACCTGCGGGTGGCCTGCCAGGCTTCGGGCTACCCGCAGCCCCTGGTCACCTGGAGAAAGGT
GGCGCAGCCGCGCGACGGGCAGCCGCGGGCGCAGGCGCAGGCGGAGGGCGGGGCGCCGCGCCCC
GGCGGCCCCGACACGGGCAGCGGCATGCTGTTCCTTAGCAACATCACTCTGGCCCATGCCGGCA
AGTACGAGTGCGAGGCCTCCAACGCCGGCGGCGCCGCCCGCGTGCCCTTCCAGCTCCTGGTCAA
CCTGTCCCGGCCGCAGCCGCCGCAGCCCGCGCCGCCGCCGCCCCCGCCCGCCGGGCCCGTCAGC
CACGAGCCGCTGCAGGAGGCGGGCAGCATGGCCTTCCGCGCCCTGGGCCTGGCCACGCAGACGG
CCGTGGCGGCCGCCATCGCGCTGCTGGCGCTCACGGCGCTGCTGCTGGCCGCCATGATCTGCCG
CCGGCGCCGCAAGCGGAAAAAGGCGCCGGGACCGCCGGGCGAGGGCGCGCTCTTCGTCAACGAC
TACTCGGACGGGCCGTGCACCTTCGCGCAGCTCGAGGAGCTCCGCGACGAGCGAGGCCACGAGA
TGTTCGTCATCGACCGCTCCAAGCCGCTCTTCGCTGACGTCCCGACGGAGGCGGCCGACGGTGC
GGGGCCCGGGCTCCTGCTGCAGCCGCCCGCAGCCTACGAGATCCACTGCTGAGCGGCCGGGCCG
AGGGGCGGGCGCGGGCTGATGACGTGGGCCGCGCGGATTGGCCGGCCGGCGGGCTCGGCCCGCG
CATGCTCCGGCGCGCTCAGTAAAGGGTCGAAGCTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038281248	(Get FASTA)	NCBI Sequence Viewer
	XP_038281257	(Get FASTA)	NCBI Sequence Viewer
	XP_038281266	(Get FASTA)	NCBI Sequence Viewer
	XP_038349479	(Get FASTA)	NCBI Sequence Viewer
	XP_038349480	(Get FASTA)	NCBI Sequence Viewer
	XP_038349481	(Get FASTA)	NCBI Sequence Viewer
	XP_038349482	(Get FASTA)	NCBI Sequence Viewer
	XP_038411793	(Get FASTA)	NCBI Sequence Viewer
	XP_038411794	(Get FASTA)	NCBI Sequence Viewer
	XP_038411795	(Get FASTA)	NCBI Sequence Viewer
	XP_038411796	(Get FASTA)	NCBI Sequence Viewer
	XP_038475709	(Get FASTA)	NCBI Sequence Viewer
	XP_038475710	(Get FASTA)	NCBI Sequence Viewer
	XP_038475711	(Get FASTA)	NCBI Sequence Viewer
	XP_038475712	(Get FASTA)	NCBI Sequence Viewer
	XP_038541321	(Get FASTA)	NCBI Sequence Viewer
	XP_038541322	(Get FASTA)	NCBI Sequence Viewer
	XP_038541323	(Get FASTA)	NCBI Sequence Viewer
	XP_038541324	(Get FASTA)	NCBI Sequence Viewer
	XP_852381	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000040666.2
	ENSCAFP00000050894.2
	ENSCAFP00030009154.1
	ENSCAFP00040034233.1
	ENSCAFP00845016257
	ENSCAFP00845016257.1

RefSeq Acc Id:	XP_852381 ⟸ XM_847288
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NG48 (UniProtKB/TrEMBL), A0A8P0NRS5 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPGAPTLLLLWLLWLPGCPPRAAGCPAACRCYSATVECGALRLRGVPPGIPPGTQTLFLQDNS IARLDPGILAPLAALRRLYLHNNSLRALEPGAFRAQSCLLELALTGNRLRGLRVGAFAGLAQLR ALYLAGNQLGQLLDFTFLHLPRLQELHLQDNSIELLEDQALAGLSSLALLDLSRNHLGTLSREA LRPLASLQVLRLTENPWRCDCALHWLGAWIKEGGQRLLSSRDKKIVCAEPPRLALQSLLDVSGS SLICIPPSVHVEPLEVTANLGEDLRVACQASGYPQPLVTWRKVAQPRDGQPRAQAQAEGGAPRP GGPDTGSGMLFLSNITLAHAGKYECEASNAGGAARVPFQLLVNLSRPQPPQPAPPPPPPAGPVS HEPLQEAGSMAFRALGLATQTAVAAAIALLALTALLLAAMICRRRRKRKKAPGPPGEGALFVND YSDGPCTFAQLEELRDERGHEMFVIDRSKPLFADVPTEAADGAGPGLLLQPPAAYEIHC hide sequence

RefSeq Acc Id:

ENSCAFP00000050894 ⟸ ENSCAFT00000080215

RefSeq Acc Id:

ENSCAFP00000064970 ⟸ ENSCAFT00000065824

RefSeq Acc Id:

ENSCAFP00000040666 ⟸ ENSCAFT00000046069

RefSeq Acc Id:	XP_038349480 ⟸ XM_038493552
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038349482 ⟸ XM_038493554
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038349481 ⟸ XM_038493553
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038349479 ⟸ XM_038493551
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038475710 ⟸ XM_038619782
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038475712 ⟸ XM_038619784
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038475711 ⟸ XM_038619783
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038475709 ⟸ XM_038619781
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038541322 ⟸ XM_038685394
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038541324 ⟸ XM_038685396
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038541323 ⟸ XM_038685395
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038541321 ⟸ XM_038685393
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NG48 (UniProtKB/TrEMBL), A0A8P0NRS5 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281248 ⟸ XM_038425320
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038281266 ⟸ XM_038425338
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281257 ⟸ XM_038425329
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038411794 ⟸ XM_038555866
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038411796 ⟸ XM_038555868
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038411795 ⟸ XM_038555867
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MGS6 (UniProtKB/TrEMBL), A0A8C0R517 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038411793 ⟸ XM_038555865
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NG48 (UniProtKB/TrEMBL), A0A8P0NRS5 (UniProtKB/TrEMBL), A0A8P0T3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845016257 ⟸ ENSCAFT00845020727

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000028687	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005695	UniProtKB/TrEMBL
	ENSCAFG00040021159	UniProtKB/TrEMBL
	ENSCAFG00845011689	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000046069.3	UniProtKB/TrEMBL
	ENSCAFT00000080215.2	UniProtKB/TrEMBL
	ENSCAFT00030010450.1	UniProtKB/TrEMBL
	ENSCAFT00040039245.1	UniProtKB/TrEMBL
	ENSCAFT00845020727	ENTREZGENE
	ENSCAFT00845020727.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
NCBI Gene	LRRC24	ENTREZGENE
PANTHER	KEKKON 5, ISOFORM A	UniProtKB/TrEMBL
	SYNAPTIC ADHESION-LIKE MOLECULE SALM	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8C0MGS6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0R517	ENTREZGENE
	A0A8I3NG48	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NRS5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0T3K3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:42790	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar