PI4K2A (phosphatidylinositol 4-kinase type 2 alpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PI4K2A (phosphatidylinositol 4-kinase type 2 alpha) Canis lupus familiaris
Analyze
Symbol: PI4K2A
Name: phosphatidylinositol 4-kinase type 2 alpha
RGD ID: 12210526
Description: ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN basophil degranulation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN BLOC-1 complex (ortholog); early endosome membrane (ortholog); exocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol 4-kinase type 2-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,890,654 - 10,921,898 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,720,094 - 10,930,286 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,075,666 - 11,106,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,215,885 - 11,247,161 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,215,161 - 11,247,156 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,901,119 - 10,932,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,937,530 - 10,968,779 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,077,372 - 11,108,650 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PI4K2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,890,654 - 10,921,898 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,720,094 - 10,930,286 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,075,666 - 11,106,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,215,885 - 11,247,161 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,215,161 - 11,247,156 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,901,119 - 10,932,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,937,530 - 10,968,779 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,077,372 - 11,108,650 (+)NCBIUU_Cfam_GSD_1.0
PI4K2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,640,671 - 97,676,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,640,671 - 97,676,434 (+)EnsemblGRCh38hg38GRCh38
GRCh371099,400,428 - 99,436,191 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,390,433 - 99,426,177 (+)NCBINCBI36Build 36hg18NCBI36
Celera1093,137,746 - 93,173,496 (+)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1093,026,125 - 93,061,814 (+)NCBIHuRef
CHM1_11099,682,196 - 99,717,943 (+)NCBICHM1_1
T2T-CHM13v2.01098,520,873 - 98,556,635 (+)NCBIT2T-CHM13v2.0
Pi4k2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,078,590 - 42,110,657 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,078,909 - 42,110,526 (+)EnsemblGRCm39 Ensembl
GRCm381942,090,148 - 42,122,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,090,470 - 42,122,087 (+)EnsemblGRCm38mm10GRCm38
MGSCv371942,164,925 - 42,196,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,143,746 - 42,175,529 (+)NCBIMGSCv36mm8
Celera1942,894,069 - 42,920,028 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.74NCBI
Pi4k2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,850,440 - 250,878,399 (+)NCBIGRCr8
mRatBN7.21240,902,804 - 240,929,234 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,902,855 - 240,929,337 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1249,048,304 - 249,074,558 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,745,447 - 255,771,702 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,398,475 - 248,424,733 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,337,594 - 261,362,509 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,337,594 - 261,362,509 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,790,066 - 268,814,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41248,736,384 - 248,760,679 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11248,995,210 - 249,019,506 (-)NCBI
Celera1236,737,388 - 236,761,684 (+)NCBICelera
Cytogenetic Map1q54NCBI
Pi4k2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,730,071 - 3,756,880 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,729,947 - 3,761,703 (+)NCBIChiLan1.0ChiLan1.0
PI4K2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,552,631 - 109,584,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,557,944 - 109,590,610 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,261,096 - 94,293,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,753,860 - 97,788,054 (+)NCBIpanpan1.1PanPan1.1panPan2
Pi4k2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,015,706 - 36,044,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,053,826 - 2,083,633 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,054,672 - 2,083,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PI4K2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14109,008,161 - 109,043,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114109,008,143 - 109,043,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,512,193 - 118,545,324 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PI4K2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,805,197 - 90,840,047 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,805,086 - 90,834,730 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,701,959 - 51,739,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pi4k2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,271,546 - 9,308,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,271,519 - 9,309,843 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PI4K2A
289 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 16 1 6 12 10
Low 5 5 6 6 5 6 6 8 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00845053150   ⟹   ENSCAFP00845041733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2811,215,161 - 11,247,156 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845053176   ⟹   ENSCAFP00845041749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2811,215,161 - 11,245,976 (+)Ensembl
RefSeq Acc Id: XM_038440204   ⟹   XP_038296132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02811,215,885 - 11,247,161 (+)NCBI
RefSeq Acc Id: XM_038514818   ⟹   XP_038370746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12810,901,119 - 10,932,268 (+)NCBI
RefSeq Acc Id: XM_038578448   ⟹   XP_038434376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02811,077,372 - 11,108,650 (+)NCBI
RefSeq Acc Id: XM_038642614   ⟹   XP_038498542
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02810,937,530 - 10,968,779 (+)NCBI
RefSeq Acc Id: XM_543953   ⟹   XP_543953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12810,890,654 - 10,921,898 (+)NCBI
Dog10K_Boxer_Tasha2811,075,666 - 11,106,919 (+)NCBI
Sequence:
RefSeq Acc Id: XP_543953   ⟸   XM_543953
- UniProtKB: A0A8P0NUC6 (UniProtKB/TrEMBL),   A0A8C0P7X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038370746   ⟸   XM_038514818
RefSeq Acc Id: XP_038498542   ⟸   XM_038642614
RefSeq Acc Id: XP_038296132   ⟸   XM_038440204
- UniProtKB: A0A8I3Q571 (UniProtKB/TrEMBL),   A0A8C0P7X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434376   ⟸   XM_038578448
- UniProtKB: A0A8C0P7X3 (UniProtKB/TrEMBL),   A0A8P0NUC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041749   ⟸   ENSCAFT00845053176
RefSeq Acc Id: ENSCAFP00845041733   ⟸   ENSCAFT00845053150
Protein Domains
PI3K/PI4K catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009222 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022175 UniProtKB/TrEMBL
  ENSCAFG00845029994 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014664.5 UniProtKB/TrEMBL
  ENSCAFT00000091460.2 UniProtKB/TrEMBL
  ENSCAFT00030040769.1 UniProtKB/TrEMBL
  ENSCAFT00845053150 ENTREZGENE
  ENSCAFT00845053150.1 UniProtKB/TrEMBL
  ENSCAFT00845053176.1 UniProtKB/TrEMBL
InterPro Lsb6/PI4K2 UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/TrEMBL
KEGG Report cfa:486824 UniProtKB/TrEMBL
NCBI Gene PI4K2A ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL 4-KINASE TYPE 2-ALPHA UniProtKB/TrEMBL
  PTHR12865 UniProtKB/TrEMBL
Pfam PI3_PI4_kinase UniProtKB/TrEMBL
PROSITE PI3_4_KINASE_3 UniProtKB/TrEMBL
Superfamily-SCOP ADP-ribosylation UniProtKB/TrEMBL
UniProt A0A8C0P7X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q571 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q879_CANLF UniProtKB/TrEMBL
  A0A8P0NBC7_CANLF UniProtKB/TrEMBL
  A0A8P0NUC6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110529 ENTREZGENE