CCNE1 (cyclin E1) - Rat Genome Database

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Gene: CCNE1 (cyclin E1) Canis lupus familiaris
Analyze
Symbol: CCNE1
Name: cyclin E1
RGD ID: 12210477
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); antral ovarian follicle growth (ortholog); cellular response to nutrient (ortholog); PARTICIPATES IN G1/S transition pathway; mTOR signaling pathway; ASSOCIATED WITH Bowen's Disease (ortholog); breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G1/S-specific cyclin-E1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,688,622 - 121,697,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,688,796 - 121,697,649 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,057,141 - 121,067,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,317,344 - 122,328,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,317,344 - 122,327,556 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11121,897,115 - 121,908,170 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,503,639 - 121,514,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,568,738 - 122,579,545 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,688,622 - 121,697,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,688,796 - 121,697,649 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,057,141 - 121,067,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01122,317,344 - 122,328,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1122,317,344 - 122,327,556 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11121,897,115 - 121,908,170 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,503,639 - 121,514,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,568,738 - 122,579,545 (-)NCBIUU_Cfam_GSD_1.0
CCNE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381929,811,991 - 29,824,312 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1929,811,991 - 29,824,312 (+)EnsemblGRCh38hg38GRCh38
GRCh371930,302,898 - 30,315,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361934,994,741 - 35,007,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 341934,995,400 - 35,007,058NCBI
Celera1927,001,121 - 27,013,439 (+)NCBICelera
Cytogenetic Map19q12NCBI
HuRef1926,814,506 - 26,826,846 (+)NCBIHuRef
CHM1_11930,304,072 - 30,316,380 (+)NCBICHM1_1
T2T-CHM13v2.01932,337,722 - 32,350,035 (+)NCBIT2T-CHM13v2.0
Ccne1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39737,797,409 - 37,806,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl737,797,409 - 37,806,959 (-)EnsemblGRCm39 Ensembl
GRCm38738,097,984 - 38,107,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl738,097,984 - 38,107,534 (-)EnsemblGRCm38mm10GRCm38
MGSCv37738,883,003 - 38,892,509 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36737,806,744 - 37,816,090 (-)NCBIMGSCv36mm8
Celera733,255,165 - 33,271,131 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map725.35NCBI
Ccne1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,918,672 - 99,927,986 (-)NCBIGRCr8
mRatBN7.2190,781,947 - 90,791,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl190,781,949 - 90,791,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx196,177,587 - 96,186,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01104,643,512 - 104,652,745 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0197,935,949 - 97,945,186 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0194,485,830 - 94,495,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl194,485,832 - 94,494,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0195,575,136 - 95,584,387 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4190,568,189 - 90,577,426 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1190,646,304 - 90,655,502 (-)NCBI
Celera185,114,968 - 85,124,206 (-)NCBICelera
RH 3.4 Map1885.7RGD
Cytogenetic Map1q21NCBI
Ccne1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554687,803,346 - 7,814,872 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554687,803,610 - 7,814,872 (-)NCBIChiLan1.0ChiLan1.0
CCNE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22035,791,482 - 35,803,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11937,788,541 - 37,800,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01926,739,285 - 26,751,630 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11935,497,576 - 35,509,289 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1935,496,700 - 35,510,295 (+)Ensemblpanpan1.1panPan2
Ccne1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093496,098,056 - 6,108,393 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365705,536,672 - 5,548,008 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365705,536,817 - 5,547,880 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl639,919,624 - 39,933,363 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1639,919,541 - 39,933,224 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2635,242,127 - 35,255,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1624,879,923 - 24,888,985 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660732,422,215 - 2,433,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccne1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247944,957,178 - 4,967,140 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247944,957,156 - 4,967,058 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCNE1
125 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 1
Low 5 5 20 5 6 5 6 1 11 8 10 6
Below cutoff 1 1 1 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022426492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038529535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY514695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000012181   ⟹   ENSCAFP00000011293
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1121,688,796 - 121,697,649 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089096   ⟹   ENSCAFP00000059494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1121,688,796 - 121,697,649 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001930   ⟹   ENSCAFP00845001515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1122,317,344 - 122,327,556 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001962   ⟹   ENSCAFP00845001541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1122,317,344 - 122,327,556 (-)Ensembl
RefSeq Acc Id: XM_038453775   ⟹   XP_038309703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1121,057,141 - 121,067,963 (-)NCBI
RefSeq Acc Id: XM_038453777   ⟹   XP_038309705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1121,057,141 - 121,066,750 (-)NCBI
RefSeq Acc Id: XM_038468725   ⟹   XP_038324653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11121,897,115 - 121,908,170 (-)NCBI
RefSeq Acc Id: XM_038468726   ⟹   XP_038324654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11121,897,115 - 121,906,988 (-)NCBI
RefSeq Acc Id: XM_038529534   ⟹   XP_038385462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01122,568,738 - 122,579,545 (-)NCBI
RefSeq Acc Id: XM_038529535   ⟹   XP_038385463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01122,568,738 - 122,578,338 (-)NCBI
RefSeq Acc Id: XM_038593778   ⟹   XP_038449706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01121,503,639 - 121,514,505 (-)NCBI
RefSeq Acc Id: XM_038593779   ⟹   XP_038449707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01121,503,639 - 121,513,284 (-)NCBI
RefSeq Acc Id: XM_038657660   ⟹   XP_038513588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01122,317,344 - 122,328,414 (-)NCBI
RefSeq Acc Id: XM_038657661   ⟹   XP_038513589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01122,317,344 - 122,327,229 (-)NCBI
RefSeq Acc Id: ENSCAFP00000059494   ⟸   ENSCAFT00000089096
RefSeq Acc Id: ENSCAFP00000011293   ⟸   ENSCAFT00000012181
RefSeq Acc Id: XP_038324653   ⟸   XM_038468725
RefSeq Acc Id: XP_038324654   ⟸   XM_038468726
RefSeq Acc Id: XP_038449706   ⟸   XM_038593778
RefSeq Acc Id: XP_038449707   ⟸   XM_038593779
RefSeq Acc Id: XP_038513588   ⟸   XM_038657660
- UniProtKB: A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL),   A0A8C0L6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038513589   ⟸   XM_038657661
- UniProtKB: A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL),   A0A8C0L6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038309703   ⟸   XM_038453775
- UniProtKB: A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL),   A0A8C0L6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038309705   ⟸   XM_038453777
- UniProtKB: A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL),   A0A8C0L6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385462   ⟸   XM_038529534
- UniProtKB: A0A8C0L6A7 (UniProtKB/TrEMBL),   A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385463   ⟸   XM_038529535
- UniProtKB: A0A8C0L6A7 (UniProtKB/TrEMBL),   A0A8C0Q240 (UniProtKB/TrEMBL),   A0A8I3MDI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845001541   ⟸   ENSCAFT00845001962
RefSeq Acc Id: ENSCAFP00845001515   ⟸   ENSCAFT00845001930
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007614 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000146 UniProtKB/TrEMBL
  ENSCAFG00040004252 UniProtKB/TrEMBL
  ENSCAFG00845001129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012181.5 UniProtKB/TrEMBL
  ENSCAFT00000089096.2 UniProtKB/TrEMBL
  ENSCAFT00030000209.1 UniProtKB/TrEMBL
  ENSCAFT00030000262.1 UniProtKB/TrEMBL
  ENSCAFT00040008189.1 UniProtKB/TrEMBL
  ENSCAFT00040008336.1 UniProtKB/TrEMBL
  ENSCAFT00845001930 ENTREZGENE
  ENSCAFT00845001930.1 UniProtKB/TrEMBL
  ENSCAFT00845001962.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
NCBI Gene CCNE1 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
  PTHR10177:SF71 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A8C0L6A7 ENTREZGENE
  A0A8C0LX15_CANLF UniProtKB/TrEMBL
  A0A8C0Q240 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q8D3_CANLF UniProtKB/TrEMBL
  A0A8I3MDI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MJN6_CANLF UniProtKB/TrEMBL
  Q6JDM4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38898 ENTREZGENE