CBLN2 (cerebellin 2 precursor) - Rat Genome Database

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Gene: CBLN2 (cerebellin 2 precursor) Canis lupus familiaris
Analyze
Symbol: CBLN2
Name: cerebellin 2 precursor
RGD ID: 12210471
Description: INVOLVED IN maintenance of synapse structure (ortholog); positive regulation of synapse assembly (ortholog); regulation of presynapse assembly (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN extracellular space (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cerebellin-2; LOW QUALITY PROTEIN: cerebellin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116,378,153 - 6,384,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl16,376,777 - 6,382,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha17,388,688 - 7,396,695 (+)NCBI
ROS_Cfam_1.016,193,042 - 6,201,050 (+)NCBI
UMICH_Zoey_3.116,230,689 - 6,238,685 (+)NCBI
UNSW_CanFamBas_1.016,185,390 - 6,193,399 (+)NCBI
UU_Cfam_GSD_1.016,403,350 - 6,411,358 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CBLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.116,378,153 - 6,384,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl16,376,777 - 6,382,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha17,388,688 - 7,396,695 (+)NCBI
ROS_Cfam_1.016,193,042 - 6,201,050 (+)NCBI
UMICH_Zoey_3.116,230,689 - 6,238,685 (+)NCBI
UNSW_CanFamBas_1.016,185,390 - 6,193,399 (+)NCBI
UU_Cfam_GSD_1.016,403,350 - 6,411,358 (+)NCBI
CBLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1872,536,680 - 72,638,521 (-)EnsemblGRCh38hg38GRCh38
GRCh381872,533,720 - 72,638,485 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371870,203,916 - 70,211,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361868,354,895 - 68,362,542 (-)NCBINCBI36hg18NCBI36
Celera1867,055,763 - 67,063,568 (-)NCBI
Cytogenetic Map18q22.3NCBI
HuRef1866,922,467 - 66,930,272 (-)NCBIHuRef
CHM1_11870,199,133 - 70,206,942 (-)NCBICHM1_1
Cbln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391886,727,226 - 86,736,410 (+)NCBIGRCm39mm39
GRCm39 Ensembl1886,729,235 - 86,736,408 (+)Ensembl
GRCm381886,711,061 - 86,718,283 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1886,711,110 - 86,718,283 (+)EnsemblGRCm38mm10GRCm38
MGSCv371886,882,440 - 86,887,675 (+)NCBIGRCm37mm9NCBIm37
MGSCv361886,847,241 - 86,852,476 (+)NCBImm8
Celera1887,741,193 - 87,746,432 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1858.63NCBI
Cbln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21879,940,412 - 79,948,766 (+)NCBI
Rnor_6.0 Ensembl1883,777,665 - 83,782,930 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01883,775,568 - 83,783,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01882,836,552 - 82,844,974 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41883,306,945 - 83,313,398 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11883,380,394 - 83,386,848 (+)NCBI
Celera1878,526,129 - 78,532,582 (+)NCBICelera
Cytogenetic Map18q13NCBI
Cbln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540256,051,496 - 56,062,190 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540256,052,340 - 56,062,190 (-)NCBIChiLan1.0ChiLan1.0
CBLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11869,196,248 - 69,201,563 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01865,906,154 - 66,010,195 (-)NCBIMhudiblu_PPA_v0panPan3
Cbln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494420,244,240 - 20,254,105 (+)NCBI
SpeTri2.0NW_004936756567,906 - 576,276 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1150,973,622 - 150,980,757 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11150,966,003 - 150,980,757 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21167,191,334 - 167,198,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBLN2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,270,551 - 7,280,233 (+)NCBI
ChlSab1.1 Ensembl187,274,754 - 7,278,714 (+)Ensembl
Cbln2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248068,371,966 - 8,381,908 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 8
Low 4 11 6 4 5
Below cutoff 1 5 9 6 6 6 6 8 5 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000000050   ⟹   ENSCAFP00000000046
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl16,376,777 - 6,382,024 (+)Ensembl
RefSeq Acc Id: XM_038465198   ⟹   XP_038321126
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.116,230,689 - 6,238,685 (+)NCBI
RefSeq Acc Id: XM_038525801   ⟹   XP_038381729
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.016,403,350 - 6,411,358 (+)NCBI
RefSeq Acc Id: XM_038590101   ⟹   XP_038446029
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.016,185,390 - 6,193,399 (+)NCBI
RefSeq Acc Id: XM_038653932   ⟹   XP_038509860
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.016,193,042 - 6,201,050 (+)NCBI
RefSeq Acc Id: XM_541056   ⟹   XP_541056
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.116,378,153 - 6,384,559 (+)NCBI
Dog10K_Boxer_Tasha17,388,688 - 7,396,695 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038321126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038381729 (Get FASTA)   NCBI Sequence Viewer  
  XP_038446029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509860 (Get FASTA)   NCBI Sequence Viewer  
  XP_541056 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_541056   ⟸   XM_541056
- Sequence:
RefSeq Acc Id: ENSCAFP00000000046   ⟸   ENSCAFT00000000050
RefSeq Acc Id: XP_038321126   ⟸   XM_038465198
RefSeq Acc Id: XP_038446029   ⟸   XM_038590101
RefSeq Acc Id: XP_038509860   ⟸   XM_038653932
RefSeq Acc Id: XP_038381729   ⟸   XM_038525801
Protein Domains
C1q

Promoters
RGD ID:13681943
Promoter ID:EPDNEW_C11
Type:multiple initiation site
Name:CBLN2_1
Description:cerebellin 2 precursor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.116,378,267 - 6,378,327EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000032 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000000046 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000050 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene CBLN2 ENTREZGENE
Pfam C1q UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt F1PJJ9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38762 ENTREZGENE