NSG1 (neuronal vesicle trafficking associated 1) - Rat Genome Database

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Gene: NSG1 (neuronal vesicle trafficking associated 1) Canis lupus familiaris
Analyze
Symbol: NSG1
Name: neuronal vesicle trafficking associated 1
RGD ID: 12209713
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); apoptotic process (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); FOUND IN dendrite (ortholog); early endosome (ortholog); early endosome membrane (ortholog); INTERACTS WITH masitinib
Type: protein-coding
RefSeq Status: MODEL
Also known as: D4S234E; LOC479096; neuron specific gene family member 1; neuron-specific protein family member 1; neuronal vesicle trafficking-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,805,646 - 69,831,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,805,592 - 69,831,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBI
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBI
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBI
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBI
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
masitinib  (EXP)

References

Genomics

Comparative Map Data
NSG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,805,646 - 69,831,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,805,592 - 69,831,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBI
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBI
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBI
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBI
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBI
NSG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl44,348,140 - 4,419,058 (+)EnsemblGRCh38hg38GRCh38
GRCh3844,386,532 - 4,419,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3744,388,259 - 4,420,785 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,438,884 - 4,471,686 (+)NCBINCBI36hg18NCBI36
Build 3444,506,823 - 4,538,856NCBI
Celera44,285,777 - 4,318,783 (+)NCBI
Cytogenetic Map4p16.3NCBI
HuRef44,323,846 - 4,356,408 (+)NCBIHuRef
CHM1_144,385,947 - 4,418,741 (+)NCBICHM1_1
Nsg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,294,537 - 38,317,087 (-)NCBIGRCm39mm39
GRCm39 Ensembl538,294,536 - 38,317,251 (-)Ensembl
GRCm38538,137,193 - 38,159,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,137,192 - 38,159,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,528,432 - 38,550,706 (-)NCBIGRCm37mm9NCBIm37
MGSCv36538,425,442 - 38,447,716 (-)NCBImm8
Celera535,587,097 - 35,609,344 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.21NCBI
Nsg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21472,648,771 - 72,670,521 (+)NCBI
Rnor_6.0 Ensembl1477,380,262 - 77,401,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01477,380,264 - 77,402,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01477,362,126 - 77,383,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,931,947 - 77,953,690 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11477,934,337 - 77,956,080 (+)NCBI
Celera1471,598,968 - 71,620,711 (+)NCBICelera
Cytogenetic Map14q21NCBI
Nsg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,273,810 - 5,295,710 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555145,273,810 - 5,294,925 (-)NCBIChiLan1.0ChiLan1.0
NSG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.144,467,232 - 4,496,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,467,234 - 4,496,088 (+)Ensemblpanpan1.1panPan2
Nsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,323,364 - 63,344,659 (+)NCBI
SpeTri2.0NW_00493647717,025,057 - 17,046,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,000,057 - 6,024,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,000,054 - 6,023,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NSG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,544,037 - 40,576,479 (+)NCBI
ChlSab1.1 Ensembl2740,544,701 - 40,579,108 (+)Ensembl
Vero_WHO_p1.0NW_02366604787,345,154 - 87,377,591 (+)NCBI
Nsg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,507,068 - 21,529,057 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 16 6 12 10 6
Low 6 6 6 6 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022417192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000024854   ⟹   ENSCAFP00000023059
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl369,805,592 - 69,830,540 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000071434   ⟹   ENSCAFP00000054574
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl369,805,592 - 69,831,194 (+)Ensembl
RefSeq Acc Id: XM_022417192   ⟹   XP_022272900
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1369,805,646 - 69,831,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472425   ⟹   XP_038328353
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBI
RefSeq Acc Id: XM_038472426   ⟹   XP_038328354
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBI
RefSeq Acc Id: XM_038480416   ⟹   XP_038336344
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBI
RefSeq Acc Id: XM_038480420   ⟹   XP_038336348
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBI
RefSeq Acc Id: XM_038533400   ⟹   XP_038389328
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBI
RefSeq Acc Id: XM_038533401   ⟹   XP_038389329
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBI
RefSeq Acc Id: XM_038597706   ⟹   XP_038453634
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBI
RefSeq Acc Id: XM_038597707   ⟹   XP_038453635
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBI
RefSeq Acc Id: XM_038661900   ⟹   XP_038517828
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBI
RefSeq Acc Id: XM_038661901   ⟹   XP_038517829
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBI
RefSeq Acc Id: XM_536243   ⟹   XP_536243
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1369,805,646 - 69,831,200 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_536243   ⟸   XM_536243
- Sequence:
RefSeq Acc Id: XP_022272900   ⟸   XM_022417192
- Sequence:
RefSeq Acc Id: ENSCAFP00000023059   ⟸   ENSCAFT00000024854
RefSeq Acc Id: ENSCAFP00000054574   ⟸   ENSCAFT00000071434
RefSeq Acc Id: XP_038328353   ⟸   XM_038472425
RefSeq Acc Id: XP_038328354   ⟸   XM_038472426
RefSeq Acc Id: XP_038453634   ⟸   XM_038597706
RefSeq Acc Id: XP_038453635   ⟸   XM_038597707
RefSeq Acc Id: XP_038517828   ⟸   XM_038661900
RefSeq Acc Id: XP_038517829   ⟸   XM_038661901
RefSeq Acc Id: XP_038336344   ⟸   XM_038480416
RefSeq Acc Id: XP_038336348   ⟸   XM_038480420
RefSeq Acc Id: XP_038389328   ⟸   XM_038533400
RefSeq Acc Id: XP_038389329   ⟸   XM_038533401


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015693 Ensembl, ENTREZGENE
NCBI Gene LOC479096 ENTREZGENE
VGNC ID VGNC:43985 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-04 NSG1  neuronal vesicle trafficking associated 1  LOC479096  neuron-specific protein family member 1  Symbol and/or name change 5135510 APPROVED