NDC80 (NDC80 kinetochore complex component) - Rat Genome Database

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Gene: NDC80 (NDC80 kinetochore complex component) Canis lupus familiaris
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Symbol: NDC80
Name: NDC80 kinetochore complex component
RGD ID: 12207036
Description: ENCODES a protein that exhibits cyclin binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); centrosome duplication (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: kinetochore protein NDC80 homolog; NDC80 homolog, kinetochore complex component; NDC80 kinetochore complex component homolog; NDC80, kinetochore complex component
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,268,218 - 69,317,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,268,242 - 69,317,072 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha768,723,201 - 68,772,189 (+)NCBI
ROS_Cfam_1.0769,329,940 - 69,378,870 (+)NCBI
UMICH_Zoey_3.1769,012,589 - 69,061,471 (+)NCBI
UNSW_CanFamBas_1.0769,032,710 - 69,081,627 (+)NCBI
UU_Cfam_GSD_1.0769,329,927 - 69,378,829 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
NDC80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,268,218 - 69,317,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,268,242 - 69,317,072 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha768,723,201 - 68,772,189 (+)NCBI
ROS_Cfam_1.0769,329,940 - 69,378,870 (+)NCBI
UMICH_Zoey_3.1769,012,589 - 69,061,471 (+)NCBI
UNSW_CanFamBas_1.0769,032,710 - 69,081,627 (+)NCBI
UU_Cfam_GSD_1.0769,329,927 - 69,378,829 (+)NCBI
NDC80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl182,571,557 - 2,616,635 (+)EnsemblGRCh38hg38GRCh38
GRCh38182,571,557 - 2,616,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37182,571,556 - 2,616,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36182,561,605 - 2,606,629 (+)NCBINCBI36hg18NCBI36
Build 34182,561,604 - 2,606,626NCBI
Celera182,446,814 - 2,491,757 (+)NCBI
Cytogenetic Map18p11.32NCBI
HuRef182,532,999 - 2,577,942 (+)NCBIHuRef
CHM1_1182,570,883 - 2,615,800 (+)NCBICHM1_1
Ndc80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,803,095 - 71,833,852 (-)NCBIGRCm39mm39
GRCm39 Ensembl1771,803,095 - 71,833,852 (-)Ensembl
GRCm381771,496,100 - 71,526,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,496,100 - 71,526,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371771,845,440 - 71,876,197 (-)NCBIGRCm37mm9NCBIm37
MGSCv361771,400,962 - 71,431,714 (-)NCBImm8
Celera1775,767,449 - 75,800,160 (-)NCBICelera
Cytogenetic Map17E1.3NCBI
Ndc80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29111,407,191 - 111,440,921 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl9111,407,191 - 111,440,924 (-)Ensembl
Rnor_6.09119,837,857 - 119,871,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,839,016 - 119,871,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09119,291,271 - 119,324,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,702,935 - 110,718,894 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19110,912,517 - 110,945,708 (-)NCBI
Celera9108,536,354 - 108,552,152 (-)NCBICelera
Cytogenetic Map9q38NCBI
Ndc80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554027,691,937 - 7,729,690 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554027,692,009 - 7,728,876 (-)NCBIChiLan1.0ChiLan1.0
NDC80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11813,972,637 - 14,018,261 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1813,972,637 - 14,018,261 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01811,666,099 - 11,711,456 (-)NCBIMhudiblu_PPA_v0panPan3
Ndc80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494465,630,900 - 65,669,747 (+)NCBI
SpeTri2.0NW_0049366721,872,205 - 1,910,956 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDC80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,998,698 - 104,055,762 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16104,000,794 - 104,055,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2697,024,076 - 97,061,162 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDC80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11861,835,027 - 61,882,660 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1861,835,064 - 61,881,627 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605036,694,925 - 36,740,902 (+)NCBIVero_WHO_p1.0
Ndc80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477012,937,887 - 12,974,352 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 5 5 6 6 10 5
Below cutoff 5 17 6 6 5 12 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022421541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000029233   ⟹   ENSCAFP00000027183
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl769,268,242 - 69,317,072 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000065585   ⟹   ENSCAFP00000052590
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl769,268,242 - 69,312,293 (+)Ensembl
RefSeq Acc Id: XM_022421541   ⟹   XP_022277249
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1769,268,218 - 69,317,126 (+)NCBI
Dog10K_Boxer_Tasha768,723,201 - 68,772,189 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038482269   ⟹   XP_038338197
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1769,012,589 - 69,061,471 (+)NCBI
RefSeq Acc Id: XM_038482270   ⟹   XP_038338198
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1769,012,589 - 69,061,471 (+)NCBI
RefSeq Acc Id: XM_038482271   ⟹   XP_038338199
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1769,012,589 - 69,058,169 (+)NCBI
RefSeq Acc Id: XM_038543704   ⟹   XP_038399632
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0769,329,927 - 69,378,829 (+)NCBI
RefSeq Acc Id: XM_038543705   ⟹   XP_038399633
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0769,329,927 - 69,378,829 (+)NCBI
RefSeq Acc Id: XM_038543706   ⟹   XP_038399634
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0769,329,927 - 69,375,526 (+)NCBI
RefSeq Acc Id: XM_038576700   ⟹   XP_038432628
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha768,723,201 - 68,768,883 (+)NCBI
RefSeq Acc Id: XM_038607830   ⟹   XP_038463758
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0769,032,710 - 69,081,627 (+)NCBI
RefSeq Acc Id: XM_038607831   ⟹   XP_038463759
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0769,032,710 - 69,081,627 (+)NCBI
RefSeq Acc Id: XM_038607832   ⟹   XP_038463760
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0769,032,710 - 69,078,325 (+)NCBI
RefSeq Acc Id: XM_038672513   ⟹   XP_038528441
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0769,329,940 - 69,378,870 (+)NCBI
RefSeq Acc Id: XM_038672514   ⟹   XP_038528442
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0769,329,940 - 69,378,870 (+)NCBI
RefSeq Acc Id: XM_038672515   ⟹   XP_038528443
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0769,329,940 - 69,375,568 (+)NCBI
RefSeq Acc Id: XM_537313   ⟹   XP_537313
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1769,268,218 - 69,317,126 (+)NCBI
Dog10K_Boxer_Tasha768,723,201 - 68,772,189 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_537313   ⟸   XM_537313
- Peptide Label: isoform X1
- UniProtKB: E2RIY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277249   ⟸   XM_022421541
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000027183   ⟸   ENSCAFT00000029233
RefSeq Acc Id: ENSCAFP00000052590   ⟸   ENSCAFT00000065585
RefSeq Acc Id: XP_038338197   ⟸   XM_038482269
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338198   ⟸   XM_038482270
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038338199   ⟸   XM_038482271
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038463758   ⟸   XM_038607830
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463759   ⟸   XM_038607831
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038463760   ⟸   XM_038607832
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038528441   ⟸   XM_038672513
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038528442   ⟸   XM_038672514
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038528443   ⟸   XM_038672515
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038432628   ⟸   XM_038576700
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038399632   ⟸   XM_038543704
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038399633   ⟸   XM_038543705
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038399634   ⟸   XM_038543706
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018395 Ensembl
NCBI Gene NDC80 ENTREZGENE
UniProt E2RIY7 ENTREZGENE
VGNC ID VGNC:43670 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 NDC80  NDC80 kinetochore complex component    NDC80, kinetochore complex component  Symbol and/or name change 5135510 APPROVED