MEDAG (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 25 | 9,182,441 - 9,201,235 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 25 | 9,183,443 - 9,200,051 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 25 | 9,224,982 - 9,242,610 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 25 | 9,287,047 - 9,305,980 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 25 | 9,287,076 - 9,304,969 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 25 | 9,185,976 - 9,203,593 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 25 | 9,194,040 - 9,211,661 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 25 | 9,236,109 - 9,253,732 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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MEDAG (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 30,906,271 - 30,925,572 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 30,906,271 - 30,925,572 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 31,480,408 - 31,499,709 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 30,378,328 - 30,397,678 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 13 | 12,546,863 - 12,566,248 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q12.3 | NCBI | | | | | HuRef | 13 | 12,291,191 - 12,310,577 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 31,447,426 - 31,466,813 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 30,128,196 - 30,147,488 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Medag (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 149,335,214 - 149,355,188 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 149,335,214 - 149,355,188 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 149,367,641 - 149,431,723 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 149,411,749 - 149,431,723 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 150,214,381 - 150,234,278 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 149,680,185 - 149,700,082 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 147,412,123 - 147,432,091 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | G3 | NCBI | | | | | cM Map | 5 | 89.18 | NCBI | | | | |
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Medag (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 12 | 10,649,526 - 10,670,913 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 12 | 5,613,191 - 5,634,583 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 12 | 5,613,208 - 5,634,767 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 12 | 6,279,708 - 6,300,994 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 12 | 6,903,180 - 6,924,463 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 12 | 5,930,909 - 5,952,145 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 12 | 6,711,745 - 6,730,959 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 12 | 6,711,747 - 6,740,714 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 12 | 8,808,629 - 8,828,437 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 12 | 6,104,957 - 6,126,628 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 12 | 6,104,981 - 6,126,628 (-) | NCBI | | | | | Celera | 12 | 7,371,986 - 7,393,743 (-) | NCBI | | Celera | | | Cytogenetic Map | 12 | p11 | NCBI | | | | |
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Medag (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955431 | 14,916,369 - 14,937,385 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955431 | 14,918,560 - 14,937,385 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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MEDAG (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 30,487,042 - 30,506,616 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 21,593,822 - 21,613,941 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 12,180,622 - 12,200,123 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 30,614,989 - 30,634,048 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 30,614,989 - 30,632,912 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Medag (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404945 | 170,298,447 - 170,317,740 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936472 | 25,634,349 - 25,653,823 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936472 | 25,634,444 - 25,653,708 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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MEDAG (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 11 | 7,545,494 - 7,562,737 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 7,545,400 - 7,562,741 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 7,396,838 - 7,414,378 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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MEDAG (Chlorocebus sabaeus - green monkey) |
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Medag (Heterocephalus glaber - naked mole-rat) |
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