COL13A1 (collagen type XIII alpha 1 chain) - Rat Genome Database

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Gene: COL13A1 (collagen type XIII alpha 1 chain) Canis lupus familiaris
Analyze
Symbol: COL13A1
Name: collagen type XIII alpha 1 chain
RGD ID: 12206267
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 19 (ortholog); genetic disease (ortholog); FOUND IN cell-cell junction (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collagen alpha-1(XIII) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,838,163 - 20,987,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,971,110 - 21,119,964 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0421,113,705 - 21,262,719 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1421,012,409 - 21,161,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,216,918 - 21,365,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,561,379 - 21,710,027 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
COL13A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,838,163 - 20,987,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,971,110 - 21,119,964 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0421,113,705 - 21,262,719 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1421,012,409 - 21,161,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,216,918 - 21,365,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,561,379 - 21,710,027 (+)NCBIUU_Cfam_GSD_1.0
COL13A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,801,906 - 69,959,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,801,880 - 69,964,275 (+)EnsemblGRCh38hg38GRCh38
GRCh371071,561,662 - 71,718,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,231,650 - 71,388,909 (+)NCBINCBI36Build 36hg18NCBI36
Celera1064,838,564 - 64,996,131 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,553,122 - 65,710,673 (+)NCBIHuRef
CHM1_11071,843,392 - 72,000,665 (+)NCBICHM1_1
T2T-CHM13v2.01070,670,103 - 70,827,646 (+)NCBIT2T-CHM13v2.0
Col13a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,674,013 - 61,814,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,674,015 - 61,814,887 (-)EnsemblGRCm39 Ensembl
GRCm381061,838,234 - 61,979,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1061,838,236 - 61,979,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv371061,301,246 - 61,441,856 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,233,855 - 61,374,465 (-)NCBIMGSCv36mm8
Celera1062,940,611 - 63,081,159 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.29NCBI
Col13a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,326,744 - 30,466,800 (-)NCBIGRCr8
mRatBN7.22029,783,965 - 29,924,116 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2030,794,932 - 30,934,985 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,185,849 - 30,325,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02030,928,630 - 31,068,686 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,456,502 - 31,598,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,456,852 - 31,598,118 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,254,962 - 33,395,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,208,654 - 29,348,751 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2031,209,120 - 31,348,066 (-)NCBICelera
Cytogenetic Map20q11NCBI
Col13a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,256,636 - 21,392,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543721,256,410 - 21,393,385 (-)NCBIChiLan1.0ChiLan1.0
LOC100973165
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2882,027,140 - 82,114,312 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11082,032,461 - 82,119,416 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01066,277,302 - 66,434,410 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,806,841 - 68,964,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,807,425 - 68,963,642 (+)Ensemblpanpan1.1panPan2
Col13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,100,636 - 60,239,816 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,588,809 - 8,732,002 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,588,568 - 8,643,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL13A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,787,303 - 72,953,095 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,786,780 - 72,953,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,706,033 - 78,871,075 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL13A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,342,482 - 61,500,072 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,344,481 - 61,499,539 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,080,101 - 22,237,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col13a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247544,017,900 - 4,162,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247544,016,873 - 4,163,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COL13A1
2101 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 5
Low 5 15 6 5 12 5 4
Below cutoff 5 6 6 6 1 6 8 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014112862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000022194   ⟹   ENSCAFP00000020609
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000072096   ⟹   ENSCAFP00000043321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077443   ⟹   ENSCAFP00000058917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079626   ⟹   ENSCAFP00000058911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000082053   ⟹   ENSCAFP00000055132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000093508   ⟹   ENSCAFP00000062400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006942   ⟹   ENSCAFP00845005532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006956   ⟹   ENSCAFP00845005545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006973   ⟹   ENSCAFP00845005561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006988   ⟹   ENSCAFP00845005575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006998   ⟹   ENSCAFP00845005582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845007011   ⟹   ENSCAFP00845005594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)Ensembl
RefSeq Acc Id: XM_014112862   ⟹   XP_013968337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,111 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112863   ⟹   XP_013968338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112864   ⟹   XP_013968339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112866   ⟹   XP_013968341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112867   ⟹   XP_013968342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112868   ⟹   XP_013968343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,115 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417508   ⟹   XP_022273216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,112 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417509   ⟹   XP_022273217
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417510   ⟹   XP_022273218
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,110 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417512   ⟹   XP_022273220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417513   ⟹   XP_022273221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417515   ⟹   XP_022273223
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,163 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,112 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417521   ⟹   XP_022273229
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,674 - 20,987,412 (+)NCBI
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038473121   ⟹   XP_038329049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,410 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473122   ⟹   XP_038329050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,411 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473123   ⟹   XP_038329051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473124   ⟹   XP_038329052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,409 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473125   ⟹   XP_038329053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473126   ⟹   XP_038329054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473127   ⟹   XP_038329055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473128   ⟹   XP_038329056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473129   ⟹   XP_038329057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,411 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473130   ⟹   XP_038329058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473131   ⟹   XP_038329059
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473132   ⟹   XP_038329060
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473133   ⟹   XP_038329061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473134   ⟹   XP_038329062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,892 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473135   ⟹   XP_038329063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,414 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473136   ⟹   XP_038329064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,409 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038473137   ⟹   XP_038329065
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1421,012,412 - 21,161,238 (+)NCBI
RefSeq Acc Id: XM_038490411   ⟹   XP_038346339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038490428   ⟹   XP_038346356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha420,971,593 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038490445   ⟹   XP_038346373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha421,034,150 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038490446   ⟹   XP_038346374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha421,034,150 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038490454   ⟹   XP_038346382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha420,971,110 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038490463   ⟹   XP_038346391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha420,971,113 - 21,119,964 (+)NCBI
RefSeq Acc Id: XM_038534171   ⟹   XP_038390099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,380 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534172   ⟹   XP_038390100
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,381 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534173   ⟹   XP_038390101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534174   ⟹   XP_038390102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,379 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534175   ⟹   XP_038390103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534176   ⟹   XP_038390104
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534177   ⟹   XP_038390105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534178   ⟹   XP_038390106
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534180   ⟹   XP_038390108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,381 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534181   ⟹   XP_038390109
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534182   ⟹   XP_038390110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534183   ⟹   XP_038390111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534184   ⟹   XP_038390112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534185   ⟹   XP_038390113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,862 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534186   ⟹   XP_038390114
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,384 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534187   ⟹   XP_038390115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,379 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038534188   ⟹   XP_038390116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0421,561,382 - 21,710,027 (+)NCBI
RefSeq Acc Id: XM_038598487   ⟹   XP_038454415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,216,919 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598488   ⟹   XP_038454416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,216,920 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598489   ⟹   XP_038454417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598490   ⟹   XP_038454418
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,216,918 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598491   ⟹   XP_038454419
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598492   ⟹   XP_038454420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598493   ⟹   XP_038454421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598494   ⟹   XP_038454422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,216,920 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598495   ⟹   XP_038454423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598496   ⟹   XP_038454424
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598498   ⟹   XP_038454426
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598499   ⟹   XP_038454427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,217,401 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598500   ⟹   XP_038454428
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,279,920 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598501   ⟹   XP_038454429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,279,920 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038598502   ⟹   XP_038454430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0421,216,923 - 21,365,710 (+)NCBI
RefSeq Acc Id: XM_038662790   ⟹   XP_038518718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,706 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662791   ⟹   XP_038518719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,707 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662792   ⟹   XP_038518720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662793   ⟹   XP_038518721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,705 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662794   ⟹   XP_038518722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662795   ⟹   XP_038518723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662796   ⟹   XP_038518724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662797   ⟹   XP_038518725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662798   ⟹   XP_038518726
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,707 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662799   ⟹   XP_038518727
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662800   ⟹   XP_038518728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662801   ⟹   XP_038518729
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662802   ⟹   XP_038518730
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662803   ⟹   XP_038518731
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,114,188 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662804   ⟹   XP_038518732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,710 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662805   ⟹   XP_038518733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,705 - 21,262,719 (+)NCBI
RefSeq Acc Id: XM_038662806   ⟹   XP_038518734
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0421,113,708 - 21,262,719 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013968337 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968338 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968339 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968341 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968342 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968343 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273216 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273217 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273218 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273220 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273221 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273223 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273229 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329053 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329055 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329057 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329058 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329060 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346356 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346391 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390100 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390106 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390110 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390114 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454416 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454417 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454418 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454419 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454420 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454421 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454422 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454423 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454424 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454426 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454427 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454428 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454429 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454430 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518718 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518719 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518720 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518722 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518723 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518724 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518725 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518726 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518727 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518728 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518729 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518730 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518731 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518732 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518733 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000020609.4
  ENSCAFP00000043321.2
  ENSCAFP00000055132.1
  ENSCAFP00000058911.2
  ENSCAFP00000058917.2
  ENSCAFP00000062400.2
  ENSCAFP00000073954.1
  ENSCAFP00030023612.1
  ENSCAFP00030023845.1
  ENSCAFP00030024063.1
  ENSCAFP00030024394.1
  ENSCAFP00030024589.1
  ENSCAFP00030024873.1
  ENSCAFP00030024994.1
  ENSCAFP00030025172.1
  ENSCAFP00030025252.1
  ENSCAFP00040006558.1
  ENSCAFP00040006610.1
  ENSCAFP00040006626.1
  ENSCAFP00040006639.1
  ENSCAFP00040006702.1
  ENSCAFP00040006773.1
  ENSCAFP00040006789.1
  ENSCAFP00040006808.1
  ENSCAFP00040006825.1
  ENSCAFP00845005532
  ENSCAFP00845005532.1
  ENSCAFP00845005545
  ENSCAFP00845005545.1
  ENSCAFP00845005561
  ENSCAFP00845005561.1
  ENSCAFP00845005575
  ENSCAFP00845005575.1
  ENSCAFP00845005582.1
  ENSCAFP00845005594
  ENSCAFP00845005594.1
RefSeq Acc Id: XP_013968337   ⟸   XM_014112862
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013968339   ⟸   XM_014112864
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_013968338   ⟸   XM_014112863
- Peptide Label: isoform X9
- UniProtKB: A0A8C0Q5B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968341   ⟸   XM_014112866
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_013968343   ⟸   XM_014112868
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_013968342   ⟸   XM_014112867
- Peptide Label: isoform X15
- UniProtKB: A0A8I3MS31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273216   ⟸   XM_022417508
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NF56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273223   ⟸   XM_022417515
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_022273218   ⟸   XM_022417510
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_022273221   ⟸   XM_022417513
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_022273217   ⟸   XM_022417509
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_022273220   ⟸   XM_022417512
- Peptide Label: isoform X10
- UniProtKB: A0A8C0NQ50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273229   ⟸   XM_022417521
- Peptide Label: isoform X16
- UniProtKB: A0A8I3MSW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000058917   ⟸   ENSCAFT00000077443
RefSeq Acc Id: ENSCAFP00000062400   ⟸   ENSCAFT00000093508
RefSeq Acc Id: ENSCAFP00000043321   ⟸   ENSCAFT00000072096
RefSeq Acc Id: ENSCAFP00000055132   ⟸   ENSCAFT00000082053
RefSeq Acc Id: ENSCAFP00000058911   ⟸   ENSCAFT00000079626
RefSeq Acc Id: ENSCAFP00000020609   ⟸   ENSCAFT00000022194
RefSeq Acc Id: XP_038329052   ⟸   XM_038473124
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038329064   ⟸   XM_038473136
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038329049   ⟸   XM_038473121
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038329050   ⟸   XM_038473122
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038329057   ⟸   XM_038473129
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038329065   ⟸   XM_038473137
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038329063   ⟸   XM_038473135
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038329051   ⟸   XM_038473123
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038329058   ⟸   XM_038473130
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038329053   ⟸   XM_038473125
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038329056   ⟸   XM_038473128
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329060   ⟸   XM_038473132
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038329059   ⟸   XM_038473131
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038329054   ⟸   XM_038473126
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038329061   ⟸   XM_038473133
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038329062   ⟸   XM_038473134
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038329055   ⟸   XM_038473127
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038454418   ⟸   XM_038598490
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038454415   ⟸   XM_038598487
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038454416   ⟸   XM_038598488
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038454422   ⟸   XM_038598494
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038454430   ⟸   XM_038598502
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038454417   ⟸   XM_038598489
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038454423   ⟸   XM_038598495
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038454419   ⟸   XM_038598491
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038454424   ⟸   XM_038598496
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038454420   ⟸   XM_038598492
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038454426   ⟸   XM_038598498
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038454427   ⟸   XM_038598499
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038454421   ⟸   XM_038598493
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038454428   ⟸   XM_038598500
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038454429   ⟸   XM_038598501
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038518721   ⟸   XM_038662793
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038518733   ⟸   XM_038662805
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038518718   ⟸   XM_038662790
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038518719   ⟸   XM_038662791
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NF56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518726   ⟸   XM_038662798
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038518734   ⟸   XM_038662806
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038518732   ⟸   XM_038662804
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038518720   ⟸   XM_038662792
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038518727   ⟸   XM_038662799
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038518722   ⟸   XM_038662794
- Peptide Label: isoform X9
- UniProtKB: A0A8C0Q5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518725   ⟸   XM_038662797
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518729   ⟸   XM_038662801
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038518728   ⟸   XM_038662800
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038518723   ⟸   XM_038662795
- Peptide Label: isoform X10
- UniProtKB: A0A8C0NQ50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518730   ⟸   XM_038662802
- Peptide Label: isoform X15
- UniProtKB: A0A8I3MS31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518731   ⟸   XM_038662803
- Peptide Label: isoform X16
- UniProtKB: A0A8I3MSW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518724   ⟸   XM_038662796
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038346382   ⟸   XM_038490454
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038346391   ⟸   XM_038490463
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038346339   ⟸   XM_038490411
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038346356   ⟸   XM_038490428
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038346373   ⟸   XM_038490445
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038346374   ⟸   XM_038490446
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038390102   ⟸   XM_038534174
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038390115   ⟸   XM_038534187
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038390099   ⟸   XM_038534171
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038390100   ⟸   XM_038534172
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NF56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390108   ⟸   XM_038534180
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038390116   ⟸   XM_038534188
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038390114   ⟸   XM_038534186
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038390101   ⟸   XM_038534173
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038390109   ⟸   XM_038534181
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038390103   ⟸   XM_038534175
- Peptide Label: isoform X9
- UniProtKB: A0A8C0Q5B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390106   ⟸   XM_038534178
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038390111   ⟸   XM_038534183
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038390110   ⟸   XM_038534182
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038390104   ⟸   XM_038534176
- Peptide Label: isoform X10
- UniProtKB: A0A8C0NQ50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390112   ⟸   XM_038534184
- Peptide Label: isoform X15
- UniProtKB: A0A8I3MS31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390113   ⟸   XM_038534185
- Peptide Label: isoform X16
- UniProtKB: A0A8I3MSW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390105   ⟸   XM_038534177
- Peptide Label: isoform X11
RefSeq Acc Id: ENSCAFP00845005532   ⟸   ENSCAFT00845006942
RefSeq Acc Id: ENSCAFP00845005561   ⟸   ENSCAFT00845006973
RefSeq Acc Id: ENSCAFP00845005575   ⟸   ENSCAFT00845006988
RefSeq Acc Id: ENSCAFP00845005582   ⟸   ENSCAFT00845006998
RefSeq Acc Id: ENSCAFP00845005594   ⟸   ENSCAFT00845007011
RefSeq Acc Id: ENSCAFP00845005545   ⟸   ENSCAFT00845006956

Promoters
RGD ID:13682906
Promoter ID:EPDNEW_C974
Type:multiple initiation site
Name:COL13A1_1
Description:collagen type XIII alpha 1 chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1420,838,760 - 20,838,820EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013983 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014477 UniProtKB/TrEMBL
  ENSCAFG00040003948 UniProtKB/TrEMBL
  ENSCAFG00845003810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022194.5 UniProtKB/TrEMBL
  ENSCAFT00000072096.2 UniProtKB/TrEMBL
  ENSCAFT00000077443.2 UniProtKB/TrEMBL
  ENSCAFT00000079626.2 UniProtKB/TrEMBL
  ENSCAFT00000082053.2 UniProtKB/TrEMBL
  ENSCAFT00000093508.2 UniProtKB/TrEMBL
  ENSCAFT00000106906.1 UniProtKB/TrEMBL
  ENSCAFT00030027051.1 UniProtKB/TrEMBL
  ENSCAFT00030027329.1 UniProtKB/TrEMBL
  ENSCAFT00030027575.1 UniProtKB/TrEMBL
  ENSCAFT00030027943.1 UniProtKB/TrEMBL
  ENSCAFT00030028186.1 UniProtKB/TrEMBL
  ENSCAFT00030028517.1 UniProtKB/TrEMBL
  ENSCAFT00030028664.1 UniProtKB/TrEMBL
  ENSCAFT00030028875.1 UniProtKB/TrEMBL
  ENSCAFT00030028965.1 UniProtKB/TrEMBL
  ENSCAFT00040007528.1 UniProtKB/TrEMBL
  ENSCAFT00040007580.1 UniProtKB/TrEMBL
  ENSCAFT00040007597.1 UniProtKB/TrEMBL
  ENSCAFT00040007610.1 UniProtKB/TrEMBL
  ENSCAFT00040007675.1 UniProtKB/TrEMBL
  ENSCAFT00040007754.1 UniProtKB/TrEMBL
  ENSCAFT00040007773.1 UniProtKB/TrEMBL
  ENSCAFT00040007797.1 UniProtKB/TrEMBL
  ENSCAFT00040007820.1 UniProtKB/TrEMBL
  ENSCAFT00845006942 ENTREZGENE
  ENSCAFT00845006942.1 UniProtKB/TrEMBL
  ENSCAFT00845006956 ENTREZGENE
  ENSCAFT00845006956.1 UniProtKB/TrEMBL
  ENSCAFT00845006973 ENTREZGENE
  ENSCAFT00845006973.1 UniProtKB/TrEMBL
  ENSCAFT00845006988 ENTREZGENE
  ENSCAFT00845006988.1 UniProtKB/TrEMBL
  ENSCAFT00845006998.1 UniProtKB/TrEMBL
  ENSCAFT00845007011 ENTREZGENE
  ENSCAFT00845007011.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
NCBI Gene COL13A1 ENTREZGENE
PANTHER COLLAGEN ALPHA-1(XIII) CHAIN ISOFORM X2 UniProtKB/TrEMBL
  SI:CH211-266K2.1 UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
UniProt A0A8C0ND27_CANLF UniProtKB/TrEMBL
  A0A8C0NF56 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NQ50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NQP7_CANLF UniProtKB/TrEMBL
  A0A8C0Q0T3_CANLF UniProtKB/TrEMBL
  A0A8C0Q0V6_CANLF UniProtKB/TrEMBL
  A0A8C0Q5B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q5F7_CANLF UniProtKB/TrEMBL
  A0A8C0QCA6_CANLF UniProtKB/TrEMBL
  A0A8C0QCM1_CANLF UniProtKB/TrEMBL
  A0A8C0RKR8_CANLF UniProtKB/TrEMBL
  A0A8C0RXB0_CANLF UniProtKB/TrEMBL
  A0A8I3MJI6_CANLF UniProtKB/TrEMBL
  A0A8I3MRF3_CANLF UniProtKB/TrEMBL
  A0A8I3MS31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MS57_CANLF UniProtKB/TrEMBL
  A0A8I3MS68_CANLF UniProtKB/TrEMBL
  A0A8I3MSW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NTR7_CANLF UniProtKB/TrEMBL
  A0A8P0P801_CANLF UniProtKB/TrEMBL
  A0A8P0P803_CANLF UniProtKB/TrEMBL
  A0A8P0PPW6_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0TE30 UniProtKB/TrEMBL
VGNC ID VGNC:39459 ENTREZGENE