CHRNA4 (cholinergic receptor nicotinic alpha 4 subunit) - Rat Genome Database

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Gene: CHRNA4 (cholinergic receptor nicotinic alpha 4 subunit) Canis lupus familiaris
Analyze
Symbol: CHRNA4
Name: cholinergic receptor nicotinic alpha 4 subunit
RGD ID: 12206156
Description: ENCODES a protein that exhibits acetylcholine binding (ortholog); acetylcholine receptor activity (ortholog); acetylcholine-gated monoatomic cation-selective channel activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); B cell activation (ortholog); behavioral response to nicotine (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN acetylcholine-gated channel complex (ortholog); cholinergic synapse (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal acetylcholine receptor subunit alpha-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,024,948 - 47,036,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,025,187 - 47,042,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,208,582 - 46,223,310 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,978,552 - 47,993,300 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,977,796 - 47,988,696 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,993,833 - 47,005,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,118,082 - 47,132,739 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,874,247 - 47,888,996 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
acetylcholine signaling pathway via nicotinic acetylcholine receptor  (ISO)
alfentanil pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
nicotine pharmacokinetics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHRNA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,024,948 - 47,036,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,025,187 - 47,042,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,208,582 - 46,223,310 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,978,552 - 47,993,300 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,977,796 - 47,988,696 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,993,833 - 47,005,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,118,082 - 47,132,739 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,874,247 - 47,888,996 (-)NCBIUU_Cfam_GSD_1.0
CHRNA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,343,223 - 63,361,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,343,223 - 63,378,401 (-)EnsemblGRCh38hg38GRCh38
GRCh372061,974,575 - 61,992,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,445,109 - 61,463,192 (-)NCBINCBI36Build 36hg18NCBI36
Build 342061,446,464 - 61,463,192NCBI
Celera2058,652,104 - 58,670,128 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,700,254 - 58,717,202 (-)NCBIHuRef
CHM1_12061,875,694 - 61,893,903 (-)NCBICHM1_1
T2T-CHM13v2.02065,149,372 - 65,167,972 (-)NCBIT2T-CHM13v2.0
Chrna4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,664,104 - 180,685,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,660,173 - 180,685,339 (-)EnsemblGRCm39 Ensembl
GRCm382181,022,311 - 181,043,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,018,380 - 181,043,546 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,757,016 - 180,773,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,951,719 - 180,968,585 (-)NCBIMGSCv36mm8
Celera2185,108,778 - 185,125,645 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.54NCBI
Chrna4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,506,802 - 188,535,558 (-)NCBIGRCr8
mRatBN7.23168,136,246 - 168,157,839 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,136,266 - 168,156,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,520,220 - 172,537,355 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,479,311 - 181,496,446 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,140,859 - 178,157,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,533,182 - 176,547,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,527,516 - 176,548,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,243,234 - 180,258,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,171,214 - 170,185,998 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13170,077,249 - 170,092,033 (-)NCBI
Celera3164,428,976 - 164,443,759 (+)NCBICelera
RH 3.4 Map31564.7RGD
RH 3.4 Map31531.39RGD
Cytogenetic Map3q43NCBI
Chrna4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528825,308 - 841,270 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528825,314 - 840,994 (+)NCBIChiLan1.0ChiLan1.0
CHRNA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,134,670 - 69,153,450 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,126,676 - 69,145,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,730,759 - 59,748,678 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12061,267,958 - 61,284,640 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,270,631 - 61,283,005 (-)Ensemblpanpan1.1panPan2
Chrna4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,227,250 - 195,242,216 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,680,859 - 10,695,865 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,680,893 - 10,695,859 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,423,878 - 62,435,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,424,672 - 62,436,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHRNA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12851,790 - 862,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605048,462,591 - 48,480,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrna4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,026,908 - 29,044,464 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,024,668 - 29,039,684 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHRNA4
338 total Variants

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022409244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000020498   ⟹   ENSCAFP00000019023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2447,025,187 - 47,036,672 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000079642   ⟹   ENSCAFP00000059288
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2447,025,189 - 47,042,266 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845036740   ⟹   ENSCAFP00845028764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,977,796 - 47,988,696 (-)Ensembl
RefSeq Acc Id: XM_038434329   ⟹   XP_038290257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,989,953 (-)NCBI
RefSeq Acc Id: XM_038434330   ⟹   XP_038290258
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,993,293 (-)NCBI
RefSeq Acc Id: XM_038434331   ⟹   XP_038290259
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,993,257 (-)NCBI
RefSeq Acc Id: XM_038434332   ⟹   XP_038290260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,993,293 (-)NCBI
RefSeq Acc Id: XM_038434333   ⟹   XP_038290261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,993,300 (-)NCBI
RefSeq Acc Id: XM_038434334   ⟹   XP_038290262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,993,257 (-)NCBI
RefSeq Acc Id: XM_038434335   ⟹   XP_038290263
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,978,552 - 47,986,052 (-)NCBI
RefSeq Acc Id: XM_038458117   ⟹   XP_038314045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,220,007 (-)NCBI
RefSeq Acc Id: XM_038458118   ⟹   XP_038314046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,223,303 (-)NCBI
RefSeq Acc Id: XM_038458119   ⟹   XP_038314047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,223,267 (-)NCBI
RefSeq Acc Id: XM_038458120   ⟹   XP_038314048
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,223,303 (-)NCBI
RefSeq Acc Id: XM_038458121   ⟹   XP_038314049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,223,310 (-)NCBI
RefSeq Acc Id: XM_038458122   ⟹   XP_038314050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,223,267 (-)NCBI
RefSeq Acc Id: XM_038458123   ⟹   XP_038314051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,222,075 (-)NCBI
RefSeq Acc Id: XM_038458124   ⟹   XP_038314052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,208,582 - 46,216,070 (-)NCBI
RefSeq Acc Id: XM_038509483   ⟹   XP_038365411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,993,833 - 47,005,225 (-)NCBI
RefSeq Acc Id: XM_038572840   ⟹   XP_038428768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,885,649 (-)NCBI
RefSeq Acc Id: XM_038572841   ⟹   XP_038428769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,888,989 (-)NCBI
RefSeq Acc Id: XM_038572842   ⟹   XP_038428770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,888,952 (-)NCBI
RefSeq Acc Id: XM_038572843   ⟹   XP_038428771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,888,989 (-)NCBI
RefSeq Acc Id: XM_038572844   ⟹   XP_038428772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,888,996 (-)NCBI
RefSeq Acc Id: XM_038572845   ⟹   XP_038428773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,888,952 (-)NCBI
RefSeq Acc Id: XM_038572846   ⟹   XP_038428774
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,874,247 - 47,881,748 (-)NCBI
RefSeq Acc Id: XM_038637117   ⟹   XP_038493045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,129,460 (-)NCBI
RefSeq Acc Id: XM_038637119   ⟹   XP_038493047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,132,732 (-)NCBI
RefSeq Acc Id: XM_038637120   ⟹   XP_038493048
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,132,695 (-)NCBI
RefSeq Acc Id: XM_038637121   ⟹   XP_038493049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,132,732 (-)NCBI
RefSeq Acc Id: XM_038637122   ⟹   XP_038493050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,132,739 (-)NCBI
RefSeq Acc Id: XM_038637123   ⟹   XP_038493051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,132,695 (-)NCBI
RefSeq Acc Id: XM_038637124   ⟹   XP_038493052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,131,505 (-)NCBI
RefSeq Acc Id: XM_038637125   ⟹   XP_038493053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,118,082 - 47,125,547 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038290257 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290258 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290259 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290260 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290262 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290263 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314046 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314048 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365411 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428768 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428770 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428771 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493048 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493053 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000059288.2
  ENSCAFP00040039980.1
  ENSCAFP00845028764
  ENSCAFP00845028764.1
Ensembl Acc Id: ENSCAFP00000019023   ⟸   ENSCAFT00000020498
Ensembl Acc Id: ENSCAFP00000059288   ⟸   ENSCAFT00000079642
RefSeq Acc Id: XP_038365411   ⟸   XM_038509483
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038493050   ⟸   XM_038637122
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493049   ⟸   XM_038637121
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493047   ⟸   XM_038637119
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493051   ⟸   XM_038637123
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493048   ⟸   XM_038637120
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493052   ⟸   XM_038637124
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493045   ⟸   XM_038637117
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038493053   ⟸   XM_038637125
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038290261   ⟸   XM_038434333
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290260   ⟸   XM_038434332
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290258   ⟸   XM_038434330
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290262   ⟸   XM_038434334
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290259   ⟸   XM_038434331
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290257   ⟸   XM_038434329
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290263   ⟸   XM_038434335
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038314049   ⟸   XM_038458121
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314048   ⟸   XM_038458120
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314046   ⟸   XM_038458118
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314050   ⟸   XM_038458122
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314047   ⟸   XM_038458119
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314051   ⟸   XM_038458123
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314045   ⟸   XM_038458117
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314052   ⟸   XM_038458124
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038428772   ⟸   XM_038572844
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428771   ⟸   XM_038572843
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428769   ⟸   XM_038572841
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428773   ⟸   XM_038572845
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428770   ⟸   XM_038572842
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428768   ⟸   XM_038572840
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JJF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428774   ⟸   XM_038572846
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCAFP00845028764   ⟸   ENSCAFT00845036740
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012893 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040024586 UniProtKB/TrEMBL
  ENSCAFG00845020832 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000079642.2 UniProtKB/TrEMBL
  ENSCAFT00040045806.1 UniProtKB/TrEMBL
  ENSCAFT00845036740 ENTREZGENE
  ENSCAFT00845036740.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/TrEMBL
NCBI Gene CHRNA4 ENTREZGENE
PANTHER NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-4 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS NICOTINICR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A8C0JJF0 ENTREZGENE
  A0A8C0TQ70_CANLF UniProtKB/TrEMBL
  A0A8I3S4L3_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0P8F4 UniProtKB/TrEMBL
VGNC ID VGNC:39239 ENTREZGENE