SPATA45 (spermatogenesis associated 45) - Rat Genome Database

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Gene: SPATA45 (spermatogenesis associated 45) Canis lupus familiaris
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Symbol: SPATA45
Name: spermatogenesis associated 45
RGD ID: 12204102
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C7H1orf227; spermatogenesis-associated protein 45
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,958,793 - 10,970,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,958,904 - 10,965,744 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,512,886 - 10,544,782 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,643,569 - 10,675,682 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1710,566,412 - 10,598,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,667,584 - 10,699,778 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,791,819 - 10,823,940 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SPATA45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,958,793 - 10,970,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,958,904 - 10,965,744 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,512,886 - 10,544,782 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,643,569 - 10,675,682 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1710,566,412 - 10,598,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,667,584 - 10,699,778 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,791,819 - 10,823,940 (-)NCBIUU_Cfam_GSD_1.0
SPATA45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,830,141 - 212,847,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,830,141 - 212,847,649 (-)EnsemblGRCh38hg38GRCh38
GRCh371213,003,483 - 213,020,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361211,070,106 - 211,087,614 (-)NCBINCBI36Build 36hg18NCBI36
Celera1186,229,475 - 186,246,986 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,680,222 - 183,698,104 (-)NCBIHuRef
T2T-CHM13v2.01212,075,115 - 212,092,629 (-)NCBIT2T-CHM13v2.0
Spata45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,768,106 - 190,775,139 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,768,836 - 190,775,139 (+)EnsemblGRCm39 Ensembl
GRCm381191,035,909 - 191,042,942 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,036,639 - 191,042,942 (+)EnsemblGRCm38mm10GRCm38
MGSCv371192,860,701 - 192,866,820 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,737,437 - 192,743,557 (+)NCBIMGSCv36mm8
Celera1197,961,735 - 197,967,537 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Spata45-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81818,400,164 - 18,400,542 (-)NCBIGRCr8
mRatBN7.21818,125,485 - 18,125,863 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01819,149,139 - 19,149,530 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01818,898,899 - 18,899,262 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41818,681,252 - 18,681,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1818,020,465 - 18,020,856 (-)NCBICelera
Cytogenetic Map18p12NCBI
Spata45
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554064,725,076 - 4,731,285 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554064,702,976 - 4,731,424 (+)NCBIChiLan1.0ChiLan1.0
SPATA45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,546,123 - 36,572,943 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,510,194 - 36,536,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,399,017 - 188,425,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,257,756 - 193,275,400 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,257,857 - 193,263,654 (-)Ensemblpanpan1.1panPan2
Spata45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,487,015 - 63,509,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557742,503 - 749,519 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557742,523 - 749,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA45
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,688,512 - 16,690,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605517,183,487 - 17,213,776 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SPATA45
125 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 3 17 1 6 1 5 12 10 3
Below cutoff 2 5 5 5 5 1 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003434963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005622356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038542097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038542098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038542099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000090599   ⟹   ENSCAFP00000046195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl710,958,904 - 10,965,744 (-)Ensembl
RefSeq Acc Id: XM_003434963   ⟹   XP_003435011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1710,958,793 - 10,970,098 (-)NCBI
Dog10K_Boxer_Tasha710,533,478 - 10,544,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005622356   ⟹   XP_005622413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1710,958,859 - 10,970,098 (-)NCBI
Dog10K_Boxer_Tasha710,533,544 - 10,544,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038480775   ⟹   XP_038336703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1710,566,412 - 10,598,188 (-)NCBI
RefSeq Acc Id: XM_038480776   ⟹   XP_038336704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1710,586,890 - 10,598,188 (-)NCBI
RefSeq Acc Id: XM_038542097   ⟹   XP_038398025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0710,812,691 - 10,823,940 (-)NCBI
RefSeq Acc Id: XM_038542098   ⟹   XP_038398026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0710,791,819 - 10,823,940 (-)NCBI
RefSeq Acc Id: XM_038542099   ⟹   XP_038398027
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0710,812,625 - 10,823,940 (-)NCBI
RefSeq Acc Id: XM_038562692   ⟹   XP_038418620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha710,512,886 - 10,544,782 (-)NCBI
RefSeq Acc Id: XM_038606253   ⟹   XP_038462181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0710,667,584 - 10,699,778 (-)NCBI
RefSeq Acc Id: XM_038606254   ⟹   XP_038462182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0710,688,496 - 10,699,778 (-)NCBI
RefSeq Acc Id: XM_038670949   ⟹   XP_038526877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0710,664,439 - 10,675,682 (-)NCBI
RefSeq Acc Id: XM_038670950   ⟹   XP_038526878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0710,643,569 - 10,675,682 (-)NCBI
RefSeq Acc Id: XM_038670951   ⟹   XP_038526879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0710,664,373 - 10,675,682 (-)NCBI
RefSeq Acc Id: XP_005622413   ⟸   XM_005622356
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDR1 (UniProtKB/TrEMBL),   A0A8P0SZ90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003435011   ⟸   XM_003434963
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTC3 (UniProtKB/TrEMBL),   A0A8C0MPW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000046195   ⟸   ENSCAFT00000090599
RefSeq Acc Id: XP_038336703   ⟸   XM_038480775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038336704   ⟸   XM_038480776
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038462181   ⟸   XM_038606253
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038462182   ⟸   XM_038606254
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038526878   ⟸   XM_038670950
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038526879   ⟸   XM_038670951
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTC3 (UniProtKB/TrEMBL),   A0A8C0MPW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526877   ⟸   XM_038670949
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDR1 (UniProtKB/TrEMBL),   A0A8P0SZ90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418620   ⟸   XM_038562692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038398026   ⟸   XM_038542098
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038398027   ⟸   XM_038542099
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MPW2 (UniProtKB/TrEMBL),   A0A8C0PTC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038398025   ⟸   XM_038542097
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDR1 (UniProtKB/TrEMBL),   A0A8P0SZ90 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029517 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006235 UniProtKB/TrEMBL
  ENSCAFG00040000708 UniProtKB/TrEMBL
  ENSCAFG00845001121 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000090599.2 UniProtKB/TrEMBL
  ENSCAFT00030011437.1 UniProtKB/TrEMBL
  ENSCAFT00030011466.1 UniProtKB/TrEMBL
  ENSCAFT00040001286.1 UniProtKB/TrEMBL
  ENSCAFT00845001916.1 UniProtKB/TrEMBL
InterPro SPATA45 UniProtKB/TrEMBL
KEGG Report cfa:100683173 UniProtKB/TrEMBL
NCBI Gene SPATA45 ENTREZGENE
PANTHER PTHR35822 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 45 UniProtKB/TrEMBL
UniProt A0A8C0MJH4_CANLF UniProtKB/TrEMBL
  A0A8C0MPW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PTC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MDR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SZ90 ENTREZGENE, UniProtKB/TrEMBL