Gene: SPATA45 (spermatogenesis associated 45) Canis lupus familiaris |
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Analyze |
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Symbol: |
SPATA45 |
Name: |
spermatogenesis associated 45 |
RGD ID: |
12204102 |
Description: |
ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
C7H1orf227; spermatogenesis-associated protein 45 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
Position: |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 7 | 10,958,793 - 10,970,098 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 10,958,904 - 10,965,744 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 10,512,886 - 10,544,782 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 10,643,569 - 10,675,682 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 7 | 10,566,412 - 10,598,188 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 10,667,584 - 10,699,778 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 10,791,819 - 10,823,940 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
SPATA45 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 7 | 10,958,793 - 10,970,098 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 10,958,904 - 10,965,744 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 10,512,886 - 10,544,782 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 10,643,569 - 10,675,682 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 7 | 10,566,412 - 10,598,188 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 10,667,584 - 10,699,778 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 10,791,819 - 10,823,940 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SPATA45 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 212,830,141 - 212,847,649 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 212,830,141 - 212,847,649 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 213,003,483 - 213,020,991 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 211,070,106 - 211,087,614 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 186,229,475 - 186,246,986 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q32.3 | NCBI | | | | | HuRef | 1 | 183,680,222 - 183,698,104 (-) | NCBI | | HuRef | | | T2T-CHM13v2.0 | 1 | 212,075,115 - 212,092,629 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Spata45 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 190,768,106 - 190,775,139 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 190,768,836 - 190,775,139 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 191,035,909 - 191,042,942 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 191,036,639 - 191,042,942 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 192,860,701 - 192,866,820 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 192,737,437 - 192,743,557 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 197,961,735 - 197,967,537 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | H6 | NCBI | | | | | cM Map | 1 | 96.28 | NCBI | | | | |
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Spata45-ps1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 18 | 18,400,164 - 18,400,542 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 18 | 18,125,485 - 18,125,863 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 18 | 19,149,139 - 19,149,530 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 18 | 18,898,899 - 18,899,262 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 18 | 18,681,252 - 18,681,545 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 18 | 18,020,465 - 18,020,856 (-) | NCBI | | Celera | | | Cytogenetic Map | 18 | p12 | NCBI | | | | |
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Spata45 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955406 | 4,725,076 - 4,731,285 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955406 | 4,702,976 - 4,731,424 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SPATA45 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 36,546,123 - 36,572,943 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 36,510,194 - 36,536,339 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 188,399,017 - 188,425,336 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 193,257,756 - 193,275,400 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 193,257,857 - 193,263,654 (-) | Ensembl | panpan1.1 | | panPan2 | |
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Spata45 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SPATA45 (Chlorocebus sabaeus - green monkey) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
adipose tissue |
High |
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Medium |
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8
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Low |
3
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17
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1
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6
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1
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5
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12
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10
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3
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Below cutoff |
2
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5
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5
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5
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5
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1
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6
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3
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Sequence
RefSeq Acc Id: |
ENSCAFT00000090599 ⟹ ENSCAFP00000046195 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 7 | 10,958,904 - 10,965,744 (-) | Ensembl |
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RefSeq Acc Id: |
XM_003434963 ⟹ XP_003435011 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 | 7 | 10,958,793 - 10,970,098 (-) | NCBI | Dog10K_Boxer_Tasha | 7 | 10,533,478 - 10,544,782 (-) | NCBI |
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Sequence: |
GGTTCTATGAAGAGAACAAAGTTGGAATGTCTTAGGTCATGATGTTCTATCACCAGGGTAACAT TACAGTAGGCTGATCCAAACCAGTGGACTTCAAACAGGCTTTGGGTTGCTGTGCATTAAAGGAC AGCAGGAATCATTTGATGATTCCTTTGCCAGCACAATGACTTCTACAAACAGGACCAGTGAAAG AATTGAAAAGCTTAAAGCAAGCAGACAACGTCTCCTGGAGGAAATAAATGAAAAGCGTGAATCC AACTGCTTTGTGGAAAGAAGCAATCAAGTTAGCTCACTGAGAGTTCAAAAGAGGCATTTCAGCA CCGCCTGTCAGTCCTCTACTCACACTCAAATTAAAGAATCTGTTCCTGACAGTGGCAGGAGCTC CTGGATTAAACGGAGTCTCCTTGCTCACCCAGAGAAAAAGCACTTTCCTGCAAAAAATAATGCC ATATTTGGATAAAGTGCATCTCCAGAGACACACAGAAATATAATTTCTTTGATCCTTCTTCAAT GTCTGTCTTATTGACAAATATTATGAAAGAAGTAAAATAATTATTCACTAGATCACCAA
hide sequence
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RefSeq Acc Id: |
XM_005622356 ⟹ XP_005622413 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 | 7 | 10,958,859 - 10,970,098 (-) | NCBI | Dog10K_Boxer_Tasha | 7 | 10,533,544 - 10,544,782 (-) | NCBI |
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Sequence: |
GGTTCTATGAAGAGAACAAAGTTGGAATGTCTTAGGTCATGATGTTCTATCACCAGGGTAACAT TACAGTAGGCTGATCCAAACCAGTGGACTTCAAACAGGCTTTGGGTTGCTGTGCATTAAAGGAC AGCAGGAATCATTTGATGATTCCTTTGCCAGCACAATGACTTCTACAAACAGGACCAGTGAAAG AATTGAAAAGCTTAAAGCAAGCAGACAACGTCTCCTGGAGGAAATAAATGAAAAGCGTGAATCC AACTGCTTTGTGGAAAGAAGCAATCAAGTTAGCTCACTGAGAGTTCAAAAGAGGCATTTCAGCA CCGCCTGTCAGTCCTCTACTCACACTCAAATTAAAGAATCTGTTCCTGACAGTGGCAGGAGCTC CTGGATTAAACGGAGTCTCCTTGCTCACCCAGAGAAAAAGCACTTTCCTGCAAAAATTTTTAGG GGATCCCAACTAGACAGATTGCTGGTCTTCAATCTTACAGGGCTTGAAGAATCTCATCTCTATT TTGATAACTTCCACATTGCTATTTCTGGCCCTGACCTTTCTTCTGAGAAGTTTTATATATCCCT CAGACTGCAGATAATGCCATATTTGGATAAAGTGCATCTCCAGAGACACACAGAAATATAATTT CTTTGATCCTT
hide sequence
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RefSeq Acc Id: |
XM_038480775 ⟹ XP_038336703 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 7 | 10,566,412 - 10,598,188 (-) | NCBI |
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RefSeq Acc Id: |
XM_038480776 ⟹ XP_038336704 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 7 | 10,586,890 - 10,598,188 (-) | NCBI |
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RefSeq Acc Id: |
XM_038542097 ⟹ XP_038398025 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 7 | 10,812,691 - 10,823,940 (-) | NCBI |
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RefSeq Acc Id: |
XM_038542098 ⟹ XP_038398026 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 7 | 10,791,819 - 10,823,940 (-) | NCBI |
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RefSeq Acc Id: |
XM_038542099 ⟹ XP_038398027 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 7 | 10,812,625 - 10,823,940 (-) | NCBI |
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RefSeq Acc Id: |
XM_038562692 ⟹ XP_038418620 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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Dog10K_Boxer_Tasha | 7 | 10,512,886 - 10,544,782 (-) | NCBI |
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RefSeq Acc Id: |
XM_038606253 ⟹ XP_038462181 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 7 | 10,667,584 - 10,699,778 (-) | NCBI |
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RefSeq Acc Id: |
XM_038606254 ⟹ XP_038462182 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 7 | 10,688,496 - 10,699,778 (-) | NCBI |
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RefSeq Acc Id: |
XM_038670949 ⟹ XP_038526877 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 7 | 10,664,439 - 10,675,682 (-) | NCBI |
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RefSeq Acc Id: |
XM_038670950 ⟹ XP_038526878 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 7 | 10,643,569 - 10,675,682 (-) | NCBI |
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RefSeq Acc Id: |
XM_038670951 ⟹ XP_038526879 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 7 | 10,664,373 - 10,675,682 (-) | NCBI |
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RefSeq Acc Id: |
XP_005622413 ⟸ XM_005622356 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8I3MDR1 (UniProtKB/TrEMBL), A0A8P0SZ90 (UniProtKB/TrEMBL) |
- Sequence: |
MTSTNRTSERIEKLKASRQRLLEEINEKRESNCFVERSNQVSSLRVQKRHFSTACQSSTHTQIK ESVPDSGRSSWIKRSLLAHPEKKHFPAKIFRGSQLDRLLVFNLTGLEESHLYFDNFHIAISGPD LSSEKFYISLRLQIMPYLDKVHLQRHTEI
hide sequence
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RefSeq Acc Id: |
XP_003435011 ⟸ XM_003434963 |
- Peptide Label: |
isoform X3 |
- UniProtKB: |
A0A8C0PTC3 (UniProtKB/TrEMBL), A0A8C0MPW2 (UniProtKB/TrEMBL) |
- Sequence: |
MTSTNRTSERIEKLKASRQRLLEEINEKRESNCFVERSNQVSSLRVQKRHFSTACQSSTHTQIK ESVPDSGRSSWIKRSLLAHPEKKHFPAKNNAIFG
hide sequence
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RefSeq Acc Id: |
ENSCAFP00000046195 ⟸ ENSCAFT00000090599 |
RefSeq Acc Id: |
XP_038336703 ⟸ XM_038480775 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038336704 ⟸ XM_038480776 |
- Peptide Label: |
isoform X3 |
RefSeq Acc Id: |
XP_038462181 ⟸ XM_038606253 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038462182 ⟸ XM_038606254 |
- Peptide Label: |
isoform X3 |
RefSeq Acc Id: |
XP_038526878 ⟸ XM_038670950 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038526879 ⟸ XM_038670951 |
- Peptide Label: |
isoform X3 |
- UniProtKB: |
A0A8C0PTC3 (UniProtKB/TrEMBL), A0A8C0MPW2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038526877 ⟸ XM_038670949 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8I3MDR1 (UniProtKB/TrEMBL), A0A8P0SZ90 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038418620 ⟸ XM_038562692 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038398026 ⟸ XM_038542098 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038398027 ⟸ XM_038542099 |
- Peptide Label: |
isoform X3 |
- UniProtKB: |
A0A8C0MPW2 (UniProtKB/TrEMBL), A0A8C0PTC3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038398025 ⟸ XM_038542097 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8I3MDR1 (UniProtKB/TrEMBL), A0A8P0SZ90 (UniProtKB/TrEMBL) |
Additional Information
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