C5H1orf174 (chromosome 5 C1orf174 homolog) - Rat Genome Database

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Gene: C5H1orf174 (chromosome 5 C1orf174 homolog) Canis lupus familiaris
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Symbol: C5H1orf174
Name: chromosome 5 C1orf174 homolog (Ensembl:chromosome 1 open reading frame 174)
RGD ID: 12202457
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0688 protein C1orf174 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,358,540 - 58,366,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,359,025 - 58,366,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,368,835 - 58,376,726 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,566,043 - 58,573,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,566,043 - 58,573,907 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,573,741 - 58,581,631 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,442,648 - 58,450,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,832,916 - 58,840,806 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
C5H1orf174
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,358,540 - 58,366,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,359,025 - 58,366,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,368,835 - 58,376,726 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,566,043 - 58,573,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,566,043 - 58,573,907 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,573,741 - 58,581,631 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,442,648 - 58,450,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,832,916 - 58,840,806 (-)NCBIUU_Cfam_GSD_1.0
C1orf174
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,889,133 - 3,900,272 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,889,125 - 3,900,293 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,805,697 - 3,816,836 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,795,557 - 3,806,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera13,059,840 - 3,070,495 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef13,101,393 - 3,112,467 (-)NCBIHuRef
CHM1_113,792,710 - 3,803,318 (-)NCBICHM1_1
T2T-CHM13v2.013,401,037 - 3,412,176 (-)NCBIT2T-CHM13v2.0
A430005L14Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,041,694 - 154,046,382 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,041,694 - 154,046,382 (+)EnsemblGRCm39 Ensembl
GRCm384153,957,237 - 153,961,925 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4153,957,237 - 153,961,925 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,331,346 - 153,336,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,801,037 - 152,805,714 (+)NCBIMGSCv36mm8
Celera4156,245,393 - 156,250,081 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.78NCBI
C5h1orf174
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85169,798,004 - 169,802,449 (+)NCBIGRCr8
mRatBN7.25164,515,578 - 164,520,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,515,559 - 164,520,021 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,219,688 - 167,224,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,041,096 - 169,045,541 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,003,545 - 169,007,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,242,899 - 171,247,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,242,897 - 171,247,346 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,734,521 - 174,738,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,743,188 - 170,747,633 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15170,753,682 - 170,758,126 (+)NCBI
Celera5162,727,542 - 162,731,987 (+)NCBICelera
Cytogenetic Map5q36NCBI
CUNH1orf174
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,831,913 - 7,833,898 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,821,396 - 7,834,357 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf174
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,399,853 - 224,417,162 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,041,337 - 223,060,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,563,184 - 2,574,235 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,682,175 - 3,692,621 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13,682,181 - 3,692,637 (-)Ensemblpanpan1.1panPan2
CUNH1orf174
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,372,566 - 29,393,056 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493673772,930 - 78,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H1orf174
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,323,756 - 65,333,886 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,326,980 - 65,333,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2660,030,404 - 60,037,317 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf174
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,780,801 - 127,792,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,780,903 - 127,791,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605431,977,059 - 31,988,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf174
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,691,432 - 6,698,596 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,691,416 - 6,698,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C5H1orf174
79 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 16 6 6 4 12 8 10 6
Low 6 6 6 2
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000031006   ⟹   ENSCAFP00000028840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl558,359,025 - 58,366,243 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845037156   ⟹   ENSCAFP00845029097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl558,566,043 - 58,573,907 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845037195   ⟹   ENSCAFP00845029130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl558,566,401 - 58,573,907 (-)Ensembl
RefSeq Acc Id: XM_038476621   ⟹   XP_038332549
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1558,573,741 - 58,581,631 (-)NCBI
RefSeq Acc Id: XM_038537757   ⟹   XP_038393685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0558,832,916 - 58,840,806 (-)NCBI
RefSeq Acc Id: XM_038601918   ⟹   XP_038457846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0558,442,648 - 58,450,536 (-)NCBI
RefSeq Acc Id: XM_038666504   ⟹   XP_038522432
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0558,566,043 - 58,573,933 (-)NCBI
RefSeq Acc Id: XM_536724   ⟹   XP_536724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1558,358,540 - 58,366,356 (-)NCBI
Dog10K_Boxer_Tasha558,368,835 - 58,376,726 (-)NCBI
Sequence:
RefSeq Acc Id: XP_536724   ⟸   XM_536724
- UniProtKB: A0A8C0K9Y7 (UniProtKB/TrEMBL),   A0A8C0M2W8 (UniProtKB/TrEMBL),   A0A8I3P6R8 (UniProtKB/TrEMBL),   A0A8C0S0E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028840   ⟸   ENSCAFT00000031006
RefSeq Acc Id: XP_038332549   ⟸   XM_038476621
RefSeq Acc Id: XP_038457846   ⟸   XM_038601918
RefSeq Acc Id: XP_038522432   ⟸   XM_038666504
- UniProtKB: A0A8C0K9Y7 (UniProtKB/TrEMBL),   A0A8C0M2W8 (UniProtKB/TrEMBL),   A0A8I3P6R8 (UniProtKB/TrEMBL),   A0A8C0S0E9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393685   ⟸   XM_038537757
- UniProtKB: A0A8C0K9Y7 (UniProtKB/TrEMBL),   A0A8C0M2W8 (UniProtKB/TrEMBL),   A0A8C0S0E9 (UniProtKB/TrEMBL),   A0A8I3P6R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845029130   ⟸   ENSCAFT00845037195
RefSeq Acc Id: ENSCAFP00845029097   ⟸   ENSCAFT00845037156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019504 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003347 UniProtKB/TrEMBL
  ENSCAFG00040008153 UniProtKB/TrEMBL
  ENSCAFG00845021062 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031006.5 UniProtKB/TrEMBL
  ENSCAFT00000096165.1 UniProtKB/TrEMBL
  ENSCAFT00030006239.1 UniProtKB/TrEMBL
  ENSCAFT00040015241.1 UniProtKB/TrEMBL
  ENSCAFT00845037156 ENTREZGENE
  ENSCAFT00845037156.1 UniProtKB/TrEMBL
  ENSCAFT00845037195.1 UniProtKB/TrEMBL
InterPro UPF0688 UniProtKB/TrEMBL
KEGG Report cfa:479586 UniProtKB/TrEMBL
NCBI Gene C5H1orf174 ENTREZGENE
PANTHER PTHR28491 UniProtKB/TrEMBL
  UPF0688 PROTEIN C1ORF174 UniProtKB/TrEMBL
Pfam UPF0688 UniProtKB/TrEMBL
UniProt A0A8C0K9Y7 ENTREZGENE
  A0A8C0M2W8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S0E9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P6R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S4Q0_CANLF UniProtKB/TrEMBL
  A0A8P0NKD0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:52566 ENTREZGENE