NCAPG (non-SMC condensin I complex subunit G) - Rat Genome Database

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Gene: NCAPG (non-SMC condensin I complex subunit G) Canis lupus familiaris
Analyze
Symbol: NCAPG
Name: non-SMC condensin I complex subunit G
RGD ID: 12202432
Description: INVOLVED IN positive regulation of chromosome segregation (ortholog); positive regulation of chromosome separation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Disease Progression (ortholog); Endometrial Neoplasms (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: condensin complex subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,279,800 - 91,322,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha393,745,415 - 93,788,076 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,276,176 - 92,319,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,449,153 - 91,492,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,502,487 - 91,545,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0391,886,702 - 91,929,596 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NCAPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,279,800 - 91,322,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha393,745,415 - 93,788,076 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,276,176 - 92,319,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,449,153 - 91,492,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,502,487 - 91,545,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0391,886,702 - 91,929,596 (-)NCBIUU_Cfam_GSD_1.0
NCAPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38417,810,979 - 17,844,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl417,810,979 - 17,844,865 (+)EnsemblGRCh38hg38GRCh38
GRCh37417,812,602 - 17,846,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36417,421,623 - 17,455,586 (+)NCBINCBI36Build 36hg18NCBI36
Celera418,277,506 - 18,311,469 (+)NCBICelera
Cytogenetic Map4p15.31NCBI
HuRef417,167,187 - 17,201,238 (+)NCBIHuRef
CHM1_1417,810,377 - 17,844,429 (+)NCBICHM1_1
T2T-CHM13v2.0417,793,327 - 17,827,212 (+)NCBIT2T-CHM13v2.0
Ncapg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39545,827,212 - 45,858,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl545,827,261 - 45,857,888 (+)EnsemblGRCm39 Ensembl
GRCm38545,669,891 - 45,700,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl545,669,919 - 45,700,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37546,061,164 - 46,091,786 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera543,092,590 - 43,123,298 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map525.23NCBI
Ncapg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81469,616,473 - 69,645,445 (-)NCBIGRCr8
mRatBN7.21465,403,930 - 65,432,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1465,404,163 - 65,432,902 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1469,776,769 - 69,804,027 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01471,083,969 - 71,112,941 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01467,487,169 - 67,514,423 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01469,898,268 - 69,927,885 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1469,899,128 - 69,927,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01469,941,502 - 69,970,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41470,465,952 - 70,494,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1464,386,930 - 64,415,898 (-)NCBICelera
Cytogenetic Map14q11NCBI
Ncapg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554806,399,960 - 6,430,645 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554806,399,891 - 6,430,617 (-)NCBIChiLan1.0ChiLan1.0
NCAPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2318,074,246 - 18,119,605 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1418,272,263 - 18,314,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0412,232,614 - 12,265,320 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1417,527,055 - 17,561,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl417,524,826 - 17,571,798 (+)Ensemblpanpan1.1panPan2
Ncapg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528556,706,655 - 56,743,580 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647710,405,997 - 10,445,206 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647710,408,347 - 10,445,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl812,759,641 - 12,807,163 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1812,759,225 - 12,807,164 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2812,560,111 - 12,603,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12732,380,722 - 32,413,659 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2732,377,575 - 32,413,494 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604779,106,789 - 79,140,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncapg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475514,068,009 - 14,100,438 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475514,067,931 - 14,100,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NCAPG
329 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 5 6 6 5
Below cutoff 5 22 6 6 6 12 5 6

Sequence


RefSeq Acc Id: ENSCAFT00000026415   ⟹   ENSCAFP00000024530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065010   ⟹   ENSCAFP00000064904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072185   ⟹   ENSCAFP00000056888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084622   ⟹   ENSCAFP00000057728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl391,281,077 - 91,322,803 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000822   ⟹   ENSCAFP00845000615
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000858   ⟹   ENSCAFP00845000647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000901   ⟹   ENSCAFP00845000675
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000953   ⟹   ENSCAFP00845000718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl392,276,185 - 92,319,196 (-)Ensembl
RefSeq Acc Id: XM_038472617   ⟹   XP_038328545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1391,449,153 - 91,492,044 (-)NCBI
RefSeq Acc Id: XM_038533608   ⟹   XP_038389536
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0391,886,702 - 91,929,596 (-)NCBI
RefSeq Acc Id: XM_038597894   ⟹   XP_038453822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0391,502,487 - 91,545,387 (-)NCBI
RefSeq Acc Id: XM_038662116   ⟹   XP_038518044
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0392,276,176 - 92,319,082 (-)NCBI
RefSeq Acc Id: XM_536278   ⟹   XP_536278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1391,279,800 - 91,322,678 (-)NCBI
Dog10K_Boxer_Tasha393,745,415 - 93,788,076 (-)NCBI
Sequence:
RefSeq Acc Id: XP_536278   ⟸   XM_536278
- UniProtKB: A0A8C0LXX0 (UniProtKB/TrEMBL),   A0A8C0LNF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000057728   ⟸   ENSCAFT00000084622
RefSeq Acc Id: ENSCAFP00000056888   ⟸   ENSCAFT00000072185
RefSeq Acc Id: ENSCAFP00000064904   ⟸   ENSCAFT00000065010
RefSeq Acc Id: ENSCAFP00000024530   ⟸   ENSCAFT00000026415
RefSeq Acc Id: XP_038328545   ⟸   XM_038472617
RefSeq Acc Id: XP_038453822   ⟸   XM_038597894
RefSeq Acc Id: XP_038518044   ⟸   XM_038662116
- UniProtKB: A0A8C0LXX0 (UniProtKB/TrEMBL),   A0A8C0LNF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389536   ⟸   XM_038533608
- UniProtKB: A0A8C0LNF5 (UniProtKB/TrEMBL),   A0A8C0LXX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000718   ⟸   ENSCAFT00845000953
RefSeq Acc Id: ENSCAFP00845000647   ⟸   ENSCAFT00845000858
RefSeq Acc Id: ENSCAFP00845000675   ⟸   ENSCAFT00845000901
RefSeq Acc Id: ENSCAFP00845000615   ⟸   ENSCAFT00845000822

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016677 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000712 UniProtKB/TrEMBL
  ENSCAFG00040003184 UniProtKB/TrEMBL
  ENSCAFG00845000445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026415.5 UniProtKB/TrEMBL
  ENSCAFT00000065010.2 UniProtKB/TrEMBL
  ENSCAFT00000072185.2 UniProtKB/TrEMBL
  ENSCAFT00000084622.2 UniProtKB/TrEMBL
  ENSCAFT00030001205.1 UniProtKB/TrEMBL
  ENSCAFT00040006041.1 UniProtKB/TrEMBL
  ENSCAFT00845000822 ENTREZGENE
  ENSCAFT00845000822.1 UniProtKB/TrEMBL
  ENSCAFT00845000858.1 UniProtKB/TrEMBL
  ENSCAFT00845000901.1 UniProtKB/TrEMBL
  ENSCAFT00845000953.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CND3 UniProtKB/TrEMBL
  Cnd3_C UniProtKB/TrEMBL
KEGG Report cfa:479132 UniProtKB/TrEMBL
NCBI Gene NCAPG ENTREZGENE
PANTHER CONDENSIN COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR14418 UniProtKB/TrEMBL
Pfam Cnd3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0LNF5 ENTREZGENE
  A0A8C0LXX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RWW9_CANLF UniProtKB/TrEMBL
  A0A8I3MAX3_CANLF UniProtKB/TrEMBL
  A0A8I3MAY0_CANLF UniProtKB/TrEMBL
  A0A8I3MDA2_CANLF UniProtKB/TrEMBL
  A0A8I3MWC2_CANLF UniProtKB/TrEMBL
  A0A8P0PDH0_CANLF UniProtKB/TrEMBL
  A0A8P0T906_CANLF UniProtKB/TrEMBL
  A0A8P0T9R6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43641 ENTREZGENE