SLC38A5 (solute carrier family 38 member 5) - Rat Genome Database

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Gene: SLC38A5 (solute carrier family 38 member 5) Canis lupus familiaris
Analyze
Symbol: SLC38A5
Name: solute carrier family 38 member 5
RGD ID: 12196264
Description: ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN asparagine transmembrane transport (ortholog); glutamine transport (ortholog); glycine transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Endotoxemia (ortholog); Malformations of Cortical Development, Group II (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: sodium-coupled neutral amino acid transporter 5; sodium-coupled neutral amino acid transporter 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,709,441 - 41,718,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,709,467 - 41,717,080 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,085,681 - 16,094,898 (-)NCBI
ROS_Cfam_1.0X41,845,558 - 41,854,816 (-)NCBI
UMICH_Zoey_3.1X41,832,556 - 41,841,772 (-)NCBI
UNSW_CanFamBas_1.0X41,820,836 - 41,830,050 (-)NCBI
UU_Cfam_GSD_1.0X41,914,395 - 41,923,619 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC38A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,709,441 - 41,718,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,709,467 - 41,717,080 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,085,681 - 16,094,898 (-)NCBI
ROS_Cfam_1.0X41,845,558 - 41,854,816 (-)NCBI
UMICH_Zoey_3.1X41,832,556 - 41,841,772 (-)NCBI
UNSW_CanFamBas_1.0X41,820,836 - 41,830,050 (-)NCBI
UU_Cfam_GSD_1.0X41,914,395 - 41,923,619 (-)NCBI
SLC38A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX48,458,537 - 48,470,260 (-)EnsemblGRCh38hg38GRCh38
GRCh38X48,458,544 - 48,470,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X48,316,927 - 48,328,648 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,201,871 - 48,213,509 (-)NCBINCBI36hg18NCBI36
Build 34X48,073,181 - 48,084,819NCBI
CeleraX53,337,091 - 53,348,808 (+)NCBI
Cytogenetic MapXp11.23NCBI
HuRefX45,981,068 - 45,992,834 (-)NCBIHuRef
CHM1_1X48,348,162 - 48,359,900 (-)NCBICHM1_1
Slc38a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X8,137,620 - 8,146,418 (+)NCBIGRCm39mm39
GRCm39 EnsemblX8,137,372 - 8,146,418 (+)Ensembl
GRCm38X8,271,381 - 8,280,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,271,133 - 8,280,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,848,518 - 7,857,305 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X7,428,353 - 7,437,133 (+)NCBImm8
CeleraX3,190,181 - 3,198,970 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
Slc38a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X14,213,727 - 14,222,498 (-)NCBI
Rnor_6.0 EnsemblX14,963,921 - 14,972,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X14,963,919 - 14,972,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X15,748,231 - 15,756,314 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,244,421 - 26,253,596 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X26,297,889 - 26,307,057 (-)NCBI
CeleraX14,299,226 - 14,307,991 (-)NCBICelera
Cytogenetic MapXq12NCBI
Slc38a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495554316,089 - 24,668 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495554315,968 - 24,644 (-)NCBIChiLan1.0ChiLan1.0
SLC38A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X48,621,018 - 48,632,682 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,621,018 - 48,632,682 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X40,756,423 - 40,768,327 (-)NCBIMhudiblu_PPA_v0panPan3
Slc38a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,178,875 - 34,200,906 (-)NCBI
SpeTri2.0NW_004936721419,286 - 441,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,585,013 - 42,605,511 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,590,608 - 42,601,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,547,735 - 47,558,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,588,992 - 45,598,771 (-)NCBI
Vero_WHO_p1.0NW_02366607611,040,195 - 11,052,121 (-)NCBI
Slc38a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624893275,906 - 284,883 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 1 6 7 4
Low 2 1 15 6 1 5 1 6 6
Below cutoff 4 6 6 6 5 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022416046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000024336   ⟹   ENSCAFP00000022591
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX41,709,467 - 41,717,080 (-)Ensembl
RefSeq Acc Id: XM_038449931   ⟹   XP_038305859
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X41,845,558 - 41,854,816 (-)NCBI
RefSeq Acc Id: XM_038449932   ⟹   XP_038305860
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X41,845,558 - 41,853,763 (-)NCBI
RefSeq Acc Id: XM_038449933   ⟹   XP_038305861
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X41,845,558 - 41,854,570 (-)NCBI
RefSeq Acc Id: XM_038464932   ⟹   XP_038320860
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX16,085,681 - 16,094,898 (-)NCBI
RefSeq Acc Id: XM_038464933   ⟹   XP_038320861
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX16,085,681 - 16,093,845 (-)NCBI
RefSeq Acc Id: XM_038464934   ⟹   XP_038320862
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX16,085,681 - 16,094,652 (-)NCBI
RefSeq Acc Id: XM_038523369   ⟹   XP_038379297
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X41,832,556 - 41,841,772 (-)NCBI
RefSeq Acc Id: XM_038523370   ⟹   XP_038379298
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X41,832,556 - 41,840,719 (-)NCBI
RefSeq Acc Id: XM_038523371   ⟹   XP_038379299
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X41,832,556 - 41,841,526 (-)NCBI
RefSeq Acc Id: XM_038587337   ⟹   XP_038443265
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X41,914,395 - 41,923,619 (-)NCBI
RefSeq Acc Id: XM_038587338   ⟹   XP_038443266
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X41,914,395 - 41,922,566 (-)NCBI
RefSeq Acc Id: XM_038587339   ⟹   XP_038443267
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X41,914,395 - 41,923,373 (-)NCBI
RefSeq Acc Id: XM_038651853   ⟹   XP_038507781
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X41,820,836 - 41,830,050 (-)NCBI
RefSeq Acc Id: XM_038651854   ⟹   XP_038507782
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X41,820,836 - 41,828,997 (-)NCBI
RefSeq Acc Id: XM_038651855   ⟹   XP_038507783
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X41,820,836 - 41,829,804 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000022591   ⟸   ENSCAFT00000024336
RefSeq Acc Id: XP_038379297   ⟸   XM_038523369
RefSeq Acc Id: XP_038379299   ⟸   XM_038523371
RefSeq Acc Id: XP_038379298   ⟸   XM_038523370
RefSeq Acc Id: XP_038507781   ⟸   XM_038651853
RefSeq Acc Id: XP_038507783   ⟸   XM_038651855
RefSeq Acc Id: XP_038507782   ⟸   XM_038651854
RefSeq Acc Id: XP_038305859   ⟸   XM_038449931
RefSeq Acc Id: XP_038305861   ⟸   XM_038449933
RefSeq Acc Id: XP_038305860   ⟸   XM_038449932
RefSeq Acc Id: XP_038320860   ⟸   XM_038464932
RefSeq Acc Id: XP_038320862   ⟸   XM_038464934
RefSeq Acc Id: XP_038320861   ⟸   XM_038464933
RefSeq Acc Id: XP_038443265   ⟸   XM_038587337
RefSeq Acc Id: XP_038443267   ⟸   XM_038587339
RefSeq Acc Id: XP_038443266   ⟸   XM_038587338
Protein Domains
Aa_trans

Promoters
RGD ID:13689308
Promoter ID:EPDNEW_C7377
Type:initiation region
Name:SLC38A5_1
Description:solute carrier family 38 member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X41,715,346 - 41,715,406EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015326 Ensembl, ENTREZGENE
NCBI Gene SLC38A5 ENTREZGENE
VGNC ID VGNC:54601 ENTREZGENE