MIR30C-1 (microRNA mir-30c-1) - Rat Genome Database

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Gene: MIR30C-1 (microRNA mir-30c-1) Canis lupus familiaris
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Symbol: MIR30C-1 (Ensembl: MIR30C1)
Name: microRNA mir-30c-1 (Ensembl:microRNA 30c-1)
RGD ID: 12195176
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-30c-1; microRNA 30c-1
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,280,050 - 2,280,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,280,039 - 2,280,121 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,538,350 - 2,538,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,369,429 - 2,369,489 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,369,418 - 2,369,500 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,274,894 - 2,274,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,334,967 - 2,335,027 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,350,801 - 2,350,861 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR30C-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,280,050 - 2,280,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,280,039 - 2,280,121 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,538,350 - 2,538,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,369,429 - 2,369,489 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,369,418 - 2,369,500 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,274,894 - 2,274,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,334,967 - 2,335,027 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,350,801 - 2,350,861 (-)NCBIUU_Cfam_GSD_1.0
MIR30C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,757,284 - 40,757,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,757,284 - 40,757,372 (+)EnsemblGRCh38hg38GRCh38
GRCh37141,222,956 - 41,223,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,995,542 - 40,995,630 (+)NCBINCBI36Build 36hg18NCBI36
Celera139,505,156 - 39,505,244 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,341,077 - 39,341,165 (+)NCBIHuRef
CHM1_1141,338,787 - 41,338,875 (+)NCBICHM1_1
T2T-CHM13v2.0140,626,494 - 40,626,582 (+)NCBIT2T-CHM13v2.0
Mir30c-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,626,731 - 120,626,819 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,626,731 - 120,626,819 (-)EnsemblGRCm39 Ensembl
GRCm384120,769,534 - 120,769,622 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,769,534 - 120,769,622 (-)EnsemblGRCm38mm10GRCm38
MGSCv374120,442,139 - 120,442,227 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera4119,487,732 - 119,487,820 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map456.52NCBI
Mir30c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,634,455 - 139,634,543 (-)NCBIGRCr8
mRatBN7.25134,349,237 - 134,349,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,349,237 - 134,349,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,076,728 - 137,076,816 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,833,199 - 138,833,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,853,814 - 138,853,902 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,699,877 - 139,699,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,699,877 - 139,699,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,494,757 - 143,494,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5132,903,568 - 132,903,656 (-)NCBICelera
Cytogenetic Map5q36NCBI
MIR30C-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6170,426,781 - 170,426,860 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16170,426,781 - 170,426,860 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26157,473,595 - 157,473,674 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

ectoderm
nervous system
1 1

Sequence


Ensembl Acc Id: ENSCAFT00000039933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl152,280,039 - 2,280,121 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845016702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl152,369,418 - 2,369,500 (-)Ensembl
RefSeq Acc Id: NR_049255
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1152,280,050 - 2,280,110 (-)NCBI
Dog10K_Boxer_Tasha152,538,350 - 2,538,410 (-)NCBI
ROS_Cfam_1.0152,369,429 - 2,369,489 (-)NCBI
UMICH_Zoey_3.1152,274,894 - 2,274,954 (-)NCBI
UNSW_CanFamBas_1.0152,334,967 - 2,335,027 (-)NCBI
UU_Cfam_GSD_1.0152,350,801 - 2,350,861 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025650 Ensembl
  ENSCAFG00845009474 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845016702 ENTREZGENE
miRBase MI0008024 ENTREZGENE
NCBI Gene MIR30C-1 ENTREZGENE
RNAcentral URS00000980C2 RNACentral
  URS00007E34CF RNACentral
  URS0000D4F267 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR30C-1  microRNA mir-30c-1    microRNA 30c-1  Symbol and/or name change 5135510 APPROVED