SDK1 (sidekick cell adhesion molecule 1) - Rat Genome Database

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Gene: SDK1 (sidekick cell adhesion molecule 1) Canis lupus familiaris
Analyze
Symbol: SDK1
Name: sidekick cell adhesion molecule 1
RGD ID: 12192800
Description: ENCODES a protein that exhibits cell-cell adhesion mediator activity (inferred); INVOLVED IN behavioral response to cocaine (ortholog); regulation of dendritic spine development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN axon (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein sidekick-1; sidekick homolog 1, cell adhesion molecule
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1613,131,500 - 13,674,280 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl613,134,817 - 13,675,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,602,937 - 15,152,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0613,268,478 - 13,808,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl613,268,467 - 13,921,851 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1613,078,841 - 13,615,391 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0613,010,926 - 13,547,524 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0613,288,420 - 13,826,019 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon  (IEA)
membrane  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SDK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1613,131,500 - 13,674,280 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl613,134,817 - 13,675,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,602,937 - 15,152,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0613,268,478 - 13,808,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl613,268,467 - 13,921,851 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1613,078,841 - 13,615,391 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0613,010,926 - 13,547,524 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0613,288,420 - 13,826,019 (-)NCBIUU_Cfam_GSD_1.0
SDK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3873,301,252 - 4,269,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl73,301,252 - 4,269,000 (+)EnsemblGRCh38hg38GRCh38
GRCh3773,340,884 - 4,308,632 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3673,307,606 - 4,275,158 (+)NCBINCBI36Build 36hg18NCBI36
Build 3473,114,320 - 4,078,475NCBI
Celera73,309,584 - 4,277,798 (+)NCBICelera
Cytogenetic Map7p22.2NCBI
HuRef73,262,568 - 4,229,763 (+)NCBIHuRef
CHM1_173,341,487 - 4,308,248 (+)NCBICHM1_1
T2T-CHM13v2.073,415,529 - 4,385,763 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v273,388,840 - 4,355,031 (+)NCBI
Sdk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395141,227,252 - 142,201,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5141,227,245 - 142,201,341 (+)EnsemblGRCm39 Ensembl
GRCm385141,241,497 - 142,215,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5141,241,490 - 142,215,586 (+)EnsemblGRCm38mm10GRCm38
MGSCv375141,717,488 - 142,689,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365142,109,261 - 142,465,668 (+)NCBIMGSCv36mm8
Celera5138,300,894 - 139,268,439 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.81NCBI
Sdk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,491,430 - 18,477,914 (-)NCBIGRCr8
mRatBN7.21212,378,074 - 13,363,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1212,380,524 - 13,363,976 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01214,445,798 - 15,443,442 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,449,010 - 15,098,786 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01216,470,370 - 16,752,222 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,804,028 - 13,799,554 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1214,152,912 - 14,790,485 (-)NCBICelera
Cytogenetic Map12q11NCBI
Sdk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546011,278,136 - 12,148,619 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546011,278,136 - 12,148,619 (-)NCBIChiLan1.0ChiLan1.0
SDK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v268,254,585 - 9,218,325 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1756,579,310 - 57,540,425 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v073,557,241 - 4,521,234 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.174,274,088 - 4,588,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl73,948,607 - 4,584,591 (+)Ensemblpanpan1.1panPan2
Sdk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344141,438,428 - 141,787,050 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367651,429,398 - 1,778,148 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367651,429,422 - 1,667,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl32,814,547 - 3,324,798 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.132,814,418 - 3,327,838 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.233,470,913 - 3,825,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12817,354,106 - 18,316,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2817,351,241 - 17,998,205 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660903,581,314 - 4,559,256 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474028,819,502 - 29,764,338 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474028,819,618 - 29,764,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SDK1
6013 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 6 1 6 8
Low 4 4 9 5 6 6 10 6
Below cutoff 1 7 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000025755   ⟹   ENSCAFP00000023921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl613,134,817 - 13,675,016 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000064877   ⟹   ENSCAFP00000048724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl613,134,817 - 13,674,901 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000066304   ⟹   ENSCAFP00000057018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl613,134,817 - 13,674,257 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068539   ⟹   ENSCAFP00000061791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl613,134,817 - 13,378,588 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845025924   ⟹   ENSCAFP00845020438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl613,268,467 - 13,921,851 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026022   ⟹   ENSCAFP00845020516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl613,268,467 - 13,921,851 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026152   ⟹   ENSCAFP00845020615
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl613,268,467 - 13,839,887 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026313   ⟹   ENSCAFP00845020746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl613,271,795 - 13,809,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026439   ⟹   ENSCAFP00845020836
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl613,271,795 - 13,809,532 (-)Ensembl
RefSeq Acc Id: XM_005621149   ⟹   XP_005621206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,655,770 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,133,714 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022419772   ⟹   XP_022275480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,674,280 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,152,159 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022419773   ⟹   XP_022275481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,674,280 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,152,159 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022419775   ⟹   XP_022275483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,663,424 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,141,372 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022419776   ⟹   XP_022275484
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,663,412 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,141,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022419777   ⟹   XP_022275485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1613,131,500 - 13,655,585 (-)NCBI
Dog10K_Boxer_Tasha614,602,937 - 15,133,528 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038478340   ⟹   XP_038334268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1613,078,841 - 13,615,391 (-)NCBI
RefSeq Acc Id: XM_038539586   ⟹   XP_038395514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,826,019 (-)NCBI
RefSeq Acc Id: XM_038539587   ⟹   XP_038395515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,826,019 (-)NCBI
RefSeq Acc Id: XM_038539588   ⟹   XP_038395516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,815,223 (-)NCBI
RefSeq Acc Id: XM_038539589   ⟹   XP_038395517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,815,213 (-)NCBI
RefSeq Acc Id: XM_038539590   ⟹   XP_038395518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,825,988 (-)NCBI
RefSeq Acc Id: XM_038539591   ⟹   XP_038395519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,807,517 (-)NCBI
RefSeq Acc Id: XM_038539592   ⟹   XP_038395520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,807,331 (-)NCBI
RefSeq Acc Id: XM_038539593   ⟹   XP_038395521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,665,775 (-)NCBI
RefSeq Acc Id: XM_038539594   ⟹   XP_038395522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,807,497 (-)NCBI
RefSeq Acc Id: XM_038539595   ⟹   XP_038395523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,506,340 (-)NCBI
RefSeq Acc Id: XM_038539596   ⟹   XP_038395524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,506,340 (-)NCBI
RefSeq Acc Id: XM_038539597   ⟹   XP_038395525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0613,288,420 - 13,505,136 (-)NCBI
RefSeq Acc Id: XM_038541146   ⟹   XP_038397074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 15,152,128 (-)NCBI
RefSeq Acc Id: XM_038541168   ⟹   XP_038397096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 14,979,372 (-)NCBI
RefSeq Acc Id: XM_038541170   ⟹   XP_038397098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 15,133,694 (-)NCBI
RefSeq Acc Id: XM_038541171   ⟹   XP_038397099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 14,820,065 (-)NCBI
RefSeq Acc Id: XM_038541172   ⟹   XP_038397100
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 14,820,065 (-)NCBI
RefSeq Acc Id: XM_038541173   ⟹   XP_038397101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha614,602,937 - 14,818,861 (-)NCBI
RefSeq Acc Id: XM_038603669   ⟹   XP_038459597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,547,524 (-)NCBI
RefSeq Acc Id: XM_038603670   ⟹   XP_038459598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,547,524 (-)NCBI
RefSeq Acc Id: XM_038603671   ⟹   XP_038459599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,536,733 (-)NCBI
RefSeq Acc Id: XM_038603672   ⟹   XP_038459600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,536,723 (-)NCBI
RefSeq Acc Id: XM_038603673   ⟹   XP_038459601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,547,493 (-)NCBI
RefSeq Acc Id: XM_038603674   ⟹   XP_038459602
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,529,073 (-)NCBI
RefSeq Acc Id: XM_038603675   ⟹   XP_038459603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,528,887 (-)NCBI
RefSeq Acc Id: XM_038603676   ⟹   XP_038459604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,387,359 (-)NCBI
RefSeq Acc Id: XM_038603677   ⟹   XP_038459605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,529,053 (-)NCBI
RefSeq Acc Id: XM_038603678   ⟹   XP_038459606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,227,818 (-)NCBI
RefSeq Acc Id: XM_038603679   ⟹   XP_038459607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,227,818 (-)NCBI
RefSeq Acc Id: XM_038603680   ⟹   XP_038459608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0613,010,926 - 13,226,614 (-)NCBI
RefSeq Acc Id: XM_038668379   ⟹   XP_038524307
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,808,734 (-)NCBI
RefSeq Acc Id: XM_038668380   ⟹   XP_038524308
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,808,734 (-)NCBI
RefSeq Acc Id: XM_038668381   ⟹   XP_038524309
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,797,703 (-)NCBI
RefSeq Acc Id: XM_038668382   ⟹   XP_038524310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,797,693 (-)NCBI
RefSeq Acc Id: XM_038668383   ⟹   XP_038524311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,808,703 (-)NCBI
RefSeq Acc Id: XM_038668384   ⟹   XP_038524312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,790,078 (-)NCBI
RefSeq Acc Id: XM_038668385   ⟹   XP_038524313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,789,892 (-)NCBI
RefSeq Acc Id: XM_038668386   ⟹   XP_038524314
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,645,183 (-)NCBI
RefSeq Acc Id: XM_038668387   ⟹   XP_038524315
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,790,058 (-)NCBI
RefSeq Acc Id: XM_038668388   ⟹   XP_038524316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,486,053 (-)NCBI
RefSeq Acc Id: XM_038668389   ⟹   XP_038524317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,486,052 (-)NCBI
RefSeq Acc Id: XM_038668390   ⟹   XP_038524318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0613,268,478 - 13,484,848 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005621206 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275480 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275481 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275483 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275484 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275485 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334268 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395516 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395517 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395518 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395519 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395520 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395521 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395522 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395523 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395524 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397100 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524307 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524308 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524309 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524311 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524314 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524318 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023921.6
  ENSCAFP00000048724.2
  ENSCAFP00000057018.2
  ENSCAFP00000061791.2
  ENSCAFP00000068378.1
  ENSCAFP00000075043.1
  ENSCAFP00030020085.1
  ENSCAFP00030021122.1
  ENSCAFP00845020438
  ENSCAFP00845020438.1
  ENSCAFP00845020516.1
  ENSCAFP00845020615.1
  ENSCAFP00845020746.1
  ENSCAFP00845020836.1
Reference Protein Sequences
RefSeq Acc Id: XP_005621206   ⟸   XM_005621149
- Peptide Label: isoform X4
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275480   ⟸   XM_022419772
- Peptide Label: isoform X1
- UniProtKB: A0A8P0T1I6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275481   ⟸   XM_022419773
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PAR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275483   ⟸   XM_022419775
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275484   ⟸   XM_022419776
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275485   ⟸   XM_022419777
- Peptide Label: isoform X5
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000048724   ⟸   ENSCAFT00000064877
RefSeq Acc Id: ENSCAFP00000023921   ⟸   ENSCAFT00000025755
RefSeq Acc Id: ENSCAFP00000061791   ⟸   ENSCAFT00000068539
RefSeq Acc Id: ENSCAFP00000057018   ⟸   ENSCAFT00000066304
RefSeq Acc Id: XP_038334268   ⟸   XM_038478340
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459597   ⟸   XM_038603669
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459598   ⟸   XM_038603670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038459601   ⟸   XM_038603673
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459599   ⟸   XM_038603671
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459600   ⟸   XM_038603672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459602   ⟸   XM_038603674
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038459605   ⟸   XM_038603677
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038459603   ⟸   XM_038603675
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038459604   ⟸   XM_038603676
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038459607   ⟸   XM_038603679
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038459606   ⟸   XM_038603678
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038459608   ⟸   XM_038603680
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038524307   ⟸   XM_038668379
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NXV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524308   ⟸   XM_038668380
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PAR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524311   ⟸   XM_038668383
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524309   ⟸   XM_038668381
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524310   ⟸   XM_038668382
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524312   ⟸   XM_038668384
- Peptide Label: isoform X4
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524315   ⟸   XM_038668387
- Peptide Label: isoform X7
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524313   ⟸   XM_038668385
- Peptide Label: isoform X5
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524314   ⟸   XM_038668386
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524316   ⟸   XM_038668388
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038524317   ⟸   XM_038668389
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038524318   ⟸   XM_038668390
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038397074   ⟸   XM_038541146
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397098   ⟸   XM_038541170
- Peptide Label: isoform X7
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397096   ⟸   XM_038541168
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397100   ⟸   XM_038541172
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038397099   ⟸   XM_038541171
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038397101   ⟸   XM_038541173
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038395514   ⟸   XM_038539586
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NXV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395515   ⟸   XM_038539587
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PAR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395518   ⟸   XM_038539590
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395516   ⟸   XM_038539588
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395517   ⟸   XM_038539589
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395519   ⟸   XM_038539591
- Peptide Label: isoform X4
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395522   ⟸   XM_038539594
- Peptide Label: isoform X7
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395520   ⟸   XM_038539592
- Peptide Label: isoform X5
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395521   ⟸   XM_038539593
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395524   ⟸   XM_038539596
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038395523   ⟸   XM_038539595
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038395525   ⟸   XM_038539597
- Peptide Label: isoform X9
RefSeq Acc Id: ENSCAFP00845020746   ⟸   ENSCAFT00845026313
RefSeq Acc Id: ENSCAFP00845020615   ⟸   ENSCAFT00845026152
RefSeq Acc Id: ENSCAFP00845020836   ⟸   ENSCAFT00845026439
RefSeq Acc Id: ENSCAFP00845020438   ⟸   ENSCAFT00845025924
RefSeq Acc Id: ENSCAFP00845020516   ⟸   ENSCAFT00845026022
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016192 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008753 UniProtKB/TrEMBL
  ENSCAFG00845014480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025755.6 UniProtKB/TrEMBL
  ENSCAFT00000064877.2 UniProtKB/TrEMBL
  ENSCAFT00000066304.2 UniProtKB/TrEMBL
  ENSCAFT00000068539.2 UniProtKB/TrEMBL
  ENSCAFT00000097329.1 UniProtKB/TrEMBL
  ENSCAFT00000101386.1 UniProtKB/TrEMBL
  ENSCAFT00030023023.1 UniProtKB/TrEMBL
  ENSCAFT00030024218.1 UniProtKB/TrEMBL
  ENSCAFT00845025924 ENTREZGENE
  ENSCAFT00845025924.1 UniProtKB/TrEMBL
  ENSCAFT00845026022.1 UniProtKB/TrEMBL
  ENSCAFT00845026152.1 UniProtKB/TrEMBL
  ENSCAFT00845026313.1 UniProtKB/TrEMBL
  ENSCAFT00845026439.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene SDK1 ENTREZGENE
PANTHER FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0N1M6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0N6R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NP21_CANLF UniProtKB/TrEMBL
  A0A8I3NQ02_CANLF UniProtKB/TrEMBL
  A0A8I3NXV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RYB5_CANLF UniProtKB/TrEMBL
  A0A8I3S0Y3_CANLF UniProtKB/TrEMBL
  A0A8P0PAR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SKP7_CANLF UniProtKB/TrEMBL
  A0A8P0T1I6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T958_CANLF UniProtKB/TrEMBL
  A0A8P0TK46_CANLF UniProtKB/TrEMBL
  A0A8P0TTX2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45953 ENTREZGENE