BST2 (bone marrow stromal cell antigen 2) - Rat Genome Database

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Gene: BST2 (bone marrow stromal cell antigen 2) Canis lupus familiaris
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Symbol: BST2
Name: bone marrow stromal cell antigen 2
RGD ID: 12192312
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of cell migration (ortholog); negative regulation of intracellular transport of viral material (ortholog); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); brain glioma (ortholog); chikungunya (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: bone marrow stromal antigen 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,383,757 - 45,387,420 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,383,915 - 45,387,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,297,396 - 45,301,618 (+)NCBI
ROS_Cfam_1.02045,870,847 - 45,875,081 (+)NCBI
UMICH_Zoey_3.12045,107,273 - 45,111,493 (+)NCBI
UNSW_CanFamBas_1.02045,517,170 - 45,521,565 (+)NCBI
UU_Cfam_GSD_1.02045,793,007 - 45,797,236 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30332780  


Genomics

Comparative Map Data
BST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,383,757 - 45,387,420 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,383,915 - 45,387,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,297,396 - 45,301,618 (+)NCBI
ROS_Cfam_1.02045,870,847 - 45,875,081 (+)NCBI
UMICH_Zoey_3.12045,107,273 - 45,111,493 (+)NCBI
UNSW_CanFamBas_1.02045,517,170 - 45,521,565 (+)NCBI
UU_Cfam_GSD_1.02045,793,007 - 45,797,236 (+)NCBI
BST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,402,939 - 17,405,630 (-)EnsemblGRCh38hg38GRCh38
GRCh381917,402,939 - 17,405,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,513,748 - 17,516,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,374,755 - 17,377,384 (-)NCBINCBI36hg18NCBI36
Build 341917,374,755 - 17,377,384NCBI
Celera1917,415,480 - 17,418,112 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,079,843 - 17,082,475 (-)NCBIHuRef
CHM1_11917,513,253 - 17,515,885 (-)NCBICHM1_1
Bst2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,986,899 - 71,990,116 (-)NCBIGRCm39mm39
GRCm39 Ensembl871,986,899 - 71,990,100 (-)Ensembl
GRCm38871,534,255 - 71,537,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,534,255 - 71,537,456 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,058,158 - 74,061,336 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,463,248 - 74,466,427 (-)NCBImm8
Celera874,044,534 - 74,047,712 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
Bst2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,217,404 - 18,220,979 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1618,217,407 - 18,220,979 (-)Ensembl
Rnor_6.01619,938,781 - 19,942,353 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,938,784 - 19,942,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,800,345 - 19,803,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,698,545 - 18,701,768 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,698,545 - 18,701,766 (-)NCBI
Celera1618,422,354 - 18,425,936 (-)NCBICelera
Cytogenetic Map16p14NCBI
BST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,863,991 - 17,866,728 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,863,991 - 17,866,728 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,890,257 - 16,892,989 (-)NCBIMhudiblu_PPA_v0panPan3
Ccdc194
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,948,837 - 203,952,227 (+)NCBI
SpeTri2.0NW_0049365963,492,733 - 3,501,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,305,252 - 60,309,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,305,306 - 60,308,295 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213111,049,463 - 111,049,577 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,900,396 - 15,903,072 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl615,900,011 - 15,903,060 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660743,533,612 - 3,536,289 (+)NCBIVero_WHO_p1.0
Bst2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908588,925 - 591,033 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 15 4 6 4 2 6 5 6
Low 3 5 7 2 2 4 6 6 8 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000043275   ⟹   ENSCAFP00000037174
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2045,383,915 - 45,387,178 (+)Ensembl
RefSeq Acc Id: XM_038428239   ⟹   XP_038284167
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02045,870,847 - 45,875,081 (+)NCBI
RefSeq Acc Id: XM_038503884   ⟹   XP_038359812
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12045,107,273 - 45,111,493 (+)NCBI
RefSeq Acc Id: XM_038566909   ⟹   XP_038422837
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02045,793,007 - 45,797,236 (+)NCBI
RefSeq Acc Id: XM_038631062   ⟹   XP_038486990
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02045,517,170 - 45,521,565 (+)NCBI
RefSeq Acc Id: XM_860510   ⟹   XP_865603
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12045,383,757 - 45,387,420 (+)NCBI
Dog10K_Boxer_Tasha2045,297,396 - 45,301,618 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038284167 (Get FASTA)   NCBI Sequence Viewer  
  XP_038359812 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422837 (Get FASTA)   NCBI Sequence Viewer  
  XP_038486990 (Get FASTA)   NCBI Sequence Viewer  
  XP_865603 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_865603   ⟸   XM_860510
- UniProtKB: J9NVI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000037174   ⟸   ENSCAFT00000043275
RefSeq Acc Id: XP_038359812   ⟸   XM_038503884
RefSeq Acc Id: XP_038486990   ⟸   XM_038631062
RefSeq Acc Id: XP_038284167   ⟸   XM_038428239
RefSeq Acc Id: XP_038422837   ⟸   XM_038566909

Promoters
RGD ID:13686957
Promoter ID:EPDNEW_C5025
Type:multiple initiation site
Name:BST2_1
Description:bone marrow stromal cell antigen 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12045,383,897 - 45,383,957EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031353 Ensembl
NCBI Gene BST2 ENTREZGENE
UniProt J9NVI2 ENTREZGENE
VGNC ID VGNC:38542 ENTREZGENE