MIR451 (microRNA mir-451) - Rat Genome Database

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Gene: MIR451 (microRNA mir-451) Canis lupus familiaris
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Symbol: MIR451 (Ensembl: MIR451A)
Name: microRNA mir-451 (Ensembl:microRNA 451a)
RGD ID: 12191278
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-451; microRNA 451
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,030,863 - 43,030,931 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,030,863 - 43,030,931 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,186,005 - 42,186,073 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,848,583 - 43,848,651 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,848,583 - 43,848,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,632,123 - 42,632,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,924,146 - 42,924,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,002,786 - 43,002,854 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18215311  


Genomics

Comparative Map Data
MIR451
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,030,863 - 43,030,931 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,030,863 - 43,030,931 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,186,005 - 42,186,073 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,848,583 - 43,848,651 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,848,583 - 43,848,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,632,123 - 42,632,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,924,146 - 42,924,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,002,786 - 43,002,854 (-)NCBIUU_Cfam_GSD_1.0
MIR451A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,861,369 - 28,861,440 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,861,369 - 28,861,440 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,188,387 - 27,188,458 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,212,512 - 24,212,583 (-)NCBINCBI36Build 36hg18NCBI36
Celera1724,047,811 - 24,047,882 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,396,677 - 23,396,748 (-)NCBIHuRef
CHM1_11727,250,901 - 27,250,972 (-)NCBICHM1_1
T2T-CHM13v2.01729,804,142 - 29,804,213 (-)NCBIT2T-CHM13v2.0
Mir451a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,963,996 - 77,964,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,963,996 - 77,964,067 (+)EnsemblGRCm39 Ensembl
GRCm381178,073,170 - 78,073,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,073,170 - 78,073,241 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,886,672 - 77,886,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1185,572,772 - 85,572,843 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Mir451a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,459,569 - 63,459,640 (+)NCBIGRCr8
mRatBN7.21062,961,520 - 62,961,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,961,520 - 62,961,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,592,694 - 67,592,765 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,098,058 - 67,098,129 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,569,632 - 62,569,703 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,291,204 - 65,291,275 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,291,204 - 65,291,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,340,853 - 66,340,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1061,939,610 - 61,939,681 (+)NCBICelera
Cytogenetic Map10q25NCBI
MIR451
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,088,808 - 45,088,872 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,088,808 - 45,088,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,177,114 - 47,177,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5
Low 2 17 3 1 3 5 9
Below cutoff 3 5 5 3 3 6 6 7 8 1 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000039994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl943,030,863 - 43,030,931 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845016023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl943,848,583 - 43,848,651 (-)Ensembl
RefSeq Acc Id: NR_049459
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1943,030,863 - 43,030,931 (-)NCBI
Dog10K_Boxer_Tasha942,186,005 - 42,186,073 (-)NCBI
ROS_Cfam_1.0943,848,583 - 43,848,651 (-)NCBI
UMICH_Zoey_3.1942,632,123 - 42,632,191 (-)NCBI
UNSW_CanFamBas_1.0942,924,146 - 42,924,214 (-)NCBI
UU_Cfam_GSD_1.0943,002,786 - 43,002,854 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025711 Ensembl
  ENSCAFG00845009093 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845016023 ENTREZGENE
miRBase MI0010367 ENTREZGENE
NCBI Gene MIR451 ENTREZGENE
RNAcentral URS00002E857A RNACentral
  URS00007E4F6D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR451  microRNA mir-451    microRNA 451  Symbol and/or name change 5135510 APPROVED