BTAF1 (B-TFIID TATA-box binding protein associated factor 1) - Rat Genome Database

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Gene: BTAF1 (B-TFIID TATA-box binding protein associated factor 1) Canis lupus familiaris
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Symbol: BTAF1
Name: B-TFIID TATA-box binding protein associated factor 1
RGD ID: 12189810
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATP-dependent activity, acting on DNA (inferred); INVOLVED IN chromatin remodeling (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae); TATA-binding protein-associated factor 172
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,415,399 - 6,510,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,415,513 - 6,521,723 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha286,591,413 - 6,686,691 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,669,523 - 6,764,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,669,352 - 6,764,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,395,736 - 6,490,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,429,022 - 6,524,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,593,877 - 6,689,184 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BTAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,415,399 - 6,510,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,415,513 - 6,521,723 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha286,591,413 - 6,686,691 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,669,523 - 6,764,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,669,352 - 6,764,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,395,736 - 6,490,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,429,022 - 6,524,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,593,877 - 6,689,184 (+)NCBIUU_Cfam_GSD_1.0
BTAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381091,923,770 - 92,031,437 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1091,923,770 - 92,031,437 (+)EnsemblGRCh38hg38GRCh38
GRCh371093,683,527 - 93,791,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361093,673,716 - 93,780,062 (+)NCBINCBI36Build 36hg18NCBI36
Build 341093,673,715 - 93,780,058NCBI
Celera1087,427,411 - 87,534,594 (+)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1087,312,494 - 87,418,817 (+)NCBIHuRef
CHM1_11093,965,490 - 94,071,828 (+)NCBICHM1_1
T2T-CHM13v2.01092,805,881 - 92,913,817 (+)NCBIT2T-CHM13v2.0
Btaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,903,479 - 36,991,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,903,479 - 36,990,152 (+)EnsemblGRCm39 Ensembl
GRCm381936,926,079 - 37,014,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1936,926,079 - 37,012,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv371937,000,569 - 37,088,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361936,991,223 - 37,079,201 (+)NCBIMGSCv36mm8
Celera1937,701,431 - 37,790,204 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.02NCBI
Btaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,065,728 - 244,156,457 (+)NCBIGRCr8
mRatBN7.21234,653,219 - 234,743,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,653,156 - 234,743,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,057,912 - 243,133,573 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01249,985,875 - 250,061,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,824,083 - 242,899,534 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01255,564,247 - 255,654,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,564,409 - 255,654,932 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01263,040,091 - 263,130,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,212,431 - 241,287,889 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1231,760,769 - 231,836,199 (+)NCBICelera
Cytogenetic Map1q53NCBI
Btaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,241,792 - 1,337,918 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554251,239,640 - 1,350,327 (-)NCBIChiLan1.0ChiLan1.0
BTAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28103,960,535 - 104,068,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110103,965,850 - 104,074,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01088,671,438 - 88,778,452 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11092,193,094 - 92,298,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1092,193,094 - 92,298,865 (+)Ensemblpanpan1.1panPan2
Btaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,995,303 - 41,088,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,627,900 - 2,721,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,629,248 - 2,721,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,530,787 - 103,642,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114103,530,746 - 103,641,082 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214113,043,937 - 113,154,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,199,462 - 85,306,352 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl985,236,067 - 85,306,935 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604845,930,020 - 46,036,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247373,215,679 - 3,330,623 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247373,215,644 - 3,331,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BTAF1
873 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 2 8 1
Low 5 5 19 6 6 6 6 6 10 9 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000011817   ⟹   ENSCAFP00000010955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl286,415,513 - 6,521,723 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074705   ⟹   ENSCAFP00000048971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl286,415,513 - 6,521,723 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052847   ⟹   ENSCAFP00845041489
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl286,669,352 - 6,764,923 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052861   ⟹   ENSCAFP00845041504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl286,669,352 - 6,764,923 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052948   ⟹   ENSCAFP00845041569
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl286,669,366 - 6,764,932 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052961   ⟹   ENSCAFP00845041581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl286,669,641 - 6,764,863 (+)Ensembl
RefSeq Acc Id: XM_003639984   ⟹   XP_003640032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1286,415,399 - 6,510,715 (+)NCBI
Dog10K_Boxer_Tasha286,591,413 - 6,686,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038439926   ⟹   XP_038295854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0286,669,523 - 6,764,934 (+)NCBI
RefSeq Acc Id: XM_038514539   ⟹   XP_038370467
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1286,395,736 - 6,490,834 (+)NCBI
RefSeq Acc Id: XM_038578185   ⟹   XP_038434113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0286,593,877 - 6,689,184 (+)NCBI
RefSeq Acc Id: XM_038642353   ⟹   XP_038498281
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0286,429,022 - 6,524,489 (+)NCBI
RefSeq Acc Id: XP_003640032   ⟸   XM_003639984
- UniProtKB: A0A8C0NHA6 (UniProtKB/TrEMBL),   A0A8I3Q2K3 (UniProtKB/TrEMBL),   A0A8C0JKG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000048971   ⟸   ENSCAFT00000074705
RefSeq Acc Id: ENSCAFP00000010955   ⟸   ENSCAFT00000011817
RefSeq Acc Id: XP_038370467   ⟸   XM_038514539
RefSeq Acc Id: XP_038498281   ⟸   XM_038642353
RefSeq Acc Id: XP_038295854   ⟸   XM_038439926
- UniProtKB: A0A8C0NHA6 (UniProtKB/TrEMBL),   A0A8I3Q2K3 (UniProtKB/TrEMBL),   A0A8C0JKG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434113   ⟸   XM_038578185
- UniProtKB: A0A8C0JKG7 (UniProtKB/TrEMBL),   A0A8C0NHA6 (UniProtKB/TrEMBL),   A0A8I3Q2K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041581   ⟸   ENSCAFT00845052961
RefSeq Acc Id: ENSCAFP00845041489   ⟸   ENSCAFT00845052847
RefSeq Acc Id: ENSCAFP00845041569   ⟸   ENSCAFT00845052948
RefSeq Acc Id: ENSCAFP00845041504   ⟸   ENSCAFT00845052861
Promoters
RGD ID:13688261
Promoter ID:EPDNEW_C6329
Type:multiple initiation site
Name:BTAF1_1
Description:B-TFIID TATA-box binding protein associated factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1286,415,448 - 6,415,508EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007355 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014961 UniProtKB/TrEMBL
  ENSCAFG00040018464 UniProtKB/TrEMBL
  ENSCAFG00845029828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011817.5 UniProtKB/TrEMBL
  ENSCAFT00000074705.2 UniProtKB/TrEMBL
  ENSCAFT00000094827.1 UniProtKB/TrEMBL
  ENSCAFT00000099309.1 UniProtKB/TrEMBL
  ENSCAFT00030028710.1 UniProtKB/TrEMBL
  ENSCAFT00030028972.1 UniProtKB/TrEMBL
  ENSCAFT00030029293.1 UniProtKB/TrEMBL
  ENSCAFT00040035137.1 UniProtKB/TrEMBL
  ENSCAFT00040035386.1 UniProtKB/TrEMBL
  ENSCAFT00845052847 ENTREZGENE
  ENSCAFT00845052847.1 UniProtKB/TrEMBL
  ENSCAFT00845052861.1 UniProtKB/TrEMBL
  ENSCAFT00845052948.1 UniProtKB/TrEMBL
  ENSCAFT00845052961.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Mot1 UniProtKB/TrEMBL
  Mot1_ATP-bd UniProtKB/TrEMBL
  Mot1_central_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report cfa:100855703 UniProtKB/TrEMBL
NCBI Gene BTAF1 ENTREZGENE
PANTHER PTHR36498 UniProtKB/TrEMBL
  TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 UniProtKB/TrEMBL
Pfam DUF3535 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0JKG7 ENTREZGENE
  A0A8C0NHA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RL33_CANLF UniProtKB/TrEMBL
  A0A8C0RL78_CANLF UniProtKB/TrEMBL
  A0A8I3Q2K3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q4Q3_CANLF UniProtKB/TrEMBL
  A0A8I3Q7T0_CANLF UniProtKB/TrEMBL
  A0A8I3Q7U2_CANLF UniProtKB/TrEMBL
  A0A8P0PM19_CANLF UniProtKB/TrEMBL
  A0A8P0TR59_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38544 ENTREZGENE