PCNA (proliferating cell nuclear antigen) - Rat Genome Database

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Gene: PCNA (proliferating cell nuclear antigen) Canis lupus familiaris
Analyze
Symbol: PCNA
Name: proliferating cell nuclear antigen
RGD ID: 12188358
Description: ENCODES a protein that exhibits enzyme binding (ortholog); estrogen receptor binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to UV (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Ataxia Telangiectasia Like Disorder (ortholog); Ataxia-Telangiectasia-Like Disorder 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PCNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,478,774 - 16,485,992 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,478,769 - 16,484,992 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,301,671 - 16,308,866 (+)NCBI
ROS_Cfam_1.02416,892,157 - 16,899,336 (+)NCBI
UMICH_Zoey_3.12416,489,199 - 16,496,352 (+)NCBI
UNSW_CanFamBas_1.02416,596,221 - 16,603,283 (+)NCBI
UU_Cfam_GSD_1.02416,929,896 - 16,937,077 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16145209   PMID:20022446  


Genomics

Comparative Map Data
PCNA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,478,774 - 16,485,992 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,478,769 - 16,484,992 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,301,671 - 16,308,866 (+)NCBI
ROS_Cfam_1.02416,892,157 - 16,899,336 (+)NCBI
UMICH_Zoey_3.12416,489,199 - 16,496,352 (+)NCBI
UNSW_CanFamBas_1.02416,596,221 - 16,603,283 (+)NCBI
UU_Cfam_GSD_1.02416,929,896 - 16,937,077 (+)NCBI
PCNA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl205,114,953 - 5,126,626 (-)EnsemblGRCh38hg38GRCh38
GRCh38205,114,953 - 5,126,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37205,095,599 - 5,107,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,043,599 - 5,055,268 (-)NCBINCBI36hg18NCBI36
Build 34205,043,598 - 5,048,647NCBI
Celera205,165,620 - 5,177,289 (-)NCBI
Cytogenetic Map20p12.3NCBI
HuRef205,049,534 - 5,061,197 (-)NCBIHuRef
CHM1_1205,096,983 - 5,108,646 (-)NCBICHM1_1
Pcna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,091,206 - 132,095,100 (-)NCBIGRCm39mm39
GRCm39 Ensembl2132,091,082 - 132,095,234 (-)Ensembl
GRCm382132,249,286 - 132,253,180 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,249,162 - 132,253,314 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,075,022 - 132,078,916 (-)NCBIGRCm37mm9NCBIm37
MGSCv362131,940,727 - 131,944,621 (-)NCBImm8
Celera2133,472,471 - 133,476,365 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
Pcna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23119,499,039 - 119,502,911 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3119,498,810 - 119,502,995 (-)Ensembl
Rnor_6.03124,880,698 - 124,884,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,880,698 - 124,884,570 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,376,235 - 131,380,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,008,715 - 120,012,589 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13119,914,289 - 119,918,243 (-)NCBI
Celera3118,296,567 - 118,300,439 (-)NCBICelera
RH 3.4 Map31023.4RGD
Cytogenetic Map3q36NCBI
Pcna
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,744,601 - 15,749,673 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,744,601 - 15,748,910 (-)NCBIChiLan1.0ChiLan1.0
PCNA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1204,927,731 - 4,939,440 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,927,731 - 4,939,440 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0205,134,930 - 5,146,603 (-)NCBIMhudiblu_PPA_v0panPan3
Pcna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,334,861 - 165,339,851 (+)NCBI
SpeTri2.0NW_00493648513,766,221 - 13,771,215 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCNA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,125,814 - 14,185,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,137,746 - 14,142,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,127,978 - 15,132,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCNA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,936,600 - 32,953,635 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl232,948,196 - 32,953,991 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607111,581,432 - 11,598,250 (-)NCBIVero_WHO_p1.0
Pcna
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247416,143,584 - 6,148,055 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 2 18 2 6 2 6 3 12 8 10 6
Low 3 4 4 4 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000009743   ⟹   ENSCAFP00000009045
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2416,478,769 - 16,484,992 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000090141   ⟹   ENSCAFP00000065515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2416,478,769 - 16,484,979 (+)Ensembl
RefSeq Acc Id: XM_038433208   ⟹   XP_038289136
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02416,892,157 - 16,899,336 (+)NCBI
RefSeq Acc Id: XM_038508408   ⟹   XP_038364336
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12416,489,199 - 16,496,352 (+)NCBI
RefSeq Acc Id: XM_038571681   ⟹   XP_038427609
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02416,929,896 - 16,937,077 (+)NCBI
RefSeq Acc Id: XM_038635927   ⟹   XP_038491855
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02416,596,221 - 16,603,283 (+)NCBI
RefSeq Acc Id: XM_534355   ⟹   XP_534355
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12416,478,774 - 16,485,992 (+)NCBI
Dog10K_Boxer_Tasha2416,301,671 - 16,308,866 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038289136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364336 (Get FASTA)   NCBI Sequence Viewer  
  XP_038427609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038491855 (Get FASTA)   NCBI Sequence Viewer  
  XP_534355 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_534355   ⟸   XM_534355
- UniProtKB: E2R0D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000009045   ⟸   ENSCAFT00000009743
RefSeq Acc Id: ENSCAFP00000065515   ⟸   ENSCAFT00000090141
RefSeq Acc Id: XP_038364336   ⟸   XM_038508408
RefSeq Acc Id: XP_038491855   ⟸   XM_038635927
RefSeq Acc Id: XP_038289136   ⟸   XM_038433208
RefSeq Acc Id: XP_038427609   ⟸   XM_038571681


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006030 Ensembl
NCBI Gene PCNA ENTREZGENE
UniProt E2R0D6 ENTREZGENE
VGNC ID VGNC:44310 ENTREZGENE