VPS39 (VPS39 subunit of HOPS complex) - Rat Genome Database

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Gene: VPS39 (VPS39 subunit of HOPS complex) Canis lupus familiaris
Analyze
Symbol: VPS39
Name: VPS39 subunit of HOPS complex
RGD ID: 12187524
Description: INVOLVED IN autophagosome-lysosome fusion (inferred); autophagy (inferred); endocytic recycling (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); cerebellar ataxia (ortholog); FOUND IN AP-3 adaptor complex (inferred); cytoplasm (inferred); HOPS complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vam6/Vps39-like protein; VPS39, HOPS complex subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,166,510 - 9,213,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,166,656 - 9,213,629 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,224,925 - 9,271,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,301,394 - 9,348,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,301,405 - 9,348,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,221,763 - 9,268,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,326,778 - 9,373,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,461,083 - 9,508,187 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VPS39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,166,510 - 9,213,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,166,656 - 9,213,629 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,224,925 - 9,271,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,301,394 - 9,348,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,301,405 - 9,348,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,221,763 - 9,268,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,326,778 - 9,373,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,461,083 - 9,508,187 (-)NCBIUU_Cfam_GSD_1.0
VPS39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,158,701 - 42,208,304 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,158,701 - 42,208,307 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,450,899 - 42,500,502 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,238,191 - 40,287,794 (-)NCBINCBI36Build 36hg18NCBI36
Build 341540,238,191 - 40,287,794NCBI
Celera1519,218,602 - 19,268,201 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1519,299,375 - 19,348,651 (-)NCBIHuRef
CHM1_11542,569,358 - 42,618,969 (-)NCBICHM1_1
T2T-CHM13v2.01539,964,724 - 40,014,333 (-)NCBIT2T-CHM13v2.0
Vps39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,146,942 - 120,183,618 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,146,942 - 120,183,618 (-)EnsemblGRCm39 Ensembl
GRCm382120,316,461 - 120,353,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,316,461 - 120,353,137 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,142,197 - 120,178,869 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,008,978 - 120,044,551 (-)NCBIMGSCv36mm8
Celera2121,470,840 - 121,507,455 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.31NCBI
Vps39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,721,076 - 127,758,658 (-)NCBIGRCr8
mRatBN7.23107,266,846 - 107,304,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,267,310 - 107,304,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,942,113 - 110,979,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,537,671 - 119,575,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03117,198,055 - 117,235,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03112,087,213 - 112,125,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,087,677 - 112,125,318 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,634,996 - 118,673,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,803,136 - 106,842,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,699,565 - 106,738,812 (-)NCBI
Celera3106,175,713 - 106,213,173 (-)NCBICelera
Cytogenetic Map3q35NCBI
Vps39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,893,249 - 8,936,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,893,249 - 8,936,351 (-)NCBIChiLan1.0ChiLan1.0
VPS39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,402,580 - 31,452,291 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,555,736 - 35,605,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,113,047 - 21,162,738 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,273,546 - 39,323,196 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,273,546 - 39,323,196 (-)Ensemblpanpan1.1panPan2
Vps39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,609,300 - 87,664,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,457,035 - 5,512,625 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,457,363 - 5,512,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,144,344 - 129,198,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,144,338 - 129,198,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,088,787 - 144,140,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,787,204 - 40,834,065 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,801,245 - 40,834,113 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,169,128 - 100,216,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,284,104 - 9,337,892 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,286,614 - 9,337,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS39
393 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 3 16 6 6 12 10 6
Low 1 2 6 6 6 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014109568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000015964   ⟹   ENSCAFP00000014766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,166,656 - 9,213,629 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000037504   ⟹   ENSCAFP00000033030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,166,656 - 9,213,629 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031569   ⟹   ENSCAFP00845024712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl309,301,405 - 9,348,551 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031776   ⟹   ENSCAFP00845024866
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl309,301,405 - 9,348,551 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031921   ⟹   ENSCAFP00845024962
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl309,301,405 - 9,340,480 (-)Ensembl
RefSeq Acc Id: XM_014109568   ⟹   XP_013965043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,166,510 - 9,213,806 (-)NCBI
Dog10K_Boxer_Tasha309,224,925 - 9,271,967 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412997   ⟹   XP_022268705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,166,510 - 9,213,633 (-)NCBI
Dog10K_Boxer_Tasha309,224,925 - 9,271,790 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038442064   ⟹   XP_038297992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,301,394 - 9,348,551 (-)NCBI
RefSeq Acc Id: XM_038442065   ⟹   XP_038297993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,301,394 - 9,348,375 (-)NCBI
RefSeq Acc Id: XM_038442066   ⟹   XP_038297994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,301,394 - 9,348,552 (-)NCBI
RefSeq Acc Id: XM_038516547   ⟹   XP_038372475
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1309,221,763 - 9,268,865 (-)NCBI
RefSeq Acc Id: XM_038516548   ⟹   XP_038372476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1309,221,763 - 9,268,689 (-)NCBI
RefSeq Acc Id: XM_038516549   ⟹   XP_038372477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1309,221,763 - 9,268,866 (-)NCBI
RefSeq Acc Id: XM_038580158   ⟹   XP_038436086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,461,083 - 9,508,186 (-)NCBI
RefSeq Acc Id: XM_038580159   ⟹   XP_038436087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,461,083 - 9,508,010 (-)NCBI
RefSeq Acc Id: XM_038580160   ⟹   XP_038436088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,461,083 - 9,508,187 (-)NCBI
RefSeq Acc Id: XM_038644443   ⟹   XP_038500371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,326,778 - 9,373,929 (-)NCBI
RefSeq Acc Id: XM_038644444   ⟹   XP_038500372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,326,778 - 9,373,753 (-)NCBI
RefSeq Acc Id: XM_038644445   ⟹   XP_038500373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,326,778 - 9,373,930 (-)NCBI
RefSeq Acc Id: XM_544640   ⟹   XP_544640
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,166,510 - 9,213,805 (-)NCBI
Dog10K_Boxer_Tasha309,224,925 - 9,271,966 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013965043   ⟸   XM_014109568
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P521 (UniProtKB/TrEMBL),   A0A8I3NYS1 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_544640   ⟸   XM_544640
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JSW1 (UniProtKB/TrEMBL),   A0A8C0NXL2 (UniProtKB/TrEMBL),   A0A8I3NU55 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268705   ⟸   XM_022412997
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000014766   ⟸   ENSCAFT00000015964
RefSeq Acc Id: ENSCAFP00000033030   ⟸   ENSCAFT00000037504
RefSeq Acc Id: XP_038372477   ⟸   XM_038516549
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038372475   ⟸   XM_038516547
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372476   ⟸   XM_038516548
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500373   ⟸   XM_038644445
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038500371   ⟸   XM_038644443
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500372   ⟸   XM_038644444
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038297994   ⟸   XM_038442066
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P521 (UniProtKB/TrEMBL),   A0A8I3NYS1 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038297992   ⟸   XM_038442064
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JSW1 (UniProtKB/TrEMBL),   A0A8C0NXL2 (UniProtKB/TrEMBL),   A0A8I3NU55 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038297993   ⟸   XM_038442065
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436088   ⟸   XM_038580160
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P521 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL),   A0A8I3NYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436086   ⟸   XM_038580158
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JSW1 (UniProtKB/TrEMBL),   A0A8C0NXL2 (UniProtKB/TrEMBL),   A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NU55 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436087   ⟸   XM_038580159
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SFZ7 (UniProtKB/TrEMBL),   A0A8I3NUC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024866   ⟸   ENSCAFT00845031776
RefSeq Acc Id: ENSCAFP00845024962   ⟸   ENSCAFT00845031921
RefSeq Acc Id: ENSCAFP00845024712   ⟸   ENSCAFT00845031569
Protein Domains
CNH

Promoters
RGD ID:13688492
Promoter ID:EPDNEW_C6560
Type:multiple initiation site
Name:VPS39_1
Description:VPS39, HOPS complex subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,213,776 - 9,213,836EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010031 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020476 UniProtKB/TrEMBL
  ENSCAFG00040012502 UniProtKB/TrEMBL
  ENSCAFG00845017829 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015964.6 UniProtKB/TrEMBL
  ENSCAFT00000037504.3 UniProtKB/TrEMBL
  ENSCAFT00000106958.1 UniProtKB/TrEMBL
  ENSCAFT00030038199.1 UniProtKB/TrEMBL
  ENSCAFT00030038265.1 UniProtKB/TrEMBL
  ENSCAFT00040023444.1 UniProtKB/TrEMBL
  ENSCAFT00040023484.1 UniProtKB/TrEMBL
  ENSCAFT00040023632.1 UniProtKB/TrEMBL
  ENSCAFT00845031569 ENTREZGENE
  ENSCAFT00845031569.1 UniProtKB/TrEMBL
  ENSCAFT00845031776 ENTREZGENE
  ENSCAFT00845031776.1 UniProtKB/TrEMBL
  ENSCAFT00845031921.1 UniProtKB/TrEMBL
InterPro Clathrin_H-chain/VPS_repeat UniProtKB/TrEMBL
  CNH_dom UniProtKB/TrEMBL
  Vam6/VPS39/TRAP1 UniProtKB/TrEMBL
  VPS39/TGF_beta_rcpt-assoc_1 UniProtKB/TrEMBL
  VPS39/TGF_beta_rcpt-assoc_2 UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:487516 UniProtKB/TrEMBL
NCBI Gene VPS39 ENTREZGENE
PANTHER PTHR12894 UniProtKB/TrEMBL
  VAM6_VPS39-LIKE PROTEIN UniProtKB/TrEMBL
Pfam CNH UniProtKB/TrEMBL
  Vps39_1 UniProtKB/TrEMBL
  Vps39_2 UniProtKB/TrEMBL
PROSITE CHCR UniProtKB/TrEMBL
  CNH UniProtKB/TrEMBL
SMART CNH UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C0JSW1 ENTREZGENE
  A0A8C0NXL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P521 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SFZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NU55 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NUC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NYS1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:48290 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-30 VPS39  VPS39 subunit of HOPS complex    VPS39, HOPS complex subunit  Symbol and/or name change 5135510 APPROVED