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PMS2 (Canis lupus familiaris - dog) |
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PMS2 (Homo sapiens - human) |
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Pms2 (Mus musculus - house mouse) |
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Pms2 (Rattus norvegicus - Norway rat) |
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Pms2 (Chinchilla lanigera - long-tailed chinchilla) |
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PMS2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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Pms2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PMS2 (Sus scrofa - pig) |
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LOC103246803 (Chlorocebus sabaeus - green monkey) |
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Pms2 (Heterocephalus glaber - naked mole-rat) |
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Variants in PMS2
193 total Variants |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | reproductive system | respiratory system | adipose tissue | |
High | ||||||||||||
Medium | ||||||||||||
Low | 5 | 5 | 22 | 6 | 6 | 6 | 6 | 6 | 12 | 10 | 6 | |
Below cutoff | 8 |
RefSeq Transcripts | XM_014114296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_022419723 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038478217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038478218 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038478219 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038539467 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038539468 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038539469 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038603550 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038603551 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038603552 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038668255 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038668256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_038668257 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_536879 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AAEX04000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAAHUQ010000068 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAAQRD010000090 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAAUVH010000065 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
REHQ01000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSCAFT00845017776 ⟹ ENSCAFP00845013847 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSCAFT00845017871 ⟹ ENSCAFP00845013920 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSCAFT00845017944 ⟹ ENSCAFP00845013979 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_014114296 ⟹ XP_013969771 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_022419723 ⟹ XP_022275431 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_038478217 ⟹ XP_038334145 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038478218 ⟹ XP_038334146 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038478219 ⟹ XP_038334147 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038539467 ⟹ XP_038395395 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038539468 ⟹ XP_038395396 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038539469 ⟹ XP_038395397 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038603550 ⟹ XP_038459478 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038603551 ⟹ XP_038459479 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038603552 ⟹ XP_038459480 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038668255 ⟹ XP_038524183 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038668256 ⟹ XP_038524184 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_038668257 ⟹ XP_038524185 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_536879 ⟹ XP_536879 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | XP_013969771 | (Get FASTA) | NCBI Sequence Viewer |
XP_022275431 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038334145 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038334146 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038334147 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038395395 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038395396 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038395397 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038459478 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038459479 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038459480 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038524183 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038524184 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038524185 | (Get FASTA) | NCBI Sequence Viewer | |
XP_536879 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSCAFP00000022924.4 | ||
ENSCAFP00000022932.5 | |||
ENSCAFP00000058310.2 | |||
ENSCAFP00030029678.1 | |||
ENSCAFP00030029772.1 | |||
ENSCAFP00030029811.1 | |||
ENSCAFP00040020989.1 | |||
ENSCAFP00040021090.1 | |||
ENSCAFP00040021222.1 | |||
ENSCAFP00040021271.1 | |||
ENSCAFP00845013847 | |||
ENSCAFP00845013847.1 | |||
ENSCAFP00845013920.1 | |||
ENSCAFP00845013979.1 |
RefSeq Acc Id: | XP_013969771 ⟸ XM_014114296 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8C0SHR0 (UniProtKB/TrEMBL), A0A8P0P7G7 (UniProtKB/TrEMBL), A0A8C0SIQ6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_536879 ⟸ XM_536879 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8C0KXD2 (UniProtKB/TrEMBL), A0A8C0P006 (UniProtKB/TrEMBL), A0A8I3NEX7 (UniProtKB/TrEMBL), A0A8C0SGN4 (UniProtKB/TrEMBL), A0A8I3NGD0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_022275431 ⟸ XM_022419723 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_038334145 ⟸ XM_038478217 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038334146 ⟸ XM_038478218 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038334147 ⟸ XM_038478219 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038459478 ⟸ XM_038603550 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038459479 ⟸ XM_038603551 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038459480 ⟸ XM_038603552 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038524183 ⟸ XM_038668255 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8C0SHR0 (UniProtKB/TrEMBL), A0A8P0P7G7 (UniProtKB/TrEMBL), A0A8C0SIQ6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038524184 ⟸ XM_038668256 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8C0KXD2 (UniProtKB/TrEMBL), A0A8C0P006 (UniProtKB/TrEMBL), A0A8I3NEX7 (UniProtKB/TrEMBL), A0A8C0SGN4 (UniProtKB/TrEMBL), A0A8I3NGD0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038524185 ⟸ XM_038668257 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038395395 ⟸ XM_038539467 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8C0SHR0 (UniProtKB/TrEMBL), A0A8C0SIQ6 (UniProtKB/TrEMBL), A0A8P0P7G7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038395396 ⟸ XM_038539468 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8C0KXD2 (UniProtKB/TrEMBL), A0A8C0P006 (UniProtKB/TrEMBL), A0A8C0SGN4 (UniProtKB/TrEMBL), A0A8I3NEX7 (UniProtKB/TrEMBL), A0A8I3NGD0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038395397 ⟸ XM_038539469 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | ENSCAFP00845013920 ⟸ ENSCAFT00845017871 |
RefSeq Acc Id: | ENSCAFP00845013847 ⟸ ENSCAFT00845017776 |
RefSeq Acc Id: | ENSCAFP00845013979 ⟸ ENSCAFT00845017944 |
RGD ID: | 13683563 | ||||||||
Promoter ID: | EPDNEW_C1629 | ||||||||
Type: | single initiation site | ||||||||
Name: | PMS2_1 | ||||||||
Description: | PMS1 homolog 2, mismatch repair system component | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
Ensembl Genes | ENSCAFG00000015559 | Ensembl, UniProtKB/TrEMBL |
ENSCAFG00030018462 | UniProtKB/TrEMBL | |
ENSCAFG00040013056 | UniProtKB/TrEMBL | |
ENSCAFG00845010093 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Transcript | ENSCAFT00000024713.5 | UniProtKB/TrEMBL |
ENSCAFT00000024721.6 | UniProtKB/TrEMBL | |
ENSCAFT00000083506.2 | UniProtKB/TrEMBL | |
ENSCAFT00030034034.1 | UniProtKB/TrEMBL | |
ENSCAFT00030034142.1 | UniProtKB/TrEMBL | |
ENSCAFT00030034189.1 | UniProtKB/TrEMBL | |
ENSCAFT00040024159.1 | UniProtKB/TrEMBL | |
ENSCAFT00040024275.1 | UniProtKB/TrEMBL | |
ENSCAFT00040024425.1 | UniProtKB/TrEMBL | |
ENSCAFT00040024483.1 | UniProtKB/TrEMBL | |
ENSCAFT00845017776 | ENTREZGENE | |
ENSCAFT00845017776.1 | UniProtKB/TrEMBL | |
ENSCAFT00845017871.1 | UniProtKB/TrEMBL | |
ENSCAFT00845017944.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.1370.100 | UniProtKB/TrEMBL |
3.30.1540.20 | UniProtKB/TrEMBL | |
3.30.230.10 | UniProtKB/TrEMBL | |
3.30.565.10 | UniProtKB/TrEMBL | |
InterPro | DNA_mismatch_repair_CS | UniProtKB/TrEMBL |
DNA_mismatch_repair_N | UniProtKB/TrEMBL | |
DNA_mismatch_S5_2-like | UniProtKB/TrEMBL | |
HATPase_C_sf | UniProtKB/TrEMBL | |
MutL/Mlh/Pms | UniProtKB/TrEMBL | |
MutL_C | UniProtKB/TrEMBL | |
MutL_C_dimsub | UniProtKB/TrEMBL | |
MutL_C_regsub | UniProtKB/TrEMBL | |
MutL_C_sf | UniProtKB/TrEMBL | |
Ribosomal_S5_D2-typ_fold | UniProtKB/TrEMBL | |
Ribosomal_S5_D2-typ_fold_subgr | UniProtKB/TrEMBL | |
KEGG Report | cfa:479751 | UniProtKB/TrEMBL |
NCBI Gene | PMS2 | ENTREZGENE |
PANTHER | MISMATCH REPAIR ENDONUCLEASE PMS2 | UniProtKB/TrEMBL |
PTHR10073 | UniProtKB/TrEMBL | |
Pfam | DNA_mis_repair | UniProtKB/TrEMBL |
HATPase_c_3 | UniProtKB/TrEMBL | |
MutL_C | UniProtKB/TrEMBL | |
PROSITE | DNA_MISMATCH_REPAIR_1 | UniProtKB/TrEMBL |
SMART | DNA_mis_repair | UniProtKB/TrEMBL |
MutL_C | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF118116 | UniProtKB/TrEMBL |
SSF54211 | UniProtKB/TrEMBL | |
SSF55874 | UniProtKB/TrEMBL | |
UniProt | A0A8C0KXD2 | ENTREZGENE |
A0A8C0NPB1_CANLF | UniProtKB/TrEMBL | |
A0A8C0P006 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8C0SGN4 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8C0SHR0 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8C0SIQ6 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I3NEX7 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I3NGD0 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I3RXL0_CANLF | UniProtKB/TrEMBL | |
A0A8P0P7G7 | ENTREZGENE | |
UniProt Secondary | A0A8P0P7G7 | UniProtKB/TrEMBL |
VGNC ID | VGNC:54058 | ENTREZGENE |