EXOSC1 (exosome component 1) - Rat Genome Database

Name: EXOSC1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: EXOSC1 (exosome component 1) Canis lupus familiaris

Analyze

Symbol:

EXOSC1

Name:

exosome component 1

RGD ID:

12186866

Description:

ENCODES a protein that exhibits RNA exonuclease activity (ortholog); INVOLVED IN RNA catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); pontocerebellar hypoplasia type 1F (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

3'-5' exoribonuclease CSL4 homolog; exosome complex component CSL4

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EXOSC1 (exosome component 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Exosc1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Exosc1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Exosc1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EXOSC1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Exosc1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EXOSC1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EXOSC1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Exosc1 (exosome component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	10,729,186 - 10,738,978 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	10,731,243 - 10,738,900 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	10,911,886 - 10,921,678 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	11,051,515 - 11,061,308 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	11,050,820 - 11,061,552 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	10,712,577 - 10,722,369 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	10,773,099 - 10,782,899 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	10,913,284 - 10,923,076 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

pontocerebellar hypoplasia type 1F (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA catabolic process (ISO)

RNA processing (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (ISO)

exosome (RNase complex) (IEA)

nuclear exosome (RNase complex) (IEA)

nucleolus (IEA)

nucleus (IEA)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

RNA exonuclease activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

EXOSC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	10,729,186 - 10,738,978 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	10,731,243 - 10,738,900 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	10,911,886 - 10,921,678 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	11,051,515 - 11,061,308 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	11,050,820 - 11,061,552 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	10,712,577 - 10,722,369 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	10,773,099 - 10,782,899 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	10,913,284 - 10,923,076 (-)	NCBI		UU_Cfam_GSD_1.0

EXOSC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	97,435,909 - 97,446,006 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	97,435,909 - 97,446,017 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	99,195,666 - 99,205,763 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	99,185,656 - 99,195,758 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	99,181,068 - 99,195,741	NCBI
Celera	10	92,903,619 - 92,943,824 (-)	NCBI		Celera
Cytogenetic Map	10	q24.1	NCBI
HuRef	10	92,821,320 - 92,831,424 (-)	NCBI		HuRef
CHM1_1	10	99,477,406 - 99,487,508 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	98,316,090 - 98,326,186 (-)	NCBI		T2T-CHM13v2.0

Exosc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	41,911,417 - 41,921,836 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	41,910,731 - 41,921,862 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	41,922,978 - 41,933,423 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	41,922,292 - 41,933,423 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	41,997,470 - 42,007,804 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	41,977,030 - 41,986,605 (-)	NCBI		MGSCv36	mm8
Celera	19	42,724,141 - 42,734,563 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	35.46	NCBI

Exosc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	250,684,746 - 250,694,748 (-)	NCBI		GRCr8
mRatBN7.2	1	240,734,777 - 240,745,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	240,734,773 - 240,745,438 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	248,880,748 - 248,890,754 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	255,577,896 - 255,587,900 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	248,230,907 - 248,240,911 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	261,169,798 - 261,179,865 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	261,170,229 - 261,179,790 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	268,621,714 - 268,632,337 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	236,570,459 - 236,580,516 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

Exosc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	3,576,555 - 3,583,183 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	3,576,555 - 3,583,183 (-)	NCBI	ChiLan1.0	ChiLan1.0

EXOSC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	109,350,417 - 109,360,407 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	109,355,835 - 109,365,726 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	94,058,794 - 94,068,776 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	97,552,667 - 97,562,253 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	97,552,874 - 97,562,233 (-)	Ensembl	panpan1.1		panPan2

Exosc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	36,191,538 - 36,199,489 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	2,230,737 - 2,238,135 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	2,230,712 - 2,237,401 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EXOSC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	108,830,906 - 108,842,780 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	108,834,609 - 108,842,827 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	118,340,140 - 118,346,779 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EXOSC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	90,603,371 - 90,615,934 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	90,602,667 - 90,615,840 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	51,503,258 - 51,513,397 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Exosc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	9,101,483 - 9,107,336 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	9,099,752 - 9,107,393 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in EXOSC1
131 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	21	5	6	5	6	5	12	8	10	6
Low			1	1		1		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022411912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022411913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_534981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000014417 ⟹ ENSCAFP00000013333

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	10,731,497 - 10,738,900 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000078551 ⟹ ENSCAFP00000048242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	10,731,497 - 10,738,900 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000079178 ⟹ ENSCAFP00000064445

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	10,731,243 - 10,738,761 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087895 ⟹ ENSCAFP00000065065

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	10,731,556 - 10,738,900 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000091144 ⟹ ENSCAFP00000054044

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	10,731,497 - 10,738,900 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845051635 ⟹ ENSCAFP00845040513

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	28	11,050,820 - 11,061,552 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845051669 ⟹ ENSCAFP00845040540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	28	11,050,820 - 11,061,552 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845051701 ⟹ ENSCAFP00845040565

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	28	11,050,820 - 11,061,220 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845051710 ⟹ ENSCAFP00845040572

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	28	11,053,885 - 11,061,230 (-)	Ensembl

RefSeq Acc Id:

XM_022411912 ⟹ XP_022267620

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	10,729,186 - 10,738,955 (-)	NCBI
Dog10K_Boxer_Tasha	28	10,911,886 - 10,921,649 (-)	NCBI

Sequence:

show sequence

CGCGTTTCTTACTGCAGAACTGCTCCTGAACTTTGGCCAATGAGAAGCCGACTTCGTTTCCCTC
CAGTGGCAGTCATGGCGCCGCCCGTGAGGTACTGCATCCCGGGCGAACGTCTGTGTAACTTGGA
GGAGGGCAGCCCGGGCAGCGGCACTTATACTCGCCACGGCTACATCTTTTCGTCGCTTGCTGGC
TGCCTGACGAAGAGCAGCGAGAATGGCGCGCTTCCTGTGATTTCTGTGATGAGAGAAACAGAAT
CTCAATTGCTACCAGATGTGGGGACTATTGTAACCTGTAAGGTCTCTAGCATCAATTCACGCTT
TGCCAAAGTGCACATCCTATATGTGGGGTCCACACCACTTAAGAACTCTTTTCGAGGAACTATC
CGCAAGGAAGATGTCCGAGCTACTGAAAAAGACAAGGTTGTTGGTTGAGATTTATAAGAGTTTC
CGCCCTGGTGACATTGTCTTGGCCAAAGTGATCTCTCTGGGTGATGCACAATCGAACTACCTCC
TGACCACTGCTGAGAATGAACTTGGGGTGGTGGTGGCCCACAGTGAATCGGGTGTCCAGATGGT
TCCCATTAGCTGGTGTGAGATGCAGTGCCCTAAGACCCACACTAAAGAATTCCGGAAAGTGGCC
AGAGTACAGCCTGAATTCTTACAGACCTAAGAAGATTTACCCTACATTTTACCCCATGGAGAGG
GGTAAGCCGTTTCTAAGAGTACATACATGTATGAACCCAACATCAAGATGCCATTGTCTTTATT
CAAACACCTGTGGTTGGCTAACAACCATCTTTAGAAAAATCTGCCAGCAACTTATACTGTAGGT
GGAACATTTTTCTTATGAACCTTTCAGTGGATTTCATTCTCGAGTGATGAATTTTTTTGGAGGC
GCCAGCAGACAAACTGTATAATATTGGAAGTAGCCCGATCCTTCTGACAGTCTCACAGATACGT
ATTTTTGCTGTGACAAAGAAAACGTTTTTACTAAAAGGATTTTATGGCTTCTGTTGTCTTGAGT
AGGGAAGGGAATCTAAAAAGCATCATGACATTTAAAGCTGGGGTTTGCCTGGTTGCACCCATTA
ACTTACATGTCAAGTGCTTGCTTTCTCTGGAAAAGCCTAATCTCCAATCTTTTTTATACTTTTT
ATGTTCACTTTCAAGCACTTCCACTTACTGAGTACTTTCTATGTGCCAGGCACTAGGTGAAGCA
CTTTATATACATCTCATTTAAACAGATTACAATTTAGTGAGAATTACATAACACATGGTGATTC
AGGGTACATGCAAGTAGTTTGAAAGCAATTAGTTGAACGAACATAGTATTACTGATTTAGTGGG
TACCCTAAGAAATGTTTAAATCTGAATTGAAAAGAGGGACAGAGCACTATCATGTGAGGTGACC
AAGAAGGATCCGTGATGTGAAGCAAAAGGAACCGAAGAACTTAGATAAATGGAATGAAGGATAT
GCAAGGCAGACAGTGAAGCAAAGTATAGAAGCAAGAATGAATACACAAGTGTTCATTGAGGATG
AGGATGAGGAAGGGATGAGATGAGGGTTAAGCATGGAGAAGCTGCAGAAGGAATGGAAGGAAAG
AACTAGATGTCAGTTCTTGAGATGTTCTTCAAGGAGCCTGTATCTTTTATGTGTATTGACAGTG
GTTACAGGTAAACTCTGGAGTGTACCTGCCTAGGTTCATATCCTCTAGCTGCTAGCCTTGAATA
GGTTAGGTTGGGTTTTTTAGTTTTTGTTTTTTTTTAATAGAAAATTGGATTGGGATCCTTGTAG
CTCCCCATGCAGTTTTAAGAAATAATAGAGATTCCTTAGACACTTTGCCCATTTTTTCCCAATG
GTGACATTGTGCAAATTACAGTATACCTAAACAATCAGGATGTTGCCATTGATAGTAGTGCAAG
TTAACTTTGTTTCTTGTAAGTCTGTTTCCTTGTCTGGAATAGTATGATCTTAGGGTTATTGTGA
GGAAGAAATGCATAAGTTACAGTACATGCCAATATCGTTACATGTTACTGTTGTTATTATAGAT
CTGGTTGCCTTCTATCAAGTATGTTAAATTCCAGGCATTATGTTAAGCAGTCCCCTGATAGATG
TTTTAAACTTTACAGATTTTCTTTGATAGACAGTGCTGCAGAGAAAACTCCTATACTGTATATA
CTTGTGCCTGCCTAGGATTCTGTGGCAAAAGATTCCTAGAAGTGGAATGCCGGGTCAAAGAATG
TGTACATTTTAAATTCTGGTTATATTTTTCCCATGTTGCCTTGTAGAAAGATGCTACCACCTGA
TTCTCCCTACAGTGTTAGCCATTTTAACTTACTCTATCTCTGAACTTCCCAGTAACTCTGAAAT
GTACTGGTCATTTCTGTCTTTTACAGAGAGGTAAATTAAGGCTTAGAAAAATTAGCTAACTTGC
TCTAAGTCACATAGACATCAAGCGGCATAGCATTATTCAAACCTAGGTTTGTCTTACTGTAAAA
CCCAAATTCTTTCTTTTGCACCATGGTGCCTCCTTTTTCCAAGTATTGACTAGAACCTTGGGCA
TGCAATTAGAGGCTCTCCAAATTGACAATGGCTCATTAATTATGAGTGCTTGTTGGGACATCAT
TCATTCAATAAATATACATTGAGCAACTACTATGCCCACCACTTTTCCAGGAAGTAGGAGTTAA
AGCAGTGAACATGATAGAACCCTTTCCTTGTCGAGATTACATTCTACTGGGGAAAGACAGGTGA
TACGTAAATAAAAGTTATAATAAAGTGTCATAAAGAGCATTTGAAACAGGTGGATAATAGCCCT
TTCTGATCTACTGCAGAGCAGGTTAGATTTTCTCCATTAACCATTGATACTAGTATTGCAAGTA
AATTTATATGCCTGTCTCCCCTACTTGCCTGAGCTTTTAGGGCAGGATTCTGTCTTTGAATTTT
CAGTACCTGGTATTGTGACTAAAATATAGCAAAAGCACAATAAAAAAATTTTTGAATGTTCTCA

hide sequence

RefSeq Acc Id:

XM_022411913 ⟹ XP_022267621

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	10,729,186 - 10,738,978 (-)	NCBI
Dog10K_Boxer_Tasha	28	10,911,886 - 10,921,678 (-)	NCBI

Sequence:

show sequence

ACGTGATAATTCGCACCAATTGGCGCGTTTCTTACTGCAGAACTGCTCCTGAACTTTGGCCAAT
GAGAAGCCGACTTCGTTTCCCTCCAGTGGCAGTCATGGCGCCGCCCGTGAGGTACTGCATCCCG
GGCTGCTTTTGATTTCGCGGTCGATAGGAAAGGGCACTGCGGACGCGTCTTTAGGACCTCAGCA
GAACAGCTGGTCTCCGAGTTTCTTCCAGCTGAGGTCTCCACTGCTGGGCACCTCGCCACCACAG
GCCAGATGTGGTCCCGCTTGATTCTGTTGCTGACATTCGGGGAAGGAAGTTAGGGGACGAGCAG
AGGCGGGTTCCGCCTGCAGTGAGCTGAATCTTGTCCGGATGTCGCCTCCCTTTCTGGTTTCATC
TTGCTCCGCTATTCCCACCCCACTCTGCAGTCTAGTCACACAGGCTTCTTTGTCGCTGGTGGGC
TTCCTGTGATTTCTGTGATGAGAGAAACAGAATCTCAATTGCTACCAGATGTGGGGACTATTGT
AACCTGTAAGGTCTCTAGCATCAATTCACGCTTTGCCAAAGTGCACATCCTATATGTGGGGTCC
ACACCACTTAAGAACTCTTTTCGAGGAACTATCCGCAAGGAAGATGTCCGAGCTACTGAAAAAG
ACAAGGTTGTTGGTTGAGATTTATAAGAGTTTCCGCCCTGGTGACATTGTCTTGGCCAAAGTGA
TCTCTCTGGGTGATGCACAATCGAACTACCTCCTGACCACTGCTGAGAATGAACTTGGGGTGGT
GGTGGCCCACAGTGAATCGGGTGTCCAGATGGTTCCCATTAGCTGGTGTGAGATGCAGTGCCCT
AAGACCCACACTAAAGAATTCCGGAAAGTGGCCAGAGTACAGCCTGAATTCTTACAGACCTAAG
AAGATTTACCCTACATTTTACCCCATGGAGAGGGGTAAGCCGTTTCTAAGAGTACATACATGTA
TGAACCCAACATCAAGATGCCATTGTCTTTATTCAAACACCTGTGGTTGGCTAACAACCATCTT
TAGAAAAATCTGCCAGCAACTTATACTGTAGGTGGAACATTTTTCTTATGAACCTTTCAGTGGA
TTTCATTCTCGAGTGATGAATTTTTTTGGAGGCGCCAGCAGACAAACTGTATAATATTGGAAGT
AGCCCGATCCTTCTGACAGTCTCACAGATACGTATTTTTGCTGTGACAAAGAAAACGTTTTTAC
TAAAAGGATTTTATGGCTTCTGTTGTCTTGAGTAGGGAAGGGAATCTAAAAAGCATCATGACAT
TTAAAGCTGGGGTTTGCCTGGTTGCACCCATTAACTTACATGTCAAGTGCTTGCTTTCTCTGGA
AAAGCCTAATCTCCAATCTTTTTTATACTTTTTATGTTCACTTTCAAGCACTTCCACTTACTGA
GTACTTTCTATGTGCCAGGCACTAGGTGAAGCACTTTATATACATCTCATTTAAACAGATTACA
ATTTAGTGAGAATTACATAACACATGGTGATTCAGGGTACATGCAAGTAGTTTGAAAGCAATTA
GTTGAACGAACATAGTATTACTGATTTAGTGGGTACCCTAAGAAATGTTTAAATCTGAATTGAA
AAGAGGGACAGAGCACTATCATGTGAGGTGACCAAGAAGGATCCGTGATGTGAAGCAAAAGGAA
CCGAAGAACTTAGATAAATGGAATGAAGGATATGCAAGGCAGACAGTGAAGCAAAGTATAGAAG
CAAGAATGAATACACAAGTGTTCATTGAGGATGAGGATGAGGAAGGGATGAGATGAGGGTTAAG
CATGGAGAAGCTGCAGAAGGAATGGAAGGAAAGAACTAGATGTCAGTTCTTGAGATGTTCTTCA
AGGAGCCTGTATCTTTTATGTGTATTGACAGTGGTTACAGGTAAACTCTGGAGTGTACCTGCCT
AGGTTCATATCCTCTAGCTGCTAGCCTTGAATAGGTTAGGTTGGGTTTTTTAGTTTTTGTTTTT
TTTTAATAGAAAATTGGATTGGGATCCTTGTAGCTCCCCATGCAGTTTTAAGAAATAATAGAGA
TTCCTTAGACACTTTGCCCATTTTTTCCCAATGGTGACATTGTGCAAATTACAGTATACCTAAA
CAATCAGGATGTTGCCATTGATAGTAGTGCAAGTTAACTTTGTTTCTTGTAAGTCTGTTTCCTT
GTCTGGAATAGTATGATCTTAGGGTTATTGTGAGGAAGAAATGCATAAGTTACAGTACATGCCA
ATATCGTTACATGTTACTGTTGTTATTATAGATCTGGTTGCCTTCTATCAAGTATGTTAAATTC
CAGGCATTATGTTAAGCAGTCCCCTGATAGATGTTTTAAACTTTACAGATTTTCTTTGATAGAC
AGTGCTGCAGAGAAAACTCCTATACTGTATATACTTGTGCCTGCCTAGGATTCTGTGGCAAAAG
ATTCCTAGAAGTGGAATGCCGGGTCAAAGAATGTGTACATTTTAAATTCTGGTTATATTTTTCC
CATGTTGCCTTGTAGAAAGATGCTACCACCTGATTCTCCCTACAGTGTTAGCCATTTTAACTTA
CTCTATCTCTGAACTTCCCAGTAACTCTGAAATGTACTGGTCATTTCTGTCTTTTACAGAGAGG
TAAATTAAGGCTTAGAAAAATTAGCTAACTTGCTCTAAGTCACATAGACATCAAGCGGCATAGC
ATTATTCAAACCTAGGTTTGTCTTACTGTAAAACCCAAATTCTTTCTTTTGCACCATGGTGCCT
CCTTTTTCCAAGTATTGACTAGAACCTTGGGCATGCAATTAGAGGCTCTCCAAATTGACAATGG
CTCATTAATTATGAGTGCTTGTTGGGACATCATTCATTCAATAAATATACATTGAGCAACTACT
ATGCCCACCACTTTTCCAGGAAGTAGGAGTTAAAGCAGTGAACATGATAGAACCCTTTCCTTGT
CGAGATTACATTCTACTGGGGAAAGACAGGTGATACGTAAATAAAAGTTATAATAAAGTGTCAT
AAAGAGCATTTGAAACAGGTGGATAATAGCCCTTTCTGATCTACTGCAGAGCAGGTTAGATTTT
CTCCATTAACCATTGATACTAGTATTGCAAGTAAATTTATATGCCTGTCTCCCCTACTTGCCTG
AGCTTTTAGGGCAGGATTCTGTCTTTGAATTTTCAGTACCTGGTATTGTGACTAAAATATAGCA
AAAGCACAATAAAAAAATTTTTGAATGTTCTCA

hide sequence

RefSeq Acc Id:

XM_038440171 ⟹ XP_038296099

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	11,051,515 - 11,061,273 (-)	NCBI

RefSeq Acc Id:

XM_038440172 ⟹ XP_038296100

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	11,051,515 - 11,061,279 (-)	NCBI

RefSeq Acc Id:

XM_038440173 ⟹ XP_038296101

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	11,051,515 - 11,061,308 (-)	NCBI

RefSeq Acc Id:

XM_038514784 ⟹ XP_038370712

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	10,712,577 - 10,722,334 (-)	NCBI

RefSeq Acc Id:

XM_038514785 ⟹ XP_038370713

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	10,712,577 - 10,722,340 (-)	NCBI

RefSeq Acc Id:

XM_038514786 ⟹ XP_038370714

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	10,712,577 - 10,722,369 (-)	NCBI

RefSeq Acc Id:

XM_038578414 ⟹ XP_038434342

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	10,913,284 - 10,923,041 (-)	NCBI

RefSeq Acc Id:

XM_038578415 ⟹ XP_038434343

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	10,913,284 - 10,923,047 (-)	NCBI

RefSeq Acc Id:

XM_038578416 ⟹ XP_038434344

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	10,913,284 - 10,923,076 (-)	NCBI

RefSeq Acc Id:

XM_038642579 ⟹ XP_038498507

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	10,773,099 - 10,782,864 (-)	NCBI

RefSeq Acc Id:

XM_038642580 ⟹ XP_038498508

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	10,773,099 - 10,782,870 (-)	NCBI

RefSeq Acc Id:

XM_038642581 ⟹ XP_038498509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	10,773,099 - 10,782,899 (-)	NCBI

RefSeq Acc Id:

XM_534981 ⟹ XP_534981

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	10,729,186 - 10,738,955 (-)	NCBI
Dog10K_Boxer_Tasha	28	10,911,886 - 10,921,643 (-)	NCBI

Sequence:

show sequence

CGCGTTTCTTACTGCAGAACTGCTCCTGAACTTTGGCCAATGAGAAGCCGACTTCGTTTCCCTC
CAGTGGCAGTCATGGCGCCGCCCGTGAGGTACTGCATCCCGGGCGAACGTCTGTGTAACTTGGA
GGAGGGCAGCCCGGGCAGCGGCACTTATACTCGCCACGGCTACATCTTTTCGTCGCTTGCTGGC
TGCCTGACGAAGAGCAGCGAGAATGGCGCGCTTCCTGTGATTTCTGTGATGAGAGAAACAGAAT
CTCAATTGCTACCAGATGTGGGGACTATTGTAACCTGTAAGGTCTCTAGCATCAATTCACGCTT
TGCCAAAGTGCACATCCTATATGTGGGGTCCACACCACTTAAGAACTCTTTTCGAGGAACTATC
CGCAAGGAAGATGTCCGAGCTACTGAAAAAGACAAGGTTGAGATTTATAAGAGTTTCCGCCCTG
GTGACATTGTCTTGGCCAAAGTGATCTCTCTGGGTGATGCACAATCGAACTACCTCCTGACCAC
TGCTGAGAATGAACTTGGGGTGGTGGTGGCCCACAGTGAATCGGGTGTCCAGATGGTTCCCATT
AGCTGGTGTGAGATGCAGTGCCCTAAGACCCACACTAAAGAATTCCGGAAAGTGGCCAGAGTAC
AGCCTGAATTCTTACAGACCTAAGAAGATTTACCCTACATTTTACCCCATGGAGAGGGGTAAGC
CGTTTCTAAGAGTACATACATGTATGAACCCAACATCAAGATGCCATTGTCTTTATTCAAACAC
CTGTGGTTGGCTAACAACCATCTTTAGAAAAATCTGCCAGCAACTTATACTGTAGGTGGAACAT
TTTTCTTATGAACCTTTCAGTGGATTTCATTCTCGAGTGATGAATTTTTTTGGAGGCGCCAGCA
GACAAACTGTATAATATTGGAAGTAGCCCGATCCTTCTGACAGTCTCACAGATACGTATTTTTG
CTGTGACAAAGAAAACGTTTTTACTAAAAGGATTTTATGGCTTCTGTTGTCTTGAGTAGGGAAG
GGAATCTAAAAAGCATCATGACATTTAAAGCTGGGGTTTGCCTGGTTGCACCCATTAACTTACA
TGTCAAGTGCTTGCTTTCTCTGGAAAAGCCTAATCTCCAATCTTTTTTATACTTTTTATGTTCA
CTTTCAAGCACTTCCACTTACTGAGTACTTTCTATGTGCCAGGCACTAGGTGAAGCACTTTATA
TACATCTCATTTAAACAGATTACAATTTAGTGAGAATTACATAACACATGGTGATTCAGGGTAC
ATGCAAGTAGTTTGAAAGCAATTAGTTGAACGAACATAGTATTACTGATTTAGTGGGTACCCTA
AGAAATGTTTAAATCTGAATTGAAAAGAGGGACAGAGCACTATCATGTGAGGTGACCAAGAAGG
ATCCGTGATGTGAAGCAAAAGGAACCGAAGAACTTAGATAAATGGAATGAAGGATATGCAAGGC
AGACAGTGAAGCAAAGTATAGAAGCAAGAATGAATACACAAGTGTTCATTGAGGATGAGGATGA
GGAAGGGATGAGATGAGGGTTAAGCATGGAGAAGCTGCAGAAGGAATGGAAGGAAAGAACTAGA
TGTCAGTTCTTGAGATGTTCTTCAAGGAGCCTGTATCTTTTATGTGTATTGACAGTGGTTACAG
GTAAACTCTGGAGTGTACCTGCCTAGGTTCATATCCTCTAGCTGCTAGCCTTGAATAGGTTAGG
TTGGGTTTTTTAGTTTTTGTTTTTTTTTAATAGAAAATTGGATTGGGATCCTTGTAGCTCCCCA
TGCAGTTTTAAGAAATAATAGAGATTCCTTAGACACTTTGCCCATTTTTTCCCAATGGTGACAT
TGTGCAAATTACAGTATACCTAAACAATCAGGATGTTGCCATTGATAGTAGTGCAAGTTAACTT
TGTTTCTTGTAAGTCTGTTTCCTTGTCTGGAATAGTATGATCTTAGGGTTATTGTGAGGAAGAA
ATGCATAAGTTACAGTACATGCCAATATCGTTACATGTTACTGTTGTTATTATAGATCTGGTTG
CCTTCTATCAAGTATGTTAAATTCCAGGCATTATGTTAAGCAGTCCCCTGATAGATGTTTTAAA
CTTTACAGATTTTCTTTGATAGACAGTGCTGCAGAGAAAACTCCTATACTGTATATACTTGTGC
CTGCCTAGGATTCTGTGGCAAAAGATTCCTAGAAGTGGAATGCCGGGTCAAAGAATGTGTACAT
TTTAAATTCTGGTTATATTTTTCCCATGTTGCCTTGTAGAAAGATGCTACCACCTGATTCTCCC
TACAGTGTTAGCCATTTTAACTTACTCTATCTCTGAACTTCCCAGTAACTCTGAAATGTACTGG
TCATTTCTGTCTTTTACAGAGAGGTAAATTAAGGCTTAGAAAAATTAGCTAACTTGCTCTAAGT
CACATAGACATCAAGCGGCATAGCATTATTCAAACCTAGGTTTGTCTTACTGTAAAACCCAAAT
TCTTTCTTTTGCACCATGGTGCCTCCTTTTTCCAAGTATTGACTAGAACCTTGGGCATGCAATT
AGAGGCTCTCCAAATTGACAATGGCTCATTAATTATGAGTGCTTGTTGGGACATCATTCATTCA
ATAAATATACATTGAGCAACTACTATGCCCACCACTTTTCCAGGAAGTAGGAGTTAAAGCAGTG
AACATGATAGAACCCTTTCCTTGTCGAGATTACATTCTACTGGGGAAAGACAGGTGATACGTAA
ATAAAAGTTATAATAAAGTGTCATAAAGAGCATTTGAAACAGGTGGATAATAGCCCTTTCTGAT
CTACTGCAGAGCAGGTTAGATTTTCTCCATTAACCATTGATACTAGTATTGCAAGTAAATTTAT
ATGCCTGTCTCCCCTACTTGCCTGAGCTTTTAGGGCAGGATTCTGTCTTTGAATTTTCAGTACC
TGGTATTGTGACTAAAATATAGCAAAAGCACAATAAAAAAATTTTTGAATGTTCTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_022267620	(Get FASTA)	NCBI Sequence Viewer
	XP_022267621	(Get FASTA)	NCBI Sequence Viewer
	XP_038296099	(Get FASTA)	NCBI Sequence Viewer
	XP_038296100	(Get FASTA)	NCBI Sequence Viewer
	XP_038296101	(Get FASTA)	NCBI Sequence Viewer
	XP_038370712	(Get FASTA)	NCBI Sequence Viewer
	XP_038370713	(Get FASTA)	NCBI Sequence Viewer
	XP_038370714	(Get FASTA)	NCBI Sequence Viewer
	XP_038434342	(Get FASTA)	NCBI Sequence Viewer
	XP_038434343	(Get FASTA)	NCBI Sequence Viewer
	XP_038434344	(Get FASTA)	NCBI Sequence Viewer
	XP_038498507	(Get FASTA)	NCBI Sequence Viewer
	XP_038498508	(Get FASTA)	NCBI Sequence Viewer
	XP_038498509	(Get FASTA)	NCBI Sequence Viewer
	XP_534981	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000065065.1
	ENSCAFP00000067574.1
	ENSCAFP00000074269.1
	ENSCAFP00000074480.1
	ENSCAFP00030036825.1
	ENSCAFP00845040513.1
	ENSCAFP00845040540.1
	ENSCAFP00845040565
	ENSCAFP00845040565.1
	ENSCAFP00845040572.1

RefSeq Acc Id:	XP_534981 ⟸ XM_534981
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JY98 (UniProtKB/TrEMBL), A0A8C0P7I7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRLRFPPVAVMAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENGALPV ISVMRETESQLLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKV EIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK EFRKVARVQPEFLQT hide sequence

RefSeq Acc Id:	XP_022267621 ⟸ XM_022411913
- Peptide Label:	isoform X2
- Sequence:	show sequence MWGPHHLRTLFEELSARKMSELLKKTRLLVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENE LGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT hide sequence

RefSeq Acc Id:	XP_022267620 ⟸ XM_022411912
- Peptide Label:	isoform X2
- Sequence:	show sequence MWGPHHLRTLFEELSARKMSELLKKTRLLVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENE LGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT hide sequence

RefSeq Acc Id:

ENSCAFP00000048242 ⟸ ENSCAFT00000078551

RefSeq Acc Id:

ENSCAFP00000064445 ⟸ ENSCAFT00000079178

RefSeq Acc Id:

ENSCAFP00000013333 ⟸ ENSCAFT00000014417

RefSeq Acc Id:

ENSCAFP00000065065 ⟸ ENSCAFT00000087895

RefSeq Acc Id:

ENSCAFP00000054044 ⟸ ENSCAFT00000091144

RefSeq Acc Id:	XP_038370714 ⟸ XM_038514786
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038370713 ⟸ XM_038514785
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038370712 ⟸ XM_038514784
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038498509 ⟸ XM_038642581
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038498508 ⟸ XM_038642580
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038498507 ⟸ XM_038642579
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038296101 ⟸ XM_038440173
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038296100 ⟸ XM_038440172
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038296099 ⟸ XM_038440171
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JY98 (UniProtKB/TrEMBL), A0A8C0P7I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038434344 ⟸ XM_038578416
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038434343 ⟸ XM_038578415
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038434342 ⟸ XM_038578414
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JY98 (UniProtKB/TrEMBL), A0A8C0P7I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845040565 ⟸ ENSCAFT00845051701

RefSeq Acc Id:

ENSCAFP00845040513 ⟸ ENSCAFT00845051635

RefSeq Acc Id:

ENSCAFP00845040540 ⟸ ENSCAFT00845051669

RefSeq Acc Id:

ENSCAFP00845040572 ⟸ ENSCAFT00845051710

Protein Domains

Exosome complex component CSL4 C-terminal Exosome complex component N-terminal S1 motif

Promoters

RGD ID:

13688275

Promoter ID:

EPDNEW_C6344

Type:

multiple initiation site

Name:

EXOSC1_1

Description:

exosome component 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	10,738,890 - 10,738,950	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000009068	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030022937	UniProtKB/TrEMBL
	ENSCAFG00845029157	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000087895.2	UniProtKB/TrEMBL
	ENSCAFT00000097098.1	UniProtKB/TrEMBL
	ENSCAFT00000104149.1	UniProtKB/TrEMBL
	ENSCAFT00000108463.1	UniProtKB/TrEMBL
	ENSCAFT00030042211.1	UniProtKB/TrEMBL
	ENSCAFT00845051635.1	UniProtKB/TrEMBL
	ENSCAFT00845051669.1	UniProtKB/TrEMBL
	ENSCAFT00845051701	ENTREZGENE
	ENSCAFT00845051701.1	UniProtKB/TrEMBL
	ENSCAFT00845051710.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.100	UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/TrEMBL
InterPro	Csl4	UniProtKB/TrEMBL
	EXOSC1_C	UniProtKB/TrEMBL
	Exosome_cplx_N_dom	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	S1_domain	UniProtKB/TrEMBL
NCBI Gene	EXOSC1	ENTREZGENE
PANTHER	EXOSOME COMPLEX COMPONENT CSL4	UniProtKB/TrEMBL
	PTHR12686	UniProtKB/TrEMBL
Pfam	ECR1_N	UniProtKB/TrEMBL
	EXOSC1	UniProtKB/TrEMBL
SMART	SM00316	UniProtKB/TrEMBL
Superfamily-SCOP	Ribosomal L27 protein-like	UniProtKB/TrEMBL
	SSF50249	UniProtKB/TrEMBL
UniProt	A0A8C0JY98	ENTREZGENE
	A0A8C0P7I7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q313_CANLF	UniProtKB/TrEMBL
	A0A8I3Q5T4_CANLF	UniProtKB/TrEMBL
	A0A8I3QJ01_CANLF	UniProtKB/TrEMBL
	A0A8I3QRY1_CANLF	UniProtKB/TrEMBL
	A0A8P0PQT6_CANLF	UniProtKB/TrEMBL
	A0A8P0TGN9_CANLF	UniProtKB/TrEMBL
	A0A8P0TJ34_CANLF	UniProtKB/TrEMBL
	A0A8P0TT81_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:40521	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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