STAMBPL1 (STAM binding protein like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: STAMBPL1 (STAM binding protein like 1) Canis lupus familiaris
Analyze
Symbol: STAMBPL1
Name: STAM binding protein like 1
RGD ID: 12185082
Description: ENCODES a protein that exhibits K63-linked deubiquitinase activity (inferred); metal-dependent deubiquitinase activity (inferred); metallopeptidase activity (inferred); INVOLVED IN cellular response to leucine (inferred); positive regulation of TORC1 signaling (inferred); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); genetic disease (ortholog); PTEN hamartoma tumor syndrome (ortholog); FOUND IN endosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AMSH-like protease
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12638,665,418 - 38,693,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2638,666,915 - 38,693,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2638,433,238 - 38,444,606 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02640,250,018 - 40,278,426 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2640,250,039 - 40,278,411 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12638,119,929 - 38,148,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02637,685,244 - 37,713,613 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02638,955,577 - 38,983,896 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:37756605  


Genomics

Comparative Map Data
STAMBPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12638,665,418 - 38,693,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2638,666,915 - 38,693,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2638,433,238 - 38,444,606 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02640,250,018 - 40,278,426 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2640,250,039 - 40,278,411 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12638,119,929 - 38,148,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02637,685,244 - 37,713,613 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02638,955,577 - 38,983,896 (+)NCBIUU_Cfam_GSD_1.0
STAMBPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381088,880,245 - 88,923,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1088,879,734 - 88,975,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371090,640,002 - 90,683,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361090,630,006 - 90,673,224 (+)NCBINCBI36Build 36hg18NCBI36
Celera1084,386,859 - 84,430,089 (+)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1084,274,633 - 84,317,837 (+)NCBIHuRef
CHM1_11090,922,028 - 90,965,342 (+)NCBICHM1_1
T2T-CHM13v2.01089,763,682 - 89,807,429 (+)NCBIT2T-CHM13v2.0
Stambpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,169,629 - 34,217,733 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1934,169,629 - 34,217,733 (+)EnsemblGRCm39 Ensembl
GRCm381934,190,378 - 34,240,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,192,229 - 34,240,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv371934,266,760 - 34,314,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361934,258,267 - 34,306,325 (+)NCBIMGSCv36mm8
Celera1934,968,899 - 35,017,515 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.35NCBI
Stambpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,095,695 - 241,158,225 (+)NCBIGRCr8
mRatBN7.21231,699,620 - 231,745,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,699,995 - 231,745,032 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,097,547 - 240,136,026 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,019,419 - 247,057,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,857,502 - 239,895,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,490,125 - 252,536,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,497,452 - 252,536,104 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01259,714,296 - 259,759,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1228,820,260 - 228,858,741 (+)NCBICelera
Cytogenetic Map1q52NCBI
Stambpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554254,045,725 - 4,092,019 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554254,045,789 - 4,091,942 (-)NCBIChiLan1.0ChiLan1.0
STAMBPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28100,899,526 - 100,942,825 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110100,904,841 - 100,948,140 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01085,605,651 - 85,649,268 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11089,108,953 - 89,204,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1089,109,356 - 89,152,628 (+)Ensemblpanpan1.1panPan2
Stambpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721378,454,822 - 78,499,096 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936735293,833 - 310,539 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936735293,833 - 337,839 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAMBPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14100,798,088 - 100,859,567 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114100,798,096 - 100,859,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214109,782,799 - 109,844,285 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAMBPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1982,303,521 - 82,347,235 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604842,981,644 - 43,117,930 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stambpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479115,186,030 - 15,234,162 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479115,185,185 - 15,231,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STAMBPL1
1111 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 5 10 6 12 5 3
Low 2 12 6 6 6 6 8 5 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005636648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038512582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038512583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_534780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000024871   ⟹   ENSCAFP00000023076
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2638,676,324 - 38,693,776 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060400   ⟹   ENSCAFP00000044753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2638,676,324 - 38,690,477 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086134   ⟹   ENSCAFP00000058999
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2638,666,915 - 38,690,477 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087658   ⟹   ENSCAFP00000050337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2638,676,324 - 38,692,919 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052712   ⟹   ENSCAFP00845041376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2640,250,039 - 40,278,411 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052719   ⟹   ENSCAFP00845041382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2640,251,004 - 40,277,566 (+)Ensembl
RefSeq Acc Id: XM_038437705   ⟹   XP_038293633
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02640,250,681 - 40,278,426 (+)NCBI
RefSeq Acc Id: XM_038437706   ⟹   XP_038293634
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02640,250,018 - 40,278,426 (+)NCBI
RefSeq Acc Id: XM_038459187   ⟹   XP_038315115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2638,433,238 - 38,444,606 (+)NCBI
RefSeq Acc Id: XM_038512582   ⟹   XP_038368510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12638,120,580 - 38,148,219 (+)NCBI
RefSeq Acc Id: XM_038512583   ⟹   XP_038368511
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12638,119,929 - 38,148,219 (+)NCBI
RefSeq Acc Id: XM_038576070   ⟹   XP_038431998
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02638,956,225 - 38,983,896 (+)NCBI
RefSeq Acc Id: XM_038576071   ⟹   XP_038431999
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02638,955,577 - 38,983,896 (+)NCBI
RefSeq Acc Id: XM_038640286   ⟹   XP_038496214
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02637,685,882 - 37,713,613 (+)NCBI
RefSeq Acc Id: XM_038640287   ⟹   XP_038496215
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02637,685,244 - 37,713,613 (+)NCBI
RefSeq Acc Id: ENSCAFP00000044753   ⟸   ENSCAFT00000060400
RefSeq Acc Id: ENSCAFP00000050337   ⟸   ENSCAFT00000087658
RefSeq Acc Id: ENSCAFP00000023076   ⟸   ENSCAFT00000024871
RefSeq Acc Id: ENSCAFP00000058999   ⟸   ENSCAFT00000086134
RefSeq Acc Id: XP_038368511   ⟸   XM_038512583
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038368510   ⟸   XM_038512582
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038496215   ⟸   XM_038640287
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038496214   ⟸   XM_038640286
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038293634   ⟸   XM_038437706
- Peptide Label: isoform X1
- UniProtKB: A0A8C0R883 (UniProtKB/TrEMBL),   A0A8I3Q190 (UniProtKB/TrEMBL),   A0A8C0LKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038293633   ⟸   XM_038437705
- Peptide Label: isoform X1
- UniProtKB: A0A8C0R883 (UniProtKB/TrEMBL),   A0A8I3Q190 (UniProtKB/TrEMBL),   A0A8C0LKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315115   ⟸   XM_038459187
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SVQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431999   ⟸   XM_038576071
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P6Y7 (UniProtKB/TrEMBL),   A0A8C0SVQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431998   ⟸   XM_038576070
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P6Y7 (UniProtKB/TrEMBL),   A0A8C0SVQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041382   ⟸   ENSCAFT00845052719
RefSeq Acc Id: ENSCAFP00845041376   ⟸   ENSCAFT00845052712
Protein Domains
MPN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015699 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020276 UniProtKB/TrEMBL
  ENSCAFG00040017163 UniProtKB/TrEMBL
  ENSCAFG00845029757 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000087658.2 UniProtKB/TrEMBL
  ENSCAFT00030037202.1 UniProtKB/TrEMBL
  ENSCAFT00030037265.1 UniProtKB/TrEMBL
  ENSCAFT00040031701.1 UniProtKB/TrEMBL
  ENSCAFT00040031729.1 UniProtKB/TrEMBL
  ENSCAFT00845052712 ENTREZGENE
  ENSCAFT00845052712.1 UniProtKB/TrEMBL
  ENSCAFT00845052719 ENTREZGENE
  ENSCAFT00845052719.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
InterPro JAMM/MPN+_dom UniProtKB/TrEMBL
  MPN UniProtKB/TrEMBL
  STAMBP/STALP-like_MPN UniProtKB/TrEMBL
  USP8_dimer UniProtKB/TrEMBL
NCBI Gene STAMBPL1 ENTREZGENE
PANTHER AMSH-LIKE PROTEASE UniProtKB/TrEMBL
  AMSH-LIKE PROTEASE UniProtKB/TrEMBL
Pfam JAB UniProtKB/TrEMBL
  USP8_dimer UniProtKB/TrEMBL
PROSITE MPN UniProtKB/TrEMBL
SMART JAB_MPN UniProtKB/TrEMBL
Superfamily-SCOP JAB1/MPN domain UniProtKB/TrEMBL
  USP8 N-terminal domain-like UniProtKB/TrEMBL
UniProt A0A8C0LKA9 ENTREZGENE
  A0A8C0NVM8_CANLF UniProtKB/TrEMBL
  A0A8C0P6Y7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R883 ENTREZGENE
  A0A8C0SVQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q190 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q4H8_CANLF UniProtKB/TrEMBL
  A0A8P0T2Y6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46877 ENTREZGENE