MIR206 (microRNA mir-206) - Rat Genome Database

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Gene: MIR206 (microRNA mir-206) Canis lupus familiaris
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Symbol: MIR206
Name: microRNA mir-206
RGD ID: 12182522
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-206; microRNA 206
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11219,805,523 - 19,805,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1219,805,523 - 19,805,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,701,736 - 19,701,795 (+)NCBI
ROS_Cfam_1.01220,304,504 - 20,304,563 (+)NCBI
ROS_Cfam_1.0 Ensembl1220,304,504 - 20,304,563 (+)Ensembl
UMICH_Zoey_3.11219,809,950 - 19,810,009 (+)NCBI
UNSW_CanFamBas_1.01219,912,903 - 19,912,962 (+)NCBI
UU_Cfam_GSD_1.01220,050,920 - 20,050,979 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR206
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11219,805,523 - 19,805,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1219,805,523 - 19,805,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,701,736 - 19,701,795 (+)NCBI
ROS_Cfam_1.01220,304,504 - 20,304,563 (+)NCBI
ROS_Cfam_1.0 Ensembl1220,304,504 - 20,304,563 (+)Ensembl
UMICH_Zoey_3.11219,809,950 - 19,810,009 (+)NCBI
UNSW_CanFamBas_1.01219,912,903 - 19,912,962 (+)NCBI
UU_Cfam_GSD_1.01220,050,920 - 20,050,979 (+)NCBI
MIR206
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,144,349 - 52,144,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl652,144,349 - 52,144,434 (+)EnsemblGRCh38hg38GRCh38
GRCh37652,009,147 - 52,009,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,117,105 - 52,117,190 (+)NCBINCBI36hg18NCBI36
Celera653,670,284 - 53,670,369 (+)NCBI
Cytogenetic Map6p12.2NCBI
HuRef651,840,140 - 51,840,225 (+)NCBIHuRef
CHM1_1652,011,355 - 52,011,440 (+)NCBICHM1_1
T2T-CHM13v2.0651,983,057 - 51,983,142 (+)NCBI
Mir206
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,749,234 - 20,749,306 (+)NCBIGRCm39mm39
GRCm39 Ensembl120,749,234 - 20,749,306 (+)Ensembl
GRCm38120,679,010 - 20,679,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,679,010 - 20,679,082 (+)EnsemblGRCm38mm10GRCm38
MGSCv37120,669,091 - 20,669,163 (+)NCBIGRCm37mm9NCBIm37
Celera120,553,851 - 20,553,923 (+)NCBICelera
Cytogenetic Map1A4NCBI
Mir206
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2923,094,249 - 23,094,332 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl923,094,249 - 23,094,332 (+)Ensembl
Rnor_6.0926,791,764 - 26,791,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl926,791,764 - 26,791,847 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,648,214 - 25,648,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera920,674,100 - 20,674,183 (+)NCBICelera
Cytogenetic Map9q13NCBI
MIR206
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl745,976,293 - 45,976,372 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1745,976,293 - 45,976,372 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,426,445 - 52,426,524 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low
Below cutoff 5 5 22 6 6 6 6 11 8 10 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000039983
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1219,805,523 - 19,805,582 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015341
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1220,304,504 - 20,304,563 (+)Ensembl
RefSeq Acc Id: NR_049233
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11219,805,523 - 19,805,582 (+)NCBI
Dog10K_Boxer_Tasha1219,701,736 - 19,701,795 (+)NCBI
ROS_Cfam_1.01220,304,504 - 20,304,563 (+)NCBI
UMICH_Zoey_3.11219,809,950 - 19,810,009 (+)NCBI
UNSW_CanFamBas_1.01219,912,903 - 19,912,962 (+)NCBI
UU_Cfam_GSD_1.01220,050,920 - 20,050,979 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025700 Ensembl
  ENSCAFG00845008737 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845015341 ENTREZGENE
miRBase MI0008002 ENTREZGENE
NCBI Gene MIR206 ENTREZGENE
RNAcentral URS000034B6F5 RNACentral
  URS00007E343C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR206  microRNA mir-206    microRNA 206  Symbol and/or name change 5135510 APPROVED