FZD9 (frizzled class receptor 9) - Rat Genome Database

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Gene: FZD9 (frizzled class receptor 9) Canis lupus familiaris
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Symbol: FZD9
Name: frizzled class receptor 9
RGD ID: 12180664
Description: ENCODES a protein that exhibits Wnt receptor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); learning or memory (ortholog); neuroblast proliferation (ortholog); PARTICIPATES IN Wnt signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); intestinal volvulus (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: frizzled 9, seven transmembrane spanning receptor; frizzled family receptor 9; frizzled homolog 9; frizzled-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,782,394 - 6,784,565 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,782,774 - 6,784,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,479,582 - 8,481,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,597,879 - 6,600,019 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,598,235 - 6,600,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,573,034 - 6,575,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,535,346 - 6,537,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,698,260 - 6,700,400 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
FZD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,782,394 - 6,784,565 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,782,774 - 6,784,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,479,582 - 8,481,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,597,879 - 6,600,019 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,598,235 - 6,600,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,573,034 - 6,575,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,535,346 - 6,537,484 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,698,260 - 6,700,400 (-)NCBIUU_Cfam_GSD_1.0
FZD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,433,778 - 73,436,120 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl773,433,778 - 73,436,120 (+)EnsemblGRCh38hg38GRCh38
GRCh37772,848,108 - 72,850,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,486,045 - 72,488,386 (+)NCBINCBI36Build 36hg18NCBI36
Build 34772,292,963 - 72,295,149NCBI
Celera768,326,020 - 68,328,361 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,729,438 - 68,731,779 (+)NCBIHuRef
CHM1_1772,993,577 - 72,995,918 (+)NCBICHM1_1
T2T-CHM13v2.0774,634,272 - 74,636,614 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,181,181 - 72,183,522 (+)NCBI
Fzd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,277,792 - 135,279,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,277,792 - 135,280,084 (-)EnsemblGRCm39 Ensembl
GRCm385135,248,938 - 135,251,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,248,938 - 135,251,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv375135,724,808 - 135,726,917 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,533,564 - 135,535,674 (-)NCBIMGSCv36mm8
Celera5132,260,609 - 132,262,718 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.08NCBI
Fzd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21221,427,084 - 21,429,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,427,084 - 21,429,398 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,568,651 - 22,570,965 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01223,180,980 - 23,183,294 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01222,247,456 - 22,249,770 (+)NCBIRnor_WKY
Rnor_6.01224,473,981 - 24,476,295 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,473,981 - 24,476,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,471,284 - 26,473,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,581,510 - 22,583,824 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,572,254 - 22,574,569 (+)NCBI
Celera1223,189,657 - 23,191,971 (+)NCBICelera
Cytogenetic Map12q12NCBI
Fzd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,246,324 - 14,247,550 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,245,994 - 14,247,551 (-)NCBIChiLan1.0ChiLan1.0
FZD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1780,588,167 - 80,590,337 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,588,167 - 80,590,337 (+)Ensemblpanpan1.1panPan2
Fzd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,326,748 - 131,328,721 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,707,840 - 2,709,498 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365432,707,846 - 2,709,819 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FZD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,754,783 - 10,757,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,753,294 - 10,762,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,454,083 - 10,460,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FZD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,621,434 - 9,623,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,621,770 - 9,623,545 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,849,337 - 6,851,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fzd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,323,817 - 14,325,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,323,445 - 14,325,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FZD9
12 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 19 3 6 3 6 6 12 8 7 6
Below cutoff 5 3 3 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000020894   ⟹   ENSCAFP00000019400
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl66,782,774 - 6,784,558 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006324   ⟹   ENSCAFP00845005021
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl66,598,235 - 6,600,019 (-)Ensembl
RefSeq Acc Id: XM_038477868   ⟹   XP_038333796
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.166,573,034 - 6,575,174 (-)NCBI
RefSeq Acc Id: XM_038539122   ⟹   XP_038395050
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.066,698,260 - 6,700,400 (-)NCBI
RefSeq Acc Id: XM_038603208   ⟹   XP_038459136
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.066,535,346 - 6,537,484 (-)NCBI
RefSeq Acc Id: XM_038667904   ⟹   XP_038523832
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.066,597,879 - 6,600,019 (-)NCBI
RefSeq Acc Id: XM_546927   ⟹   XP_546927
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.166,782,394 - 6,784,565 (-)NCBI
Dog10K_Boxer_Tasha68,479,582 - 8,481,722 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038333796 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038523832 (Get FASTA)   NCBI Sequence Viewer  
  XP_546927 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_546927   ⟸   XM_546927
- UniProtKB: E2RAF3 (UniProtKB/TrEMBL),   A0A8C0KI92 (UniProtKB/TrEMBL),   A0A8P0SHS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019400   ⟸   ENSCAFT00000020894
RefSeq Acc Id: XP_038333796   ⟸   XM_038477868
RefSeq Acc Id: XP_038459136   ⟸   XM_038603208
RefSeq Acc Id: XP_038523832   ⟸   XM_038667904
- UniProtKB: A0A8I3MVD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395050   ⟸   XM_038539122
RefSeq Acc Id: ENSCAFP00845005021   ⟸   ENSCAFT00845006324
Protein Domains
FZ   G_PROTEIN_RECEP_F2_4

Promoters
RGD ID:13683508
Promoter ID:EPDNEW_C1576
Type:multiple initiation site
Name:FZD9_1
Description:frizzled class receptor 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.166,784,531 - 6,784,591EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013159 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845003552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000019400.3 UniProtKB/TrEMBL
  ENSCAFP00845005021 ENTREZGENE
  ENSCAFP00845005021.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020894.4 UniProtKB/TrEMBL
  ENSCAFT00845006324 ENTREZGENE
  ENSCAFT00845006324.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
InterPro Frizzled/SFRP UniProtKB/TrEMBL
  Frizzled/Smoothened_TM UniProtKB/TrEMBL
  Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
NCBI Gene FZD9 ENTREZGENE
PANTHER PTHR11309 UniProtKB/TrEMBL
Pfam Frizzled UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
PRINTS FRIZZLED UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
SMART FRI UniProtKB/TrEMBL
  Frizzled UniProtKB/TrEMBL
Superfamily-SCOP SSF63501 UniProtKB/TrEMBL
UniProt A0A8C0KI92 ENTREZGENE
  A0A8I3MVD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SHS3 ENTREZGENE, UniProtKB/TrEMBL
  E2RAF3 ENTREZGENE
VGNC ID VGNC:41035 ENTREZGENE