SAP130 (Sin3A associated protein 130) - Rat Genome Database

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Gene: SAP130 (Sin3A associated protein 130) Canis lupus familiaris
Analyze
Symbol: SAP130
Name: Sin3A associated protein 130
RGD ID: 12180258
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); congenital heart disease (ortholog); genetic disease (ortholog); FOUND IN nuclear speck (inferred); nucleus (inferred); Sin3-type complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone deacetylase complex subunit SAP130
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,590,059 - 22,673,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1922,837,203 - 22,920,769 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01923,916,058 - 23,999,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,571,364 - 22,654,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01922,815,482 - 22,898,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01923,946,514 - 24,029,716 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SAP130
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,590,059 - 22,673,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1922,837,203 - 22,920,769 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01923,916,058 - 23,999,273 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,571,364 - 22,654,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01922,815,482 - 22,898,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01923,946,514 - 24,029,716 (+)NCBIUU_Cfam_GSD_1.0
SAP130
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,941,222 - 128,028,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,941,217 - 128,028,120 (-)EnsemblGRCh38hg38GRCh38
GRCh372128,698,796 - 128,785,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,415,266 - 128,501,337 (-)NCBINCBI36Build 36hg18NCBI36
Celera2122,009,747 - 122,095,715 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2121,004,579 - 121,090,650 (-)NCBIHuRef
CHM1_12128,704,142 - 128,790,201 (-)NCBICHM1_1
T2T-CHM13v2.02128,376,486 - 128,463,363 (-)NCBIT2T-CHM13v2.0
Sap130
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391831,767,436 - 31,856,121 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1831,767,424 - 31,856,114 (+)EnsemblGRCm39 Ensembl
GRCm381831,634,368 - 31,723,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,634,371 - 31,723,061 (+)EnsemblGRCm38mm10GRCm38
MGSCv371831,794,037 - 31,882,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361831,777,393 - 31,866,071 (+)NCBIMGSCv36mm8
Celera1832,120,764 - 32,206,902 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.81NCBI
Sap130
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,518,773 - 23,619,840 (+)NCBIGRCr8
mRatBN7.21823,244,337 - 23,345,368 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,267,256 - 23,345,359 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01824,397,523 - 24,497,831 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,397,369 - 24,497,832 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,114,972 - 24,215,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,053,607 - 24,132,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11824,055,529 - 24,158,546 (+)NCBI
Celera1822,998,465 - 23,098,152 (+)NCBICelera
Cytogenetic Map18p12NCBI
Sap130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,529,373 - 2,602,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554592,529,373 - 2,602,864 (+)NCBIChiLan1.0ChiLan1.0
SAP130
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,612,348 - 47,700,156 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,627,328 - 47,715,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B32,243,576 - 32,332,080 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,609,262 - 128,696,505 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B128,609,262 - 128,696,505 (-)Ensemblpanpan1.1panPan2
Sap130
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,231,076 - 98,302,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646943,317,008 - 43,388,184 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646943,315,175 - 43,386,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP130
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,312,418 - 59,410,302 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11559,312,401 - 59,408,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21566,024,053 - 66,121,277 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAP130
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1102,196,477 - 2,279,648 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl102,197,622 - 2,279,703 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606120,483,390 - 20,568,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SAP130
923 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 8 1
Low 5 5 17 6 6 6 6 6 7 9 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005631859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005631860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000006901   ⟹   ENSCAFP00000006388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000047734   ⟹   ENSCAFP00000039716
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081842   ⟹   ENSCAFP00000043891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087115   ⟹   ENSCAFP00000052113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091370   ⟹   ENSCAFP00000045252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035201   ⟹   ENSCAFP00845027554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035395   ⟹   ENSCAFP00845027706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035611   ⟹   ENSCAFP00845027857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035802   ⟹   ENSCAFP00845028010
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1923,916,983 - 23,999,265 (+)Ensembl
RefSeq Acc Id: XM_005631859   ⟹   XP_005631916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,059 - 22,672,761 (+)NCBI
Dog10K_Boxer_Tasha1922,837,203 - 22,919,987 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005631860   ⟹   XP_005631917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,901 - 22,673,543 (+)NCBI
Dog10K_Boxer_Tasha1922,838,059 - 22,920,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406004   ⟹   XP_022261712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,900 - 22,673,543 (+)NCBI
Dog10K_Boxer_Tasha1922,838,058 - 22,920,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406005   ⟹   XP_022261713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,966 - 22,672,761 (+)NCBI
Dog10K_Boxer_Tasha1922,838,128 - 22,919,987 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406006   ⟹   XP_022261714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,901 - 22,673,543 (+)NCBI
Dog10K_Boxer_Tasha1922,838,059 - 22,920,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038425916   ⟹   XP_038281844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,983 - 23,999,273 (+)NCBI
RefSeq Acc Id: XM_038425917   ⟹   XP_038281845
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,913 - 23,999,273 (+)NCBI
RefSeq Acc Id: XM_038425918   ⟹   XP_038281846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,058 - 23,998,491 (+)NCBI
RefSeq Acc Id: XM_038425919   ⟹   XP_038281847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,983 - 23,998,491 (+)NCBI
RefSeq Acc Id: XM_038425920   ⟹   XP_038281848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,914 - 23,999,273 (+)NCBI
RefSeq Acc Id: XM_038425921   ⟹   XP_038281849
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,913 - 23,999,273 (+)NCBI
RefSeq Acc Id: XM_038425922   ⟹   XP_038281850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01923,916,914 - 23,999,273 (+)NCBI
RefSeq Acc Id: XM_038454688   ⟹   XP_038310616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1922,838,058 - 22,920,769 (+)NCBI
RefSeq Acc Id: XM_038502129   ⟹   XP_038358057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,289 - 22,654,568 (+)NCBI
RefSeq Acc Id: XM_038502130   ⟹   XP_038358058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,219 - 22,654,568 (+)NCBI
RefSeq Acc Id: XM_038502131   ⟹   XP_038358059
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,571,364 - 22,653,786 (+)NCBI
RefSeq Acc Id: XM_038502132   ⟹   XP_038358060
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,289 - 22,653,786 (+)NCBI
RefSeq Acc Id: XM_038502133   ⟹   XP_038358061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,220 - 22,654,568 (+)NCBI
RefSeq Acc Id: XM_038502134   ⟹   XP_038358062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,219 - 22,654,568 (+)NCBI
RefSeq Acc Id: XM_038502135   ⟹   XP_038358063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11922,572,220 - 22,654,568 (+)NCBI
RefSeq Acc Id: XM_038564813   ⟹   XP_038420741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,439 - 24,029,716 (+)NCBI
RefSeq Acc Id: XM_038564814   ⟹   XP_038420742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,369 - 24,029,716 (+)NCBI
RefSeq Acc Id: XM_038564815   ⟹   XP_038420743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,946,514 - 24,028,934 (+)NCBI
RefSeq Acc Id: XM_038564816   ⟹   XP_038420744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,439 - 24,028,934 (+)NCBI
RefSeq Acc Id: XM_038564817   ⟹   XP_038420745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,370 - 24,029,716 (+)NCBI
RefSeq Acc Id: XM_038564818   ⟹   XP_038420746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,369 - 24,029,716 (+)NCBI
RefSeq Acc Id: XM_038564819   ⟹   XP_038420747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01923,947,370 - 24,029,716 (+)NCBI
RefSeq Acc Id: XM_038628909   ⟹   XP_038484837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,407 - 22,898,797 (+)NCBI
RefSeq Acc Id: XM_038628910   ⟹   XP_038484838
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,337 - 22,898,797 (+)NCBI
RefSeq Acc Id: XM_038628911   ⟹   XP_038484839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,815,482 - 22,898,015 (+)NCBI
RefSeq Acc Id: XM_038628912   ⟹   XP_038484840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,407 - 22,898,015 (+)NCBI
RefSeq Acc Id: XM_038628913   ⟹   XP_038484841
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,338 - 22,898,797 (+)NCBI
RefSeq Acc Id: XM_038628914   ⟹   XP_038484842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,337 - 22,898,797 (+)NCBI
RefSeq Acc Id: XM_038628915   ⟹   XP_038484843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01922,816,338 - 22,898,797 (+)NCBI
RefSeq Acc Id: XM_533311   ⟹   XP_533311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,966 - 22,673,543 (+)NCBI
Dog10K_Boxer_Tasha1922,838,128 - 22,920,769 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005631916 (Get FASTA)   NCBI Sequence Viewer  
  XP_005631917 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261712 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261713 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261714 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281844 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281845 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281849 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358057 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358058 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358060 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420746 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484837 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484838 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484842 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484843 (Get FASTA)   NCBI Sequence Viewer  
  XP_533311 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000006388.5
  ENSCAFP00000039716.3
  ENSCAFP00000043891.2
  ENSCAFP00000045252.2
  ENSCAFP00000052113.2
  ENSCAFP00030020052.1
  ENSCAFP00030020175.1
  ENSCAFP00040030049.1
  ENSCAFP00040030086.1
  ENSCAFP00845027554
  ENSCAFP00845027554.1
  ENSCAFP00845027706.1
  ENSCAFP00845027857
  ENSCAFP00845027857.1
  ENSCAFP00845028010
  ENSCAFP00845028010.1
RefSeq Acc Id: XP_005631916   ⟸   XM_005631859
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S1F3 (UniProtKB/TrEMBL),   A0A8P0NVH7 (UniProtKB/TrEMBL),   A0A8C0JRI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005631917   ⟸   XM_005631860
- Peptide Label: isoform X5
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_533311   ⟸   XM_533311
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JSA8 (UniProtKB/TrEMBL),   A0A8C0Z1N8 (UniProtKB/TrEMBL),   A0A8I3PBT2 (UniProtKB/TrEMBL),   A0A8C0JRI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261712   ⟸   XM_022406004
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261714   ⟸   XM_022406006
- Peptide Label: isoform X7
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261713   ⟸   XM_022406005
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Z1K7 (UniProtKB/TrEMBL),   A0A8C0JQI2 (UniProtKB/TrEMBL),   A0A8I3PB50 (UniProtKB/TrEMBL),   A0A8P0S9X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000052113   ⟸   ENSCAFT00000087115
RefSeq Acc Id: ENSCAFP00000045252   ⟸   ENSCAFT00000091370
RefSeq Acc Id: ENSCAFP00000043891   ⟸   ENSCAFT00000081842
RefSeq Acc Id: ENSCAFP00000039716   ⟸   ENSCAFT00000047734
RefSeq Acc Id: ENSCAFP00000006388   ⟸   ENSCAFT00000006901
RefSeq Acc Id: XP_038358059   ⟸   XM_038502131
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038358058   ⟸   XM_038502130
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038358062   ⟸   XM_038502134
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038358061   ⟸   XM_038502133
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038358063   ⟸   XM_038502135
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038358057   ⟸   XM_038502129
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038358060   ⟸   XM_038502132
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038484839   ⟸   XM_038628911
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038484838   ⟸   XM_038628910
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038484842   ⟸   XM_038628914
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038484841   ⟸   XM_038628913
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038484843   ⟸   XM_038628915
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038484837   ⟸   XM_038628909
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038484840   ⟸   XM_038628912
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038281846   ⟸   XM_038425918
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S1F3 (UniProtKB/TrEMBL),   A0A8P0NVH7 (UniProtKB/TrEMBL),   A0A8C0JRI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281845   ⟸   XM_038425917
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281849   ⟸   XM_038425921
- Peptide Label: isoform X6
- UniProtKB: A0A8P0T4R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281848   ⟸   XM_038425920
- Peptide Label: isoform X5
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281850   ⟸   XM_038425922
- Peptide Label: isoform X7
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281844   ⟸   XM_038425916
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JSA8 (UniProtKB/TrEMBL),   A0A8C0Z1N8 (UniProtKB/TrEMBL),   A0A8I3PBT2 (UniProtKB/TrEMBL),   A0A8C0JRI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281847   ⟸   XM_038425919
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Z1K7 (UniProtKB/TrEMBL),   A0A8C0JQI2 (UniProtKB/TrEMBL),   A0A8I3PB50 (UniProtKB/TrEMBL),   A0A8P0S9X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310616   ⟸   XM_038454688
- Peptide Label: isoform X6
- UniProtKB: A0A8P0T4R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420743   ⟸   XM_038564815
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JRI4 (UniProtKB/TrEMBL),   A0A8I3S1F3 (UniProtKB/TrEMBL),   A0A8P0NVH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420742   ⟸   XM_038564814
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420746   ⟸   XM_038564818
- Peptide Label: isoform X6
- UniProtKB: A0A8P0T4R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420745   ⟸   XM_038564817
- Peptide Label: isoform X5
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420747   ⟸   XM_038564819
- Peptide Label: isoform X7
- UniProtKB: A0A8I3S4B2 (UniProtKB/TrEMBL),   A0A8P0SX29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420741   ⟸   XM_038564813
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRI4 (UniProtKB/TrEMBL),   A0A8C0JSA8 (UniProtKB/TrEMBL),   A0A8C0Z1N8 (UniProtKB/TrEMBL),   A0A8I3PBT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420744   ⟸   XM_038564816
- Peptide Label: isoform X4
- UniProtKB: A0A8C0JQI2 (UniProtKB/TrEMBL),   A0A8C0Z1K7 (UniProtKB/TrEMBL),   A0A8I3PB50 (UniProtKB/TrEMBL),   A0A8P0S9X2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845028010   ⟸   ENSCAFT00845035802
RefSeq Acc Id: ENSCAFP00845027554   ⟸   ENSCAFT00845035201
RefSeq Acc Id: ENSCAFP00845027706   ⟸   ENSCAFT00845035395
RefSeq Acc Id: ENSCAFP00845027857   ⟸   ENSCAFT00845035611
Promoters
RGD ID:13686703
Promoter ID:EPDNEW_C4771
Type:initiation region
Name:SAP130_1
Description:Sin3A associated protein 130
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11922,590,083 - 22,590,143EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004290 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012070 UniProtKB/TrEMBL
  ENSCAFG00040018392 UniProtKB/TrEMBL
  ENSCAFG00845019767 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006901.6 UniProtKB/TrEMBL
  ENSCAFT00000047734.3 UniProtKB/TrEMBL
  ENSCAFT00000081842.2 UniProtKB/TrEMBL
  ENSCAFT00000087115.2 UniProtKB/TrEMBL
  ENSCAFT00000091370.2 UniProtKB/TrEMBL
  ENSCAFT00030022987.1 UniProtKB/TrEMBL
  ENSCAFT00030023133.1 UniProtKB/TrEMBL
  ENSCAFT00040034515.1 UniProtKB/TrEMBL
  ENSCAFT00040034559.1 UniProtKB/TrEMBL
  ENSCAFT00845035201 ENTREZGENE
  ENSCAFT00845035201.1 UniProtKB/TrEMBL
  ENSCAFT00845035395.1 UniProtKB/TrEMBL
  ENSCAFT00845035611 ENTREZGENE
  ENSCAFT00845035611.1 UniProtKB/TrEMBL
  ENSCAFT00845035802 ENTREZGENE
  ENSCAFT00845035802.1 UniProtKB/TrEMBL
InterPro His_deAcase_cplx_SAP130 UniProtKB/TrEMBL
  SAP130_C UniProtKB/TrEMBL
NCBI Gene SAP130 ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 UniProtKB/TrEMBL
  PTHR13497 UniProtKB/TrEMBL
Pfam SAP130_C UniProtKB/TrEMBL
UniProt A0A8C0JQI2 ENTREZGENE
  A0A8C0JRI4 ENTREZGENE
  A0A8C0JSA8 ENTREZGENE
  A0A8C0Z1K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z1N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PB50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PBT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S1F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S4B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NVH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S9X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SX29 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T4R1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45858 ENTREZGENE