IPPK (inositol-pentakisphosphate 2-kinase) - Rat Genome Database

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Gene: IPPK (inositol-pentakisphosphate 2-kinase) Canis lupus familiaris
Analyze
Symbol: IPPK
Name: inositol-pentakisphosphate 2-kinase
RGD ID: 12178942
Description: ENCODES a protein that exhibits ATP binding (inferred); molecular adaptor activity (inferred); INVOLVED IN positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (inferred); PARTICIPATES IN inositol metabolic pathway; inositol phosphate metabolic pathway; FOUND IN nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,760,104 - 98,800,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,759,976 - 98,800,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,153,945 - 99,194,737 (+)NCBI
ROS_Cfam_1.0199,376,891 - 99,417,695 (+)NCBI
UMICH_Zoey_3.1198,989,996 - 99,030,788 (+)NCBI
UNSW_CanFamBas_1.0198,725,536 - 98,766,275 (+)NCBI
UU_Cfam_GSD_1.0199,481,198 - 99,521,965 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
IPPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,760,104 - 98,800,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,759,976 - 98,800,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,153,945 - 99,194,737 (+)NCBI
ROS_Cfam_1.0199,376,891 - 99,417,695 (+)NCBI
UMICH_Zoey_3.1198,989,996 - 99,030,788 (+)NCBI
UNSW_CanFamBas_1.0198,725,536 - 98,766,275 (+)NCBI
UU_Cfam_GSD_1.0199,481,198 - 99,521,965 (+)NCBI
IPPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl992,613,183 - 92,670,131 (-)EnsemblGRCh38hg38GRCh38
GRCh38992,613,183 - 92,670,259 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37995,375,465 - 95,432,413 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,415,287 - 94,472,368 (-)NCBINCBI36hg18NCBI36
Build 34992,455,020 - 92,512,102NCBI
Celera965,817,524 - 65,874,595 (-)NCBI
Cytogenetic Map9q22.31NCBI
HuRef965,053,819 - 65,110,851 (-)NCBIHuRef
CHM1_1995,521,868 - 95,578,933 (-)NCBICHM1_1
Ippk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,574,673 - 49,618,050 (+)NCBIGRCm39mm39
GRCm39 Ensembl1349,574,725 - 49,618,049 (+)Ensembl
GRCm381349,421,198 - 49,464,574 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,421,249 - 49,464,573 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,516,680 - 49,558,359 (+)NCBIGRCm37mm9NCBIm37
MGSCv361349,433,248 - 49,474,927 (+)NCBImm8
Celera1350,510,826 - 50,552,610 (+)NCBICelera
Cytogenetic Map13A5NCBI
Ippk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21715,190,191 - 15,235,203 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1715,190,265 - 15,229,541 (-)Ensembl
Rnor_6.01715,604,148 - 15,643,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,604,145 - 15,643,489 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,662,547 - 17,701,642 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,147,481 - 21,185,525 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11721,147,480 - 21,185,525 (-)NCBI
Celera1714,922,371 - 14,960,214 (-)NCBICelera
Cytogenetic Map17p14NCBI
Ippk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,170,164 - 5,219,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,170,164 - 5,219,130 (+)NCBIChiLan1.0ChiLan1.0
IPPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1991,808,757 - 91,864,773 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,808,757 - 91,864,773 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0963,737,324 - 63,793,348 (-)NCBIMhudiblu_PPA_v0panPan3
Ippk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,984,122 - 8,037,682 (-)NCBI
SpeTri2.0NW_0049364872,200,588 - 2,254,130 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,308,005 - 42,368,224 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,308,001 - 42,368,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,492,552 - 43,500,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IPPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,122,293 - 103,184,453 (-)NCBI
ChlSab1.1 Ensembl12103,123,557 - 103,184,174 (-)Ensembl
Vero_WHO_p1.0NW_02366603891,394,542 - 91,456,260 (-)NCBI
Ippk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248683,722,713 - 3,781,639 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 9 6 10 10 1
Low 5 5 13 6 6 6 6 2 8 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000003601   ⟹   ENSCAFP00000003335
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl198,759,976 - 98,800,833 (+)Ensembl
RefSeq Acc Id: XM_038466686   ⟹   XP_038322614
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1198,989,996 - 99,030,788 (+)NCBI
RefSeq Acc Id: XM_038527407   ⟹   XP_038383335
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0199,481,198 - 99,521,965 (+)NCBI
RefSeq Acc Id: XM_038591706   ⟹   XP_038447634
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0198,725,536 - 98,766,275 (+)NCBI
RefSeq Acc Id: XM_038655500   ⟹   XP_038511428
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0199,376,891 - 99,417,695 (+)NCBI
RefSeq Acc Id: XM_541331   ⟹   XP_541331
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,760,104 - 98,800,891 (+)NCBI
Dog10K_Boxer_Tasha199,153,945 - 99,194,737 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038322614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038383335 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447634 (Get FASTA)   NCBI Sequence Viewer  
  XP_038511428 (Get FASTA)   NCBI Sequence Viewer  
  XP_541331 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_541331   ⟸   XM_541331
- UniProtKB: E2RPI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000003335   ⟸   ENSCAFT00000003601
RefSeq Acc Id: XP_038322614   ⟸   XM_038466686
RefSeq Acc Id: XP_038447634   ⟸   XM_038591706
RefSeq Acc Id: XP_038511428   ⟸   XM_038655500
RefSeq Acc Id: XP_038383335   ⟸   XM_038527407

Promoters
RGD ID:13682125
Promoter ID:EPDNEW_C193
Type:multiple initiation site
Name:IPPK_1
Description:inositol-pentakisphosphate 2-kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1198,760,120 - 98,760,180EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002293 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000003335 ENTREZGENE
NCBI Gene IPPK ENTREZGENE
UniProt E2RPI6 ENTREZGENE
VGNC ID VGNC:42071 ENTREZGENE