KRTCAP3 (keratinocyte associated protein 3) - Rat Genome Database

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Gene: KRTCAP3 (keratinocyte associated protein 3) Canis lupus familiaris
Analyze
Symbol: KRTCAP3
Name: keratinocyte associated protein 3
RGD ID: 12172346
Description: ASSOCIATED WITH Bardet-Biedl syndrome 20 (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratinocyte-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,387,682 - 21,389,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,387,781 - 21,389,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,279,465 - 21,281,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,709,066 - 21,710,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,709,148 - 21,710,749 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,395,667 - 21,397,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,405,146 - 21,406,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,453,403 - 21,455,088 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
KRTCAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,387,682 - 21,389,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,387,781 - 21,389,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,279,465 - 21,281,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,709,066 - 21,710,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,709,148 - 21,710,749 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,395,667 - 21,397,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,405,146 - 21,406,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,453,403 - 21,455,088 (+)NCBIUU_Cfam_GSD_1.0
KRTCAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,442,381 - 27,446,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,442,366 - 27,446,481 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,665,248 - 27,669,348 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,518,767 - 27,520,668 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,576,913 - 27,578,814NCBI
Celera227,511,407 - 27,515,522 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,407,121 - 27,411,236 (+)NCBIHuRef
CHM1_1227,595,145 - 27,599,260 (+)NCBICHM1_1
T2T-CHM13v2.0227,484,734 - 27,488,837 (+)NCBIT2T-CHM13v2.0
Krtcap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,409,050 - 31,410,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,409,035 - 31,410,546 (+)EnsemblGRCm39 Ensembl
GRCm38531,251,670 - 31,253,202 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,251,691 - 31,253,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,554,079 - 31,555,570 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,528,297 - 31,529,778 (+)NCBIMGSCv36mm8
Celera528,730,858 - 28,732,349 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Krtcap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,840,906 - 30,842,500 (-)NCBIGRCr8
mRatBN7.2625,120,938 - 25,122,522 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,120,938 - 25,122,507 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,421,776 - 25,423,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,737,668 - 25,739,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,217,026 - 25,218,605 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,485,126 - 26,486,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,485,126 - 26,486,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,304,329 - 36,305,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera624,613,034 - 24,614,603 (-)NCBICelera
Cytogenetic Map6q14NCBI
Krtcap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,416,732 - 9,418,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,416,732 - 9,418,523 (+)NCBIChiLan1.0ChiLan1.0
KRTCAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,066,444 - 99,068,404 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,070,412 - 99,072,372 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,446,103 - 27,448,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,534,580 - 27,536,458 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,534,571 - 27,536,458 (+)Ensemblpanpan1.1panPan2
Krtcap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,692,737 - 65,694,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,142,970 - 5,146,778 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,145,237 - 5,146,904 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRTCAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,718,584 - 111,720,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,718,581 - 111,720,245 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,753,140 - 118,754,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRTCAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,171,335 - 80,173,295 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,167,492 - 80,174,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,980,831 - 31,991,039 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krtcap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,508,599 - 9,509,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,508,571 - 9,510,376 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KRTCAP3
19 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 11 4 6 10
Low 1 5 4 2 1
Below cutoff 5 6 6 2 6 5 5 8 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000007848   ⟹   ENSCAFP00000007274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1721,387,781 - 21,389,383 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845014064   ⟹   ENSCAFP00845010900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1721,709,148 - 21,710,749 (+)Ensembl
RefSeq Acc Id: XM_005630264   ⟹   XP_005630321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11721,387,682 - 21,389,385 (+)NCBI
Dog10K_Boxer_Tasha1721,279,465 - 21,281,151 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038498549   ⟹   XP_038354477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11721,395,668 - 21,397,353 (+)NCBI
RefSeq Acc Id: XM_038498550   ⟹   XP_038354478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11721,395,667 - 21,397,353 (+)NCBI
RefSeq Acc Id: XM_038561102   ⟹   XP_038417030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01721,453,404 - 21,455,088 (+)NCBI
RefSeq Acc Id: XM_038561103   ⟹   XP_038417031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01721,453,403 - 21,455,088 (+)NCBI
RefSeq Acc Id: XM_038625173   ⟹   XP_038481101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01721,405,147 - 21,406,831 (+)NCBI
RefSeq Acc Id: XM_038625174   ⟹   XP_038481102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01721,405,146 - 21,406,831 (+)NCBI
RefSeq Acc Id: XM_038691058   ⟹   XP_038546986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01721,709,067 - 21,710,751 (+)NCBI
RefSeq Acc Id: XM_038691059   ⟹   XP_038546987
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01721,709,066 - 21,710,751 (+)NCBI
RefSeq Acc Id: XM_848706   ⟹   XP_853799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11721,387,682 - 21,389,385 (+)NCBI
Dog10K_Boxer_Tasha1721,279,466 - 21,281,151 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_853799   ⟸   XM_848706
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LEL8 (UniProtKB/TrEMBL),   A0A8C0S8M7 (UniProtKB/TrEMBL),   A0A8P0SAF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005630321   ⟸   XM_005630264
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000007274   ⟸   ENSCAFT00000007848
RefSeq Acc Id: XP_038354478   ⟸   XM_038498550
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038354477   ⟸   XM_038498549
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481102   ⟸   XM_038625174
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481101   ⟸   XM_038625173
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038546987   ⟸   XM_038691059
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038546986   ⟸   XM_038691058
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MPV4 (UniProtKB/TrEMBL),   A0A8I3N3D6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417031   ⟸   XM_038561103
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417030   ⟸   XM_038561102
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MPV4 (UniProtKB/TrEMBL),   A0A8I3N3D6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845010900   ⟸   ENSCAFT00845014064

Promoters
RGD ID:13686197
Promoter ID:EPDNEW_C4265
Type:multiple initiation site
Name:KRTCAP3_1
Description:keratinocyte associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11721,387,788 - 21,387,848EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004874 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009307 UniProtKB/TrEMBL
  ENSCAFG00040010733 UniProtKB/TrEMBL
  ENSCAFG00845007989 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007848.5 UniProtKB/TrEMBL
  ENSCAFT00030017243.1 UniProtKB/TrEMBL
  ENSCAFT00040019843.1 UniProtKB/TrEMBL
  ENSCAFT00845014064 ENTREZGENE
  ENSCAFT00845014064.1 UniProtKB/TrEMBL
InterPro Beta-casein-like UniProtKB/TrEMBL
NCBI Gene KRTCAP3 ENTREZGENE
PANTHER KERATINOCYTE-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  PTHR31258 UniProtKB/TrEMBL
Pfam BCLP UniProtKB/TrEMBL
UniProt A0A8C0LEL8 ENTREZGENE
  A0A8C0MPV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S8M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N3D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SAF9 ENTREZGENE
UniProt Secondary A0A8P0SAF9 UniProtKB/TrEMBL
VGNC ID VGNC:42545 ENTREZGENE