CA10 (carbonic anhydrase 10) - Rat Genome Database

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Gene: CA10 (carbonic anhydrase 10) Canis lupus familiaris
Analyze
Symbol: CA10
Name: carbonic anhydrase 10
RGD ID: 12168393
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carbonic anhydrase-related protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1927,382,508 - 27,863,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl927,383,588 - 27,862,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha926,709,833 - 27,197,336 (-)NCBI
ROS_Cfam_1.0928,176,480 - 28,657,670 (-)NCBI
UMICH_Zoey_3.1926,942,042 - 27,417,434 (-)NCBI
UNSW_CanFamBas_1.0927,201,860 - 27,676,691 (-)NCBI
UU_Cfam_GSD_1.0927,332,548 - 27,807,012 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
CA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1927,382,508 - 27,863,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl927,383,588 - 27,862,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha926,709,833 - 27,197,336 (-)NCBI
ROS_Cfam_1.0928,176,480 - 28,657,670 (-)NCBI
UMICH_Zoey_3.1926,942,042 - 27,417,434 (-)NCBI
UNSW_CanFamBas_1.0927,201,860 - 27,676,691 (-)NCBI
UU_Cfam_GSD_1.0927,332,548 - 27,807,012 (-)NCBI
CA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1751,630,313 - 52,160,017 (-)EnsemblGRCh38hg38GRCh38
GRCh381751,630,313 - 52,160,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371749,707,674 - 50,237,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361747,062,673 - 47,592,376 (-)NCBINCBI36hg18NCBI36
Build 341747,062,682 - 47,591,086NCBI
Celera1746,168,954 - 46,698,633 (-)NCBI
Cytogenetic Map17q21.33-q22NCBI
HuRef1745,077,023 - 45,606,524 (-)NCBIHuRef
CHM1_11749,772,091 - 50,302,474 (-)NCBICHM1_1
Car10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,988,807 - 93,492,577 (+)NCBIGRCm39mm39
GRCm39 Ensembl1192,988,854 - 93,492,575 (+)Ensembl
GRCm381193,096,805 - 93,601,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,098,028 - 93,601,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv371192,960,604 - 93,463,065 (+)NCBIGRCm37mm9NCBIm37
MGSCv361192,914,500 - 93,417,363 (+)NCBImm8
Celera11102,697,483 - 103,221,769 (+)NCBICelera
Cytogenetic Map11DNCBI
Car10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21078,055,875 - 78,556,490 (+)NCBI
Rnor_6.0 Ensembl1080,790,168 - 81,296,363 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01080,790,151 - 81,297,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01080,633,872 - 81,133,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41081,756,486 - 82,238,335 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1076,855,697 - 77,353,776 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ca10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554519,877,223 - 10,362,414 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554519,877,768 - 10,362,363 (+)NCBIChiLan1.0ChiLan1.0
CA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11750,587,548 - 51,126,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1750,587,548 - 51,124,265 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01745,718,219 - 46,257,295 (-)NCBIMhudiblu_PPA_v0panPan3
Ca10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,798,112 - 27,274,308 (-)NCBI
SpeTri2.0NW_0049364909,800,533 - 10,277,034 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1227,957,732 - 28,617,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11227,979,321 - 28,619,022 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21228,270,028 - 28,295,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA10
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11641,169,232 - 41,720,008 (+)NCBI
Ca10
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247957,284,520 - 7,792,200 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 3 17 3 3 6 1 6 3
Below cutoff 2 1 5 3 3 3 6 5 7 4 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014116666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038676955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000044667   ⟹   ENSCAFP00000036841
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl927,383,588 - 27,862,086 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000064943   ⟹   ENSCAFP00000060774
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl927,383,588 - 27,581,323 (-)Ensembl
RefSeq Acc Id: XM_014116666   ⟹   XP_013972141
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1927,382,508 - 27,863,411 (-)NCBI
Dog10K_Boxer_Tasha926,709,833 - 27,196,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022423127   ⟹   XP_022278835
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1927,382,508 - 27,863,411 (-)NCBI
Dog10K_Boxer_Tasha926,709,833 - 27,196,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022423128   ⟹   XP_022278836
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1927,382,508 - 27,863,806 (-)NCBI
Dog10K_Boxer_Tasha926,709,833 - 27,197,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038485966   ⟹   XP_038341894
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1926,942,042 - 27,417,039 (-)NCBI
RefSeq Acc Id: XM_038485967   ⟹   XP_038341895
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1926,942,042 - 27,417,434 (-)NCBI
RefSeq Acc Id: XM_038485968   ⟹   XP_038341896
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1926,942,042 - 27,417,039 (-)NCBI
RefSeq Acc Id: XM_038547750   ⟹   XP_038403678
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0927,332,548 - 27,806,617 (-)NCBI
RefSeq Acc Id: XM_038547751   ⟹   XP_038403679
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0927,332,548 - 27,805,551 (-)NCBI
RefSeq Acc Id: XM_038547752   ⟹   XP_038403680
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0927,332,548 - 27,807,012 (-)NCBI
RefSeq Acc Id: XM_038547753   ⟹   XP_038403681
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0927,332,548 - 27,806,617 (-)NCBI
RefSeq Acc Id: XM_038611722   ⟹   XP_038467650
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0927,201,860 - 27,676,296 (-)NCBI
RefSeq Acc Id: XM_038611723   ⟹   XP_038467651
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0927,201,860 - 27,676,691 (-)NCBI
RefSeq Acc Id: XM_038611724   ⟹   XP_038467652
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0927,201,860 - 27,676,296 (-)NCBI
RefSeq Acc Id: XM_038676952   ⟹   XP_038532880
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0928,176,480 - 28,657,275 (-)NCBI
RefSeq Acc Id: XM_038676953   ⟹   XP_038532881
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0928,176,480 - 28,656,199 (-)NCBI
RefSeq Acc Id: XM_038676954   ⟹   XP_038532882
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0928,176,480 - 28,657,670 (-)NCBI
RefSeq Acc Id: XM_038676955   ⟹   XP_038532883
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0928,176,480 - 28,657,275 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013972141   ⟸   XM_014116666
- UniProtKB: J9NUK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022278836   ⟸   XM_022423128
- Sequence:
RefSeq Acc Id: XP_022278835   ⟸   XM_022423127
- Sequence:
RefSeq Acc Id: ENSCAFP00000060774   ⟸   ENSCAFT00000064943
RefSeq Acc Id: ENSCAFP00000036841   ⟸   ENSCAFT00000044667
RefSeq Acc Id: XP_038341895   ⟸   XM_038485967
RefSeq Acc Id: XP_038341896   ⟸   XM_038485968
RefSeq Acc Id: XP_038341894   ⟸   XM_038485966
RefSeq Acc Id: XP_038467651   ⟸   XM_038611723
RefSeq Acc Id: XP_038467652   ⟸   XM_038611724
RefSeq Acc Id: XP_038467650   ⟸   XM_038611722
RefSeq Acc Id: XP_038532882   ⟸   XM_038676954
RefSeq Acc Id: XP_038532883   ⟸   XM_038676955
RefSeq Acc Id: XP_038532880   ⟸   XM_038676952
RefSeq Acc Id: XP_038532881   ⟸   XM_038676953
RefSeq Acc Id: XP_038403680   ⟸   XM_038547752
RefSeq Acc Id: XP_038403681   ⟸   XM_038547753
RefSeq Acc Id: XP_038403678   ⟸   XM_038547750
RefSeq Acc Id: XP_038403679   ⟸   XM_038547751
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030895 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000036841 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000060774 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044667 UniProtKB/TrEMBL
  ENSCAFT00000064943 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro alpha_CARP_X/XI UniProtKB/TrEMBL
  CA10 UniProtKB/TrEMBL
  Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
KEGG Report cfa:609477 UniProtKB/TrEMBL
NCBI Gene CA10 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF91 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A5F4D278_CANLF UniProtKB/TrEMBL
  J9NUK2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38605 ENTREZGENE