TAPT1 (transmembrane anterior posterior transformation 1) - Rat Genome Database

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Gene: TAPT1 (transmembrane anterior posterior transformation 1) Canis lupus familiaris
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Symbol: TAPT1
Name: transmembrane anterior posterior transformation 1
RGD ID: 12167256
Description: INVOLVED IN embryonic skeletal system development (ortholog); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); Joubert syndrome 1 (ortholog); FOUND IN centrosome (inferred); ciliary basal body (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane anterior posterior transformation protein 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,124,645 - 64,189,509 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,124,045 - 64,188,071 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,642,783 - 66,707,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0364,602,587 - 64,667,226 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,601,990 - 64,667,206 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,092,826 - 64,157,634 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,296,623 - 64,361,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,657,245 - 64,722,079 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TAPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,124,645 - 64,189,509 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,124,045 - 64,188,071 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,642,783 - 66,707,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0364,602,587 - 64,667,226 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl364,601,990 - 64,667,206 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,092,826 - 64,157,634 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,296,623 - 64,361,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,657,245 - 64,722,079 (+)NCBIUU_Cfam_GSD_1.0
TAPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,160,505 - 16,227,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,160,505 - 16,227,410 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,162,128 - 16,228,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,771,226 - 15,837,259 (-)NCBINCBI36Build 36hg18NCBI36
Celera416,626,692 - 16,693,512 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,511,711 - 15,593,606 (-)NCBIHuRef
CHM1_1416,160,072 - 16,226,096 (-)NCBICHM1_1
T2T-CHM13v2.0416,142,386 - 16,209,261 (-)NCBIT2T-CHM13v2.0
Tapt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,332,496 - 44,384,411 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,332,496 - 44,383,968 (-)EnsemblGRCm39 Ensembl
GRCm38544,175,154 - 44,231,163 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl544,175,154 - 44,226,626 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,566,398 - 44,617,845 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,463,407 - 44,514,854 (-)NCBIMGSCv36mm8
Celera541,594,911 - 41,646,303 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map524.24NCBI
Tapt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,085,966 - 71,132,228 (+)NCBIGRCr8
mRatBN7.21466,873,467 - 66,919,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,873,459 - 66,919,741 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01471,416,153 - 71,462,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,424,083 - 71,462,618 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,455,305 - 71,493,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,004,598 - 72,050,704 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,006,988 - 72,051,867 (+)NCBI
Celera1465,833,416 - 65,879,803 (+)NCBICelera
Cytogenetic Map14q21NCBI
Tapt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,833,883 - 7,893,131 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,833,883 - 7,892,948 (+)NCBIChiLan1.0ChiLan1.0
TAPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,430,839 - 16,496,538 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,627,404 - 16,694,308 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,589,166 - 10,654,951 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1415,886,075 - 15,938,591 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,886,080 - 15,938,594 (-)Ensemblpanpan1.1panPan2
Tapt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,073,972 - 58,121,605 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,777,415 - 11,823,421 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,777,657 - 11,823,296 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,365,432 - 11,416,488 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,365,423 - 11,415,699 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2811,018,225 - 11,066,666 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12733,986,078 - 34,051,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2733,985,766 - 34,052,262 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604780,716,597 - 80,782,140 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tapt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475515,639,136 - 15,699,006 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475515,639,200 - 15,698,828 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAPT1
908 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 5 12 8 10 5
Low 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000024049   ⟹   ENSCAFP00000022327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,124,045 - 64,188,071 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078347   ⟹   ENSCAFP00000045504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,124,045 - 64,166,292 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087563   ⟹   ENSCAFP00000046675
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,124,045 - 64,188,071 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000093257   ⟹   ENSCAFP00000053894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,124,045 - 64,188,071 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001248   ⟹   ENSCAFP00845000952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl364,601,990 - 64,667,206 (+)Ensembl
RefSeq Acc Id: XM_005618553   ⟹   XP_005618610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1364,124,645 - 64,189,509 (+)NCBI
Dog10K_Boxer_Tasha366,642,783 - 66,707,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472347   ⟹   XP_038328275
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1364,092,826 - 64,157,634 (+)NCBI
RefSeq Acc Id: XM_038533323   ⟹   XP_038389251
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0364,657,245 - 64,722,079 (+)NCBI
RefSeq Acc Id: XM_038597651   ⟹   XP_038453579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0364,296,623 - 64,361,325 (+)NCBI
RefSeq Acc Id: XM_038661832   ⟹   XP_038517760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,602,587 - 64,667,226 (+)NCBI
RefSeq Acc Id: XP_005618610   ⟸   XM_005618553
- UniProtKB: A0A8C0KGU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000045504   ⟸   ENSCAFT00000078347
RefSeq Acc Id: ENSCAFP00000046675   ⟸   ENSCAFT00000087563
RefSeq Acc Id: ENSCAFP00000022327   ⟸   ENSCAFT00000024049
RefSeq Acc Id: ENSCAFP00000053894   ⟸   ENSCAFT00000093257
RefSeq Acc Id: XP_038328275   ⟸   XM_038472347
RefSeq Acc Id: XP_038453579   ⟸   XM_038597651
RefSeq Acc Id: XP_038517760   ⟸   XM_038661832
- UniProtKB: A0A8C0KGU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389251   ⟸   XM_038533323
- UniProtKB: A0A8C0KGU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000952   ⟸   ENSCAFT00845001248


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015148 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845000756 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000093257.2 UniProtKB/TrEMBL
  ENSCAFT00845001248.1 UniProtKB/TrEMBL
InterPro Tatp1 UniProtKB/TrEMBL
NCBI Gene TAPT1 ENTREZGENE
PANTHER PTHR13317 UniProtKB/TrEMBL
  TRANSMEMBRANE ANTERIOR POSTERIOR TRANSFORMATION PROTEIN 1 HOMOLOG UniProtKB/TrEMBL
Pfam DUF747 UniProtKB/TrEMBL
UniProt A0A8C0KGU6 ENTREZGENE
  A0A8I3MGE0_CANLF UniProtKB/TrEMBL
  A0A8P0T6B4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:53245 ENTREZGENE