SLMAP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 20 | 32,592,576 - 32,738,515 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 20 | 32,594,417 - 32,738,823 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 32,521,391 - 32,667,566 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 32,865,997 - 33,012,696 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 32,866,001 - 33,013,397 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 32,321,432 - 32,468,023 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 32,678,316 - 32,826,357 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 32,850,352 - 32,996,713 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SLMAP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 3 | 57,756,309 - 57,930,013 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 57,755,450 - 57,930,003 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 57,742,036 - 57,915,740 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 57,718,214 - 57,889,934 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 3 | 57,718,213 - 57,889,934 | NCBI | | | | | Celera | 3 | 57,757,094 - 57,928,809 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | p14.3 | NCBI | | | | | HuRef | 3 | 57,840,319 - 58,012,336 (+) | NCBI | | HuRef | | | CHM1_1 | 3 | 57,693,425 - 57,865,092 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 57,796,684 - 57,970,383 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Slmap (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 14 | 26,134,323 - 26,256,103 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 26,134,323 - 26,256,086 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 26,413,168 - 26,534,624 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 26,413,168 - 26,534,931 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 27,232,661 - 27,353,226 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 25,246,359 - 25,366,924 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 22,656,214 - 22,777,124 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | A3 | NCBI | | | | | cM Map | 14 | 16.09 | NCBI | | | | |
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Slmap (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 16 | 1,673,964 - 1,791,902 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 16 | 1,667,205 - 1,785,200 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 16 | 1,667,208 - 1,785,149 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 16 | 1,675,270 - 1,791,777 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 16 | 2,821,093 - 2,937,472 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 16 | 1,681,843 - 1,798,227 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 16 | 2,112,271 - 2,227,336 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 16 | 2,112,274 - 2,227,309 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 16 | 2,087,744 - 2,201,812 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 16 | 1,707,264 - 1,822,281 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 16 | 1,708,665 - 1,846,767 (-) | NCBI | | | | | Celera | 16 | 1,641,356 - 1,755,574 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | p16 | NCBI | | | | |
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Slmap (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955430 | 7,471,400 - 7,622,459 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955430 | 7,470,823 - 7,620,101 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SLMAP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 2 | 57,723,573 - 57,898,859 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 57,728,730 - 57,903,636 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 57,688,669 - 57,864,355 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 59,108,247 - 59,280,713 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 59,108,247 - 59,280,713 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Slmap (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405118 | 174,918,976 - 175,069,993 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936473 | 8,057,042 - 8,209,087 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936473 | 8,057,236 - 8,208,564 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SLMAP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 13 | 39,571,981 - 39,719,923 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 39,571,930 - 39,720,229 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 43,454,259 - 43,545,298 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SLMAP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 22 | 19,054,322 - 19,231,037 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 22 | 19,054,673 - 19,232,336 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666041 | 147,635,320 - 147,814,440 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Slmap (Heterocephalus glaber - naked mole-rat) |
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