CLDN5 (claudin 5) - Rat Genome Database

Name: CLDN5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CLDN5 (claudin 5) Canis lupus familiaris

Analyze

Symbol:

CLDN5

Name:

claudin 5

RGD ID:

12166836

Description:

ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN establishment of endothelial barrier (ortholog); myelination (ortholog); negative regulation of complement-dependent cytotoxicity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN lateral plasma membrane (ortholog); paranode region of axon (ortholog); Schmidt-Lanterman incisure (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

claudin 5 (transmembrane protein deleted in velocardiofacial syndrome); claudin-5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLDN5 (claudin 5)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Cldn5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cldn5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cldn5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLDN5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cldn5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLDN5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLDN5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cldn5 (claudin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,702,464 - 29,704,950 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,703,683 - 29,704,339 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,657,506 - 29,659,994 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	31,103,894 - 31,106,387 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	31,104,951 - 31,106,379 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	29,151,222 - 29,153,712 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,776,939 - 28,779,430 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,862,380 - 29,864,535 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 22q11.2 deletion syndrome, distal (ISO)

chromosome 22q11.2 microduplication syndrome (ISO)

DiGeorge syndrome (ISO)

epilepsy (ISO)

genetic disease (ISO)

immunodeficiency 51 (ISO)

intellectual disability (ISO)

Intestinal Reperfusion Injury (ISO)

malignant mesothelioma (ISO)

megacolon (ISO)

middle cerebral artery infarction (ISO)

Neurodevelopmental Disorders (ISO)

Polyarteritis Nodosa, Childhood-Onset (ISO)

primary immunodeficiency disease (ISO)

respiratory allergy (ISO)

schizophrenia (ISO)

velocardiofacial syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bicellular tight junction assembly (IEA)

cell adhesion (IEA)

cell-cell junction assembly (IEA)

establishment of blood-retinal barrier (IEA)

establishment of endothelial barrier (ISO)

maintenance of blood-brain barrier (IEA)

myelination (ISO)

negative regulation of angiogenesis (IEA)

negative regulation of cell migration (IEA)

negative regulation of complement-dependent cytotoxicity (ISO)

negative regulation of gene expression (IEA)

negative regulation of vascular permeability (IEA)

positive regulation of bicellular tight junction assembly (IEA)

positive regulation of cell population proliferation (IEA)

positive regulation of establishment of endothelial barrier (IEA)

positive regulation of gene expression (IEA)

response to ethanol (ISO)

tight junction assembly (IEA)

transforming growth factor beta receptor signaling pathway (IEA)

Cellular Component

anchoring junction (IEA)

apicolateral plasma membrane (IEA)

bicellular tight junction (IEA)

cell-cell junction (IEA)

cortical actin cytoskeleton (IEA)

lateral plasma membrane (ISO)

membrane (IEA)

paranode region of axon (ISO)

plasma membrane (IEA)

Schmidt-Lanterman incisure (ISO)

tight junction (IEA)

Molecular Function

protein binding (ISO)

structural molecule activity (IEA)

References

Additional References at PubMed

PMID:19149104	PMID:20136787	PMID:21354944	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CLDN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,702,464 - 29,704,950 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,703,683 - 29,704,339 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,657,506 - 29,659,994 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	31,103,894 - 31,106,387 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	31,104,951 - 31,106,379 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	29,151,222 - 29,153,712 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,776,939 - 28,779,430 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,862,380 - 29,864,535 (+)	NCBI		UU_Cfam_GSD_1.0

CLDN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	19,523,024 - 19,525,337 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	19,523,024 - 19,527,545 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	19,510,547 - 19,512,860 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	17,890,550 - 17,892,860 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	17,885,103 - 17,887,414	NCBI
Celera	22	3,362,807 - 3,365,120 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	3,131,378 - 3,133,692 (-)	NCBI		HuRef
CHM1_1	22	19,510,114 - 19,512,427 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	19,899,865 - 19,902,178 (-)	NCBI		T2T-CHM13v2.0

Cldn5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	18,595,597 - 18,597,012 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,595,597 - 18,597,012 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	18,776,847 - 18,778,262 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,776,847 - 18,778,262 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	18,776,940 - 18,778,353 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,690,410 - 18,691,823 (+)	NCBI		MGSCv36	mm8
Celera	16	19,350,901 - 19,352,314 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.63	NCBI

Cldn5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	95,717,172 - 95,718,598 (-)	NCBI		GRCr8
mRatBN7.2	11	82,212,822 - 82,214,248 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,211,475 - 82,214,992 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	90,944,303 - 90,945,729 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	83,605,524 - 83,606,950 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	82,659,043 - 82,660,469 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,356,292 - 86,357,718 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,356,294 - 86,357,718 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	89,458,258 - 89,459,684 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	80,993,136 - 80,994,562 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Cldn5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	18,509,676 - 18,510,332 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	18,509,501 - 18,511,267 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLDN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,148,325 - 29,150,156 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	31,696,053 - 31,697,888 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,282,215 - 2,286,724 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	17,957,605 - 17,962,121 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	17,958,182 - 17,959,093 (-)	Ensembl	panpan1.1		panPan2

Cldn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	139,296,955 - 139,298,554 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	3,456,166 - 3,456,822 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	3,455,508 - 3,457,053 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLDN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,161,042 - 51,163,482 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	51,161,490 - 51,162,382 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	54,778,542 - 54,779,434 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLDN5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	6,227,881 - 6,230,199 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	6,228,965 - 6,229,621 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	703,479 - 705,842 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cldn5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	164,761 - 165,417 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	164,113 - 166,502 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CLDN5
25 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005636589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038512622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038574533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038638746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000083296 ⟹ ENSCAFP00000045788

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	26	29,703,683 - 29,704,339 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845052044 ⟹ ENSCAFP00845040828

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	26	31,104,951 - 31,106,379 (+)	Ensembl

RefSeq Acc Id:

XM_005636589 ⟹ XP_005636646

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	26	29,702,464 - 29,704,950 (+)	NCBI
Dog10K_Boxer_Tasha	26	29,657,506 - 29,659,994 (+)	NCBI

Sequence:

show sequence

TGGGGCCTGAGGCCTGGGGTGCCCGGGGTCCCACTGCCACTGGTGGGAGGGCCGCGCACAGCAC
TTCCGTGTCCCTTTGTGTTTCTGCTCTCTGAGGGCTAGAGTAGGCCCCCAAGCCTGGGGCCACG
GGCTGCTCCTAGGAGGACAGACTGTTGAGTCACTGGAGAACACTGGGGACTTCCCGAAGTGGTG
TCGACGGAGCTGGGGCCTCAAGGATGGGGGATGGGAAGCGTCGCAGGAAGAGGAGCAGCCAGTG
CAAAGGTTGGGAGGTCTGGGAAGTCCCGGAGGCAGGGGCAGAGTGAGGGTCTGCAGAGGTGCTG
GTGAGCCCCCCCTTCGCCCCCCCCCCCCGTTCCAACCTGCTTCCTGTTGGGGTCTCAGGCTGGG
CAGTGGCGCTAGGCAGGACCTTGGGCTGGAGGTTTCAGGCCTGCCGGGCCCCTTGGCCTCCGGG
AGACAAAGTGCCAGGACTCAGAGGGGAAGCGCGCAGTAAGGGCACGAAGGGGTCGGGGATGGGA
TCGGACTCCCGGGCGACAGTCCTGGAGTAACAGGCCGGGCTGTGCCCCGCGAACTCAGGAGAAG
AGGCCCAAGAGTCCCTCTCGCAAACCCCTGCGCGACAGTGATGGTGGGGGGCCCGGCAGACCTT
GGCCAGGGAAGAGTGGAGCTGGCCTGGGGGGTTAGGGACCTTCGCGCTCGCTCCGGGTTGCGGC
GCGGGCAGCTGGTGCAGTCATGCAGCTCCTGAAGTGGGAGAGCTGGGACACGGGGAGGTGGCCC
GCGGAGCGCGCGCCCAGCCACCCCAGGTCAGTCCAGAACGAGCTCTGGACATCTGTGGGTGCAC
GGCTCGGGGGGCGGCGGCCGGGCGGGGAGCGGTGCCGGCGCCCTCCGAGGCCCCCAAGGGCAGG
GCTGTCCCTAACTCCGGCTGCCGGGGGCGCCCGTGATTGGCCGAGGGTCGGTGGCCAGCGCGCG
GATTGGCTGCTTGGAGGCCAGGGGCCGGGCAGGCGGGGTGGATCCGCCCCCGAACCTTCAAATG
GGAAGCCCCCCCAGAGGCGCCCGCAGATCCGAGGCTGTGCCAGACCCGCCGGGGCCGCGGACCG
GAGGCGGTGAGCCGAGCGCCCGGGCGCAGAGGCACCAGGGCCCGCTCAGGGCGCCCAGCCGCTC
CACCGAGGCACCGCCGCGCCCCGCCCCGAGGCCCGGGGGCCGTCGGGCGCCCGTCTCGCCTCCA
GCCATGGGGTCGGCGGCGCTGGAGATCCTCGGCCTGGTGCTGTGCCTGGTGGGCTGGGTGGGCC
TGATCCTGGCGTGCGGGCTGCCCATGTGGCAGGTGACCGCCTTCCTGGACCACAACATCGTGAC
GGCGCAGACCACCTGGAAGGGGCTGTGGATGTCGTGCGTGGTGCAGAGCACGGGGCACATGCAG
TGCAAGGTGTACGACTCGGTGCTGGCGCTGAGCACCGAGGTGCAGGCGGCGCGGGCTCTCACCG
TGGGCGCCGTGCTGCTGGCGCTCGTCGCGCTCTTCGTGACCCTGGCGGGCGCGCAGTGCACCAC
CTGCGTGGCCCCCGGGCCGGCCAAGGCGCGCGTGGCCCTGACGGGCGGCGCGCTCTACGCGCTG
TGCGGGCTGCTGGCGCTCGTGCCGCTCTGCTGGTTCGCCAACATCGTGGTCCGCGAGTTCTACG
ACCCGACCGTGCCCATGTCGCAGAAGTACGAGCTGGGCGCGGCGCTGTACATCGGCTGGGCGGC
CTCGGCGCTGCTCATGTGCGGCGGCGGCCTCGTGTGCTGCGGCGCCTGGGTGTGCGCCGGCCGC
CCCGACTTCAGCTTCCCGGTCAAGTACTCCGCGCCACGGCGGCCCACGGCCACCGGCGACTACG
ACAAGAAGAACTACGTCTGAGGGCGCGGGACTCGGCGGGGCCCCCGGCGCCAGCCCCTCTCCCG
AGCGGGCCGCCCGGGCCTGGGAGCCCCGCGTGGGCCCCCCCGGAAAGGCGGGCTCTGGGCTGGA
CGTGGCGCGCTGACCGGCGGGGACCCTGCTCGCGGCCTCAGCGCGTCCTCTCCAGGCGCCACTA
GCCGCGCCCTGGGGCCACGCACTTGGGAGGACTTGCCGGTCTCTTTCTCTGGGCGCAGAGCTTG
CTCGGATGCGGGCGGGGCGCGGGTCCCTTTGGCTGAGCGGGCAATGGACCGAAATGCGATTCCC
TCCCGGACCCTCAAGGTCTTGGACGCCGTCATCCTCCCCAGCGGCTCCTGCTGCCTCCAGCGGG
GCAGACGGAGAGCCCAGGGGCCGCGGGCTGGGCTGTCGGAGGGGTGCGGACAGCTGGCCTTTAC
CCCAGCAGCGGGGCCTGAGCCTAGGCGGACTAAGACTTGGCCTGGACGTCCCTGCCTCCCCCAG
CAGCTCCCTAGGAGAGGCTTATGGGCACCAGGTCCTGAGTGTGGAGCTGGGGCCCTGTCCTCCG
CTGCAGCTTGTGGGGAGGGTAAGAATTTGCTTAGTAAATGGTTTGAATACCCTCC

hide sequence

RefSeq Acc Id:

XM_038436147 ⟹ XP_038292075

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	31,103,894 - 31,106,387 (+)	NCBI

RefSeq Acc Id:

XM_038512622 ⟹ XP_038368550

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	29,151,222 - 29,153,712 (+)	NCBI

RefSeq Acc Id:

XM_038574533 ⟹ XP_038430461

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	29,862,380 - 29,864,535 (+)	NCBI

RefSeq Acc Id:

XM_038638746 ⟹ XP_038494674

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	28,776,939 - 28,779,430 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005636646	(Get FASTA)	NCBI Sequence Viewer
	XP_038292075	(Get FASTA)	NCBI Sequence Viewer
	XP_038368550	(Get FASTA)	NCBI Sequence Viewer
	XP_038430461	(Get FASTA)	NCBI Sequence Viewer
	XP_038494674	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000045788.1
	ENSCAFP00030033366.1
	ENSCAFP00040037218.1
	ENSCAFP00845040828.1

RefSeq Acc Id:

XP_005636646 ⟸ XM_005636589

- Sequence:

show sequence

MGSPPRGARRSEAVPDPPGPRTGGGEPSARAQRHQGPLRAPSRSTEAPPRPAPRPGGRRAPVSP
PAMGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM
QCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKARVALTGGALYA
LCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGLVCCGAWVCAG
RPDFSFPVKYSAPRRPTATGDYDKKNYV

hide sequence

RefSeq Acc Id:

ENSCAFP00000045788 ⟸ ENSCAFT00000083296

RefSeq Acc Id:

XP_038368550 ⟸ XM_038512622

RefSeq Acc Id:

XP_038494674 ⟸ XM_038638746

RefSeq Acc Id:

XP_038292075 ⟸ XM_038436147

RefSeq Acc Id:

XP_038430461 ⟸ XM_038574533

RefSeq Acc Id:

ENSCAFP00845040828 ⟸ ENSCAFT00845052044

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000042795	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030020860	UniProtKB/TrEMBL
	ENSCAFG00040022954	UniProtKB/TrEMBL
	ENSCAFG00845029410	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000083296.2	UniProtKB/TrEMBL
	ENSCAFT00030038253.1	UniProtKB/TrEMBL
	ENSCAFT00040042672.1	UniProtKB/TrEMBL
	ENSCAFT00845052044.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.140.150	UniProtKB/TrEMBL
InterPro	Claudin	UniProtKB/TrEMBL
	Claudin5	UniProtKB/TrEMBL
	Claudin_CS	UniProtKB/TrEMBL
	PMP22/EMP/MP20/Claudin	UniProtKB/TrEMBL
NCBI Gene	CLDN5	ENTREZGENE
PANTHER	CLAUDIN-5	UniProtKB/TrEMBL
	PTHR12002	UniProtKB/TrEMBL
Pfam	PMP22_Claudin	UniProtKB/TrEMBL
PRINTS	CLAUDIN	UniProtKB/TrEMBL
	CLAUDIN5	UniProtKB/TrEMBL
PROSITE	CLAUDIN	UniProtKB/TrEMBL
UniProt	A0A8C0PD96_CANLF	UniProtKB/TrEMBL
	A0A8I3Q328_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:111411	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD