ANKRD13A (ankyrin repeat domain 13A) - Rat Genome Database

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Gene: ANKRD13A (ankyrin repeat domain 13A) Canis lupus familiaris
Analyze
Symbol: ANKRD13A
Name: ankyrin repeat domain 13A
RGD ID: 12164453
Description: ENCODES a protein that exhibits ubiquitin-dependent protein binding (inferred); INVOLVED IN negative regulation of protein localization to endosome (inferred); negative regulation of receptor internalization (inferred); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ankyrin repeat domain-containing protein 13A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,135,500 - 17,168,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,137,297 - 17,167,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,634,213 - 18,666,708 (+)NCBI
ROS_Cfam_1.02617,479,956 - 17,512,486 (-)NCBI
UMICH_Zoey_3.12618,843,776 - 18,876,267 (+)NCBI
UNSW_CanFamBas_1.02617,469,736 - 17,502,237 (-)NCBI
UU_Cfam_GSD_1.02617,487,197 - 17,519,707 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ANKRD13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,135,500 - 17,168,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,137,297 - 17,167,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,634,213 - 18,666,708 (+)NCBI
ROS_Cfam_1.02617,479,956 - 17,512,486 (-)NCBI
UMICH_Zoey_3.12618,843,776 - 18,876,267 (+)NCBI
UNSW_CanFamBas_1.02617,469,736 - 17,502,237 (-)NCBI
UU_Cfam_GSD_1.02617,487,197 - 17,519,707 (-)NCBI
ANKRD13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12109,999,186 - 110,039,763 (+)EnsemblGRCh38hg38GRCh38
GRCh3812109,999,169 - 110,039,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712110,437,235 - 110,477,568 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,921,618 - 108,961,620 (+)NCBINCBI36hg18NCBI36
Build 3412108,899,954 - 108,939,953NCBI
Celera12110,061,469 - 110,101,471 (+)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12107,452,978 - 107,493,242 (+)NCBIHuRef
CHM1_112110,405,030 - 110,445,032 (+)NCBICHM1_1
Ankrd13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,913,009 - 114,943,882 (+)NCBIGRCm39mm39
GRCm39 Ensembl5114,912,738 - 114,944,261 (+)Ensembl
GRCm385114,774,948 - 114,805,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,774,677 - 114,806,200 (+)EnsemblGRCm38mm10GRCm38
MGSCv375115,225,149 - 115,255,830 (+)NCBIGRCm37mm9NCBIm37
MGSCv365115,036,139 - 115,066,820 (+)NCBImm8
Celera5111,873,346 - 111,903,995 (+)NCBICelera
Cytogenetic Map5FNCBI
Ankrd13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,798,196 - 41,828,327 (-)NCBI
Rnor_6.0 Ensembl1247,558,590 - 47,588,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01247,558,587 - 47,588,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01249,352,113 - 49,382,397 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,086,125 - 43,115,877 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,949,513 - 42,979,265 (-)NCBI
Celera1243,413,708 - 43,443,457 (-)NCBICelera
Cytogenetic Map12q16NCBI
Ankrd13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,576,406 - 8,610,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,576,406 - 8,610,878 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112110,970,433 - 111,009,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,979,786 - 111,007,899 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012107,575,427 - 107,615,706 (+)NCBIMhudiblu_PPA_v0panPan3
Ankrd13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118143,858,198 - 143,894,383 (-)NCBI
SpeTri2.0NW_0049367691,581,517 - 1,617,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,954,345 - 40,990,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,954,345 - 40,995,882 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,479,735 - 43,506,000 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,238,471 - 105,280,712 (+)NCBI
Ankrd13a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474710,479,421 - 10,515,492 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 15 6 6 6 8 10 6
Low 5 7 6 6 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022410306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016937   ⟹   ENSCAFP00000015671
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2617,137,297 - 17,167,932 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061532   ⟹   ENSCAFP00000054345
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2617,137,297 - 17,156,613 (-)Ensembl
RefSeq Acc Id: XM_022410306   ⟹   XP_022266014
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,135,500 - 17,168,003 (-)NCBI
Dog10K_Boxer_Tasha2618,634,213 - 18,666,708 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038436957   ⟹   XP_038292885
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02617,479,956 - 17,512,486 (-)NCBI
RefSeq Acc Id: XM_038436958   ⟹   XP_038292886
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02617,479,956 - 17,512,483 (-)NCBI
RefSeq Acc Id: XM_038511938   ⟹   XP_038367866
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12618,843,777 - 18,876,267 (+)NCBI
RefSeq Acc Id: XM_038511939   ⟹   XP_038367867
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12618,843,779 - 18,876,267 (+)NCBI
RefSeq Acc Id: XM_038511940   ⟹   XP_038367868
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12618,843,776 - 18,874,385 (+)NCBI
RefSeq Acc Id: XM_038575365   ⟹   XP_038431293
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02617,487,197 - 17,519,707 (-)NCBI
RefSeq Acc Id: XM_038575366   ⟹   XP_038431294
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02617,487,197 - 17,519,704 (-)NCBI
RefSeq Acc Id: XM_038639550   ⟹   XP_038495478
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02617,469,736 - 17,502,237 (-)NCBI
RefSeq Acc Id: XM_038639551   ⟹   XP_038495479
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02617,469,736 - 17,502,235 (-)NCBI
RefSeq Acc Id: XM_846379   ⟹   XP_851472
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,135,500 - 17,168,000 (-)NCBI
Dog10K_Boxer_Tasha2618,634,215 - 18,666,708 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_851472   ⟸   XM_846379
- Peptide Label: isoform X2
- UniProtKB: F1PS53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266014   ⟸   XM_022410306
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000015671   ⟸   ENSCAFT00000016937
RefSeq Acc Id: ENSCAFP00000054345   ⟸   ENSCAFT00000061532
RefSeq Acc Id: XP_038367868   ⟸   XM_038511940
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038367866   ⟸   XM_038511938
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038367867   ⟸   XM_038511939
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038495478   ⟸   XM_038639550
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038495479   ⟸   XM_038639551
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038292885   ⟸   XM_038436957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038292886   ⟸   XM_038436958
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038431293   ⟸   XM_038575365
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038431294   ⟸   XM_038575366
- Peptide Label: isoform X2
Protein Domains
ANK_REP_REGION

Promoters
RGD ID:13687941
Promoter ID:EPDNEW_C6008
Type:multiple initiation site
Name:ANKRD13A_1
Description:ankyrin repeat domain 13A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,168,213 - 17,168,273EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010637 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000015671 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000054345 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016937 UniProtKB/TrEMBL
  ENSCAFT00000061532 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene ANKRD13A ENTREZGENE
PANTHER PTHR12447 UniProtKB/TrEMBL
Pfam GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A5F4CJ47_CANLF UniProtKB/TrEMBL
  F1PS53 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37884 ENTREZGENE